Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027542 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 1.9e-114 416.0 230 100.0
vmacro20490 Vaccinium macrocarpon HOM05D004935 ORTHO05D005676 1.4e-77 293.5 221 77.4
Rhsim10G0182800 Rhododendron simsii HOM05D004935 ORTHO05D005676 9.1e-77 290.8 219 76.7
Actinidia01601 Actinidia chinensis HOM05D004935 ORTHO05D005676 9.4e-74 280.8 221 74.7
Actinidia17180 Actinidia chinensis HOM05D004935 ORTHO05D005676 4.7e-73 278.5 230 71.3
Actinidia28792 Actinidia chinensis HOM05D004935 ORTHO05D005676 3.0e-72 275.8 230 68.7
Hma1.2p1_0034F.1_g021280 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 4.8e-70 268.5 220 70.0
Hma1.2p1_0158F.1_g069850 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 5.0e-67 258.5 224 67.4
Dinv28224 Davidia involucrata HOM05D004935 ORTHO05D005676 6.6e-67 258.1 230 67.4
CiPaw.04G048500 Carya illinoinensis HOM05D004935 ORTHO05D005676 2.5e-66 256.1 221 68.8
Thecc.04G001700 Theobroma cacao HOM05D004935 ORTHO05D005676 2.5e-66 256.1 201 72.1
Dinv19063 Davidia involucrata HOM05D004935 ORTHO05D005676 9.5e-66 254.2 180 77.8
Manes.02G079800 Manihot esculenta HOM05D004935 ORTHO05D005676 3.6e-65 252.3 201 72.6
CiPaw.03G075500 Carya illinoinensis HOM05D004935 ORTHO05D005676 1.4e-64 250.4 226 67.3
RcHm_v2.0_Chr3g0492651 Rosa chinensis HOM05D004935 ORTHO05D005676 1.4e-64 250.4 219 67.6
Prupe.3G163400 Prunus persica HOM05D004935 ORTHO05D005676 2.0e-63 246.5 200 71.0
MD09G1265200 Malus domestica HOM05D004935 ORTHO05D005676 1.7e-62 243.4 201 69.2
Lj4A255T23 Lonicera japonica HOM05D004935 ORTHO05D005676 2.2e-62 243.0 212 67.0
Potri.004G082300 Populus trichocarpa HOM05D004935 ORTHO05D005676 4.9e-62 241.9 212 65.1
FAN28G0886 Fragaria x ananassa HOM05D004935 ORTHO05D005676 6.3e-62 241.5 220 64.1
FvH4_1g28640 Fragaria vesca HOM05D004935 ORTHO05D005676 1.4e-61 240.4 208 66.3
Duzib133G0236 Durio zibethinus HOM05D004935 ORTHO05D005676 1.8e-61 240.0 221 64.7
Nitab4.5_0002465g0010 Nicotiana tabacum HOM05D004935 ORTHO05D005676 1.8e-61 240.0 237 60.8
COL.COLO4_19777 Corchorus olitorius HOM05D004935 ORTHO05D005676 4.1e-61 238.8 222 65.3
Duzib138G1863 Durio zibethinus HOM05D004935 ORTHO05D005676 4.1e-61 238.8 198 71.7
MD17G1261400 Malus domestica HOM05D004935 ORTHO05D005676 4.1e-61 238.8 197 69.0
Nitab4.5_0001088g0190 Nicotiana tabacum HOM05D004935 ORTHO05D005676 4.1e-61 238.8 228 64.0
Peaxi162Scf00078g00178 Petunia axillaris HOM05D004935 ORTHO05D005676 7.0e-61 238.0 235 60.9
Manes.01G121800 Manihot esculenta HOM05D004935 ORTHO05D005676 1.2e-60 237.3 201 70.1
CANSAT78G0803 Cannabis sativa HOM05D004935 ORTHO05D005676 1.6e-60 236.9 225 64.0
PGSC0003DMG400013258 Solanum tuberosum HOM05D004935 ORTHO05D005676 1.6e-60 236.9 233 61.4
Aqoxy3G04045 Aquilegia oxysepala HOM05D004935 ORTHO05D005676 2.0e-60 236.5 201 67.7
TWI53G1040 Tripterygium wilfordii HOM05D004935 ORTHO05D005676 2.0e-60 236.5 204 68.6
Eucgr.J01625 Eucalyptus grandis HOM05D004935 ORTHO05D005676 3.5e-60 235.7 200 64.5
Cfa007772 Carpinus fangiana HOM05D004935 ORTHO05D005676 4.5e-60 235.3 286 54.5
Sopen11g006600 Solanum pennellii HOM05D004935 ORTHO05D005676 1.0e-59 234.2 236 61.4
Migut.K01110 Erythranthe guttata HOM05D004935 ORTHO05D005676 3.9e-59 232.3 206 65.0
Gohir.A07G073800 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.9e-58 229.9 221 61.5
MSTRG.3688 Avicennia marina HOM05D004935 ORTHO05D005676 2.5e-58 229.6 216 63.4
Ciclev10029179m.g Citrus clementina HOM05D004935 ORTHO05D005676 2.5e-58 229.6 205 67.3
Solyc11g011760.3 Solanum lycopersicum HOM05D004935 ORTHO05D005676 2.5e-58 229.6 233 60.1
Lj2A514G44 Lonicera japonica HOM05D004935 ORTHO05D005676 4.3e-58 228.8 250 55.6
Nn4g24526 Nelumbo nucifera HOM05D004935 ORTHO05D005676 4.3e-58 228.8 224 63.4
Sabra04G0054800 Salix brachista HOM05D004935 ORTHO05D005676 9.5e-58 227.6 214 60.7
Oeu032311.1 Olea europaea HOM05D004935 ORTHO05D005676 1.6e-57 226.9 225 61.8
QL02p059972 Quercus lobata HOM05D004935 ORTHO05D005676 1.6e-57 226.9 200 67.0
FAN26G0615 Fragaria x ananassa HOM05D004935 ORTHO05D005676 5.2e-56 221.9 238 58.4
SGA_v2.0_scaffold45G17134 Striga asiatica HOM05D004935 ORTHO05D005676 5.2e-56 221.9 255 54.5
Glyma.18G042900 Glycine max HOM05D004935 ORTHO05D005676 3.7e-54 215.7 190 63.7
Atru.chr1.1949 Acer truncatum HOM05D004935 ORTHO05D005676 4.9e-54 215.3 165 72.7
Hund13074 Selenicereus undatus HOM05D004935 ORTHO05D005676 6.4e-54 214.9 222 56.8
TPR.G12527 Trifolium pratense HOM05D004935 ORTHO05D005676 8.3e-54 214.5 190 61.1
Gohir.D07G078500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.9e-53 213.4 221 57.0
Phvul.001G228000 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 1.9e-53 213.4 197 60.9
Medtr5g091900 Medicago truncatula HOM05D004935 ORTHO05D005676 2.4e-53 213.0 193 61.7
CsaV3_5G024270 Cucumis sativus L. HOM05D004935 ORTHO05D005676 3.2e-53 212.6 182 68.7
Oeu029081.1 Olea europaea HOM05D004935 ORTHO05D005676 3.2e-53 212.6 194 63.4
Lj6g0018793 Lotus japonicus HOM05D004935 ORTHO05D005676 5.4e-53 211.8 201 61.2
MELO3C025122.2 Cucumis melo HOM05D004935 ORTHO05D005676 9.2e-53 211.1 221 59.3
ClCG01G008740 Citrullus lanatus HOM05D004935 ORTHO05D005676 1.6e-52 210.3 182 68.7
TAR622G0462 Trochodendron aralioides HOM05D004935 ORTHO05D005676 1.6e-52 210.3 227 54.6
arahy.Tifrunner.gnm1.ann1.5XP26J Arachis hypogaea HOM05D004935 ORTHO05D005676 2.0e-52 209.9 244 52.0
Glyma.11G213800 Glycine max HOM05D004935 ORTHO05D005676 2.7e-52 209.5 188 62.8
arahy.Tifrunner.gnm1.ann1.8KIW52 Arachis hypogaea HOM05D004935 ORTHO05D005676 3.5e-52 209.1 216 57.4
VMungo1383G0526 Vigna mungo HOM05D004935 ORTHO05D005676 3.5e-52 209.1 190 61.6
Gorai.001G082900 Gossypium raimondii HOM05D004935 ORTHO05D005676 7.8e-52 208.0 223 56.5
THA.LOC104820912 Tarenaya hassleriana HOM05D004935 ORTHO05D005676 2.3e-51 206.5 228 57.0
Gohir.A11G169300 Gossypium hirsutum HOM05D004935 ORTHO05D005676 3.0e-51 206.1 174 66.1
MBI13_g35399_MAGBIO Magnolia biondii HOM05D004935 ORTHO05D005676 1.5e-50 203.8 192 62.5
Cc07_g13020 Coffea canephora HOM05D004935 ORTHO05D005676 1.9e-50 203.4 236 55.9
SalBow3G4475 Salvia bowleyana HOM05D004935 ORTHO05D005676 4.3e-50 202.2 193 60.6
Gorai.007G188100 Gossypium raimondii HOM05D004935 ORTHO05D005676 7.3e-50 201.4 174 64.9
Ca_06292_v3 Cicer arietinum L. HOM05D004935 ORTHO05D005676 1.6e-49 200.3 205 57.1
Gohir.D11G175500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 3.6e-49 199.1 174 64.4
unitig_748.g8451 Utricularia gibba HOM05D004935 ORTHO05D005676 4.7e-49 198.7 187 63.1
arahy.Tifrunner.gnm1.ann1.63R0A2 Arachis hypogaea HOM05D004935 ORTHO05D005676 4.0e-48 195.7 216 55.1
Lalb_Chr10g0104161 Lupinus albus HOM05D004935 ORTHO05D005676 6.8e-48 194.9 216 55.6
PGR042G3611 Punica granatum HOM05D004935 ORTHO05D005676 8.9e-48 194.5 190 62.1
Lalb_Chr18g0053611 Lupinus albus HOM05D004935 ORTHO05D005676 1.2e-47 194.1 189 58.7
AL6G27510 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 3.4e-47 192.6 200 56.5
PSO170G5471 Papaver somniferum HOM05D004935 ORTHO05D005676 5.8e-47 191.8 184 56.0
PSO407G0171 Papaver somniferum HOM05D004935 ORTHO05D005676 9.8e-47 191.0 196 53.6
AT5G16550 Arabidopsis thaliana HOM05D004935 ORTHO05D005676 2.2e-46 189.9 187 59.4
Carub.0006s1475 Capsella rubella HOM05D004935 ORTHO05D005676 4.9e-46 188.7 198 56.1
Zm00001eb179280 Zea mays HOM05D004935 ORTHO05D005676 1.1e-45 187.6 217 48.4
Lsat_1_v5_gn_8_111520 Lactuca sativa HOM05D004935 ORTHO05D005676 1.9e-45 186.8 204 55.9
HPP92_017642 Vanilla planifolia HOM05D004935 ORTHO05D005676 7.0e-45 184.9 231 51.5
BcaC03g18499 Brassica carinata HOM05D004935 ORTHO05D005676 9.2e-45 184.5 199 58.3
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 9.2e-45 184.5 197 57.4
Zm00001eb041900 Zea mays HOM05D004935 ORTHO05D005676 2.1e-44 183.3 216 46.8
Sc11g0004790 Simmondsia chinensis HOM05D004935 ORTHO05D005676 7.8e-44 181.4 198 54.0
Lalb_Chr17g0345951 Lupinus albus HOM05D004935 ORTHO05D005676 3.0e-43 179.5 211 52.1
BcaC04g18869 Brassica carinata HOM05D004935 ORTHO05D005676 6.6e-43 178.3 194 56.7
A10p22660 Brassica napus HOM05D004935 ORTHO05D005676 8.6e-43 177.9 193 57.5
BraA10t44327Z Brassica rapa HOM05D004935 ORTHO05D005676 8.6e-43 177.9 193 57.5
C09p60610 Brassica napus HOM05D004935 ORTHO05D005676 1.1e-42 177.6 192 58.3
BolC9t58894H Brassica oleracea HOM05D004935 ORTHO05D005676 1.1e-42 177.6 192 58.3
BcaB08g36840 Brassica carinata HOM05D004935 ORTHO05D005676 3.3e-42 176.0 228 51.8
A02p03620 Brassica napus HOM05D004935 ORTHO05D005676 3.3e-42 176.0 217 52.1
BolC3t13402H Brassica oleracea HOM05D004935 ORTHO05D005676 3.3e-42 176.0 200 54.5
Psat2g044600 Pisum sativum HOM05D004935 ORTHO05D005676 3.3e-42 176.0 168 62.5
BcaB01g04976 Brassica carinata HOM05D004935 ORTHO05D005676 7.3e-42 174.9 178 57.9
BraA02t05331Z Brassica rapa HOM05D004935 ORTHO05D005676 1.6e-41 173.7 217 52.5
LjContig00141g0002036 Lotus japonicus HOM05D004935 ORTHO05D005676 1.6e-41 173.7 211 53.1
C03p09070 Brassica napus HOM05D004935 ORTHO05D005676 3.6e-41 172.6 215 50.2
Phvul.008G238800 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 8.1e-41 171.4 162 61.7
Glyma.02G242200 Glycine max HOM05D004935 ORTHO05D005676 1.8e-40 170.2 169 57.4
TPR.G9990 Trifolium pratense HOM05D004935 ORTHO05D005676 6.8e-40 168.3 172 58.1
Medtr5g077280 Medicago truncatula HOM05D004935 ORTHO05D005676 7.5e-39 164.9 168 59.5
CDE11G1189 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 2.2e-38 163.3 206 49.0
arahy.Tifrunner.gnm1.ann1.PKWW5Q Arachis hypogaea HOM05D004935 ORTHO05D005676 1.1e-37 161.0 185 52.4
VMungo0647G1435 Vigna mungo HOM05D004935 ORTHO05D005676 1.9e-37 160.2 168 58.3
CDE05G2820 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 4.6e-36 155.6 217 47.9
Haze_14300 Corylus avellana HOM05D004935 ORTHO05D005676 6.0e-36 155.2 272 43.0
TAR629G3076 Trochodendron aralioides HOM05D004935 ORTHO05D005676 1.0e-35 154.5 222 47.7
BcaC03g18497 Brassica carinata HOM05D004935 ORTHO05D005676 1.9e-34 150.2 207 48.8
C02p08410 Brassica napus HOM05D004935 ORTHO05D005676 1.9e-34 150.2 207 48.8
BolC2t06759H Brassica oleracea HOM05D004935 ORTHO05D005676 1.9e-34 150.2 207 48.8
GSVIVG01026318001 Vitis vinifera HOM05D004935 ORTHO05D005676 4.3e-34 149.1 103 86.4
Sp6g27610 Schrenkiella parvula HOM05D004935 ORTHO05D005676 5.6e-34 148.7 198 50.0
EL10Ac2g03209 Beta vulgaris HOM05D004935 ORTHO05D005676 1.6e-33 147.1 183 54.6
Aa31LG11G13100 Aethionema arabicum HOM05D004935 ORTHO05D005676 2.8e-33 146.4 210 47.6
Oeu014715.1 Olea europaea HOM05D004935 ORTHO05D005676 1.1e-32 144.4 121 66.9
Thhalv10014473m.g Eutrema salsugineum HOM05D004935 ORTHO05D005676 1.4e-32 144.1 191 50.3
Sed0000771 Sechium edule HOM05D004935 ORTHO05D005676 1.3e-30 137.5 200 46.0
Sc11g0004530 Simmondsia chinensis HOM05D004935 ORTHO05D005676 8.4e-30 134.8 198 45.5
A03p07850 Brassica napus HOM05D004935 ORTHO05D005676 1.1e-29 134.4 190 49.5
BraA03t10111Z Brassica rapa HOM05D000423 ORTHO05D005676 7.1e-29 131.7 190 48.4
Peaxi162Scf00085g00527 Petunia axillaris HOM05D004935 ORTHO05D005676 2.7e-28 129.8 92 77.2
ECA246G1322 Erigeron canadensis HOM05D004935 ORTHO05D005676 1.3e-27 127.5 166 49.4
HanXRQChr15g0489811 Helianthus annuus HOM05D004935 ORTHO05D005676 3.0e-27 126.3 173 48.0
DCAR_003418 Daucus carota HOM05D004935 ORTHO05D005676 5.1e-27 125.6 116 63.8
AL3G36180 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 8.1e-25 118.2 112 58.9
AL92U10070 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 1.4e-24 117.5 110 60.0
Mapoly0035s0070 Marchantia polymorpha HOM05D004935 ORTHO05D005676 2.9e-22 109.8 156 40.4
AL6G14310 Arabidopsis lyrata HOM05D000097 ORTHO05D005676 1.2e-20 104.4 111 55.9
AagrBONN_evm.TU.Sc2ySwM_117.2252 Anthoceros agrestis HOM05D004935 ORTHO05D005676 1.1e-18 97.8 144 38.9
Pp3c25_6290 Physcomitrium patens HOM05D004935 ORTHO05D005676 3.3e-18 96.3 152 42.1
CARHR196680 Cardamine hirsuta HOM05D004935 ORTHO05D005676 3.6e-17 92.8 85 71.8
Zm00001eb099130 Zea mays HOM05D004935 ORTHO05D005676 9.0e-16 88.2 110 50.0
CSS0034638 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 1.7e-14 84.0 49 83.7
FAN19G0113 Fragaria x ananassa HOM05D004935 ORTHO05D005676 8.4e-14 81.6 91 47.3
Medtr5g077270 Medicago truncatula HOM05D007893 ORTHO05D010042 3.2e-13 79.7 81 60.5
Pp3c6_9570 Physcomitrium patens HOM05D004935 ORTHO05D005676 5.4e-13 79.0 139 34.5
SEGI_39153 Sequoiadendron giganteum HOM05D004935 ORTHO05D005676 7.1e-13 78.6 112 46.4
Cpa.g.sc178.1 Carica papaya HOM05D004935 ORTHO05D005676 1.6e-12 77.4 100 48.0
DCAR_003417 Daucus carota HOM05D004935 ORTHO05D005676 3.5e-12 76.3 93 49.5
EL10Ac2g03210 Beta vulgaris HOM05D004935 ORTHO05D005676 7.9e-12 75.1 61 63.9
MSTRG.15645 Avicennia marina HOM05D004935 ORTHO05D005676 3.0e-11 73.2 93 46.2
CARHR196690 Cardamine hirsuta HOM05D004935 ORTHO05D005676 2.5e-10 70.1 83 47.0


User provided reference genes

Program Settings