Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027528 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 3.5e-126 454.9 221 100.0
CSS0032746 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 2.0e-68 263.1 220 64.1
CSS0005385 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 5.0e-64 248.4 217 62.2
CSS0028314 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 9.4e-55 217.6 218 55.0
CSS0013136 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 3.1e-50 202.6 165 62.4
ClCG11G000590 Citrullus lanatus HOM05D004865 ORTHO05D005949 9.5e-39 164.5 206 47.1
Sed0022242 Sechium edule HOM05D004865 ORTHO05D005949 2.8e-38 162.9 206 45.6
ClCG03G011140 Citrullus lanatus HOM05D004865 ORTHO05D005949 6.1e-38 161.8 202 46.5
ClCG03G011170 Citrullus lanatus HOM05D004865 ORTHO05D005949 5.7e-36 155.2 202 45.5
ClCG11G000680 Citrullus lanatus HOM05D004865 ORTHO05D005949 7.5e-36 154.8 206 45.1
MD09G1162900 Malus domestica HOM05D004865 ORTHO05D005949 1.7e-35 153.7 208 44.7
MD09G1162700 Malus domestica HOM05D004865 ORTHO05D005949 2.2e-35 153.3 206 46.6
MD09G1162600 Malus domestica HOM05D004865 ORTHO05D005949 6.4e-35 151.8 206 45.6
MELO3C010083.2 Cucumis melo HOM05D004865 ORTHO05D005949 7.0e-34 148.3 215 40.9
MD17G1147700 Malus domestica HOM05D004865 ORTHO05D005949 7.0e-34 148.3 196 45.9
CsaV3_1G044030 Cucumis sativus L. HOM05D004865 ORTHO05D005949 1.3e-32 144.1 207 42.5
Hma1.2p1_0543F.1_g175180 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 2.3e-32 143.3 207 42.5
Hma1.2p1_3336F.1_g335335 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 2.3e-32 143.3 207 42.5
Lj3A898T31 Lonicera japonica HOM05D004865 ORTHO05D005949 1.6e-30 137.1 206 43.2
MD05G1102400 Malus domestica HOM05D004865 ORTHO05D005949 1.6e-30 137.1 204 42.6
Prupe.2G116800 Prunus persica HOM05D004865 ORTHO05D005949 1.1e-26 124.4 200 42.5
Actinidia05767 Actinidia chinensis HOM05D004865 ORTHO05D005949 5.4e-26 122.1 198 39.9
Actinidia30931 Actinidia chinensis HOM05D004865 ORTHO05D005949 7.0e-26 121.7 201 40.3
Actinidia30932 Actinidia chinensis HOM05D004865 ORTHO05D005949 7.0e-26 121.7 201 39.8
MD17G1148000 Malus domestica HOM05D004865 ORTHO05D005949 1.2e-25 120.9 201 38.8
MD09G1163100 Malus domestica HOM05D004865 ORTHO05D005949 2.0e-25 120.2 202 40.6
Sc02g0003580 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.3e-24 117.5 199 41.2
Sc24g0002420 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.3e-24 116.7 194 41.2
Sc09g0006340 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.0e-24 116.3 195 39.0
Sc09g0006350 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.6e-24 115.2 195 38.5
FAN22G1472 Fragaria x ananassa HOM05D004865 ORTHO05D005949 8.6e-24 114.8 209 38.3
Duzib052G0039 Durio zibethinus HOM05D004865 ORTHO05D005949 1.1e-23 114.4 192 39.6
Hma1.2p1_1768F.1_g301530 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 1.5e-23 114.0 148 44.6
Lj6C375T0 Lonicera japonica HOM05D004865 ORTHO05D005949 1.9e-23 113.6 153 41.2
Sc24g0002410 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.6e-23 112.1 194 40.2
Sc22g0001740 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.6e-22 110.5 197 38.6
Prupe.1G577300 Prunus persica HOM05D004865 ORTHO05D005949 6.2e-22 108.6 166 42.2
Sc09g0006530 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.1e-21 107.8 195 36.9
FvH4_6g36010 Fragaria vesca HOM05D004865 ORTHO05D005949 2.3e-21 106.7 194 36.6
Sc09g0006330 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.1e-21 106.3 195 36.9
Lj6P373T4 Lonicera japonica HOM05D004865 ORTHO05D005949 4.0e-21 105.9 141 45.4
EL10As6g23632 Beta vulgaris HOM05D004865 ORTHO05D005949 5.2e-21 105.5 195 34.9
EL10As6g23631 Beta vulgaris HOM05D004865 ORTHO05D005949 6.8e-21 105.1 183 37.2
MD17G1148100 Malus domestica HOM05D004865 ORTHO05D005949 1.2e-20 104.4 161 42.9
MD17G1148200 Malus domestica HOM05D004865 ORTHO05D005949 1.2e-20 104.4 161 42.9
Duzib212G1045 Durio zibethinus HOM05D004865 ORTHO05D005949 2.6e-20 103.2 194 35.1
Sc06g0005920 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.6e-20 103.2 195 37.4
Lj6P379T11 Lonicera japonica HOM05D004865 ORTHO05D005949 5.8e-20 102.1 141 44.0
AUR62012544 Chenopodium quinoa HOM05D004865 ORTHO05D005949 7.5e-20 101.7 197 34.0
Lj6P378T3 Lonicera japonica HOM05D004865 ORTHO05D005949 9.8e-20 101.3 141 43.3
Gohir.A10G138700 Gossypium hirsutum HOM05D004865 ORTHO05D005949 6.4e-19 98.6 200 31.5
Gohir.D10G128100 Gossypium hirsutum HOM05D004865 ORTHO05D005949 6.4e-19 98.6 200 31.5
Gorai.011G141300 Gossypium raimondii HOM05D004865 ORTHO05D005949 6.4e-19 98.6 200 31.5
Lj6P371T8 Lonicera japonica HOM05D004865 ORTHO05D005949 1.1e-18 97.8 141 41.8
FAN09G4882 Fragaria x ananassa HOM05D004865 ORTHO05D005949 2.4e-18 96.7 232 34.5
Sc22g0001710 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.1e-18 95.1 197 38.1
Sc22g0001760 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.1e-18 95.1 196 38.8
Sc22g0001750 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.1e-17 93.6 179 39.1
SGA_v2.0_scaffold11G05644 Striga asiatica HOM05D004865 ORTHO05D005949 5.1e-16 89.0 207 33.8
MELO3C031484.2 Cucumis melo HOM05D004865 ORTHO05D005949 6.6e-16 88.6 204 33.3
Sc22g0001730 Simmondsia chinensis HOM05D004865 ORTHO05D005949 8.6e-16 88.2 197 37.6
EL10Ac8g20499 Beta vulgaris HOM05D004865 ORTHO05D005949 1.5e-15 87.4 191 30.9
ClCG11G011710 Citrullus lanatus HOM05D004865 ORTHO05D034719 2.5e-15 86.7 203 34.0
Sc23g0005380 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.5e-15 86.7 178 34.8
Sc22g0001720 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.6e-15 85.5 169 37.9
AUR62014652 Chenopodium quinoa HOM05D004865 ORTHO05D005949 7.3e-15 85.1 166 36.7
Zm00001eb137370 Zea mays HOM05D004865 ORTHO05D005949 7.3e-15 85.1 218 30.7
FAN14G5541 Fragaria x ananassa HOM05D004865 ORTHO05D005949 9.5e-15 84.7 106 45.3
AUR62036568 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.2e-14 84.3 182 30.8
Lsat_1_v5_gn_0_11001 Lactuca sativa HOM05D004865 ORTHO05D005949 1.2e-14 84.3 192 31.8
Lj1P506T10 Lonicera japonica HOM05D004865 ORTHO05D005949 1.2e-14 84.3 142 40.1
Lj1P515T6 Lonicera japonica HOM05D004865 ORTHO05D005949 1.2e-14 84.3 142 40.1
Sc17g0004370 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.2e-14 84.3 165 38.2
Lj1P501T11 Lonicera japonica HOM05D004865 ORTHO05D005949 2.8e-14 83.2 131 41.2
Lj1P506T13 Lonicera japonica HOM05D004865 ORTHO05D005949 2.8e-14 83.2 131 41.2
DCAR_015954 Daucus carota HOM05D004865 ORTHO05D005949 4.7e-14 82.4 182 31.3
AUR62012547 Chenopodium quinoa HOM05D004865 ORTHO05D005949 6.2e-14 82.0 193 30.6
AUR62031151 Chenopodium quinoa HOM05D004865 ORTHO05D005949 6.2e-14 82.0 182 29.1
Zm00001eb137430 Zea mays HOM05D004865 ORTHO05D005949 8.1e-14 81.6 215 30.2
Ah.06g181840 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.1e-13 81.3 162 35.8
ECA233G0690 Erigeron canadensis HOM05D000041 ORTHO05D000452 2.3e-13 80.1 195 29.7
FAN14G3467 Fragaria x ananassa HOM05D004865 ORTHO05D005949 4.0e-13 79.3 106 43.4
HanXRQChr03g0085651 Helianthus annuus HOM05D004865 ORTHO05D005949 5.2e-13 79.0 217 29.0
Sc24g0002440 Simmondsia chinensis HOM05D004865 ORTHO05D005949 9.9e-12 74.7 128 38.3
AUR62044724 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.4e-10 70.1 170 34.7
ECA233G6014 Erigeron canadensis HOM05D004865 ORTHO05D005949 3.2e-10 69.7 159 32.7
HanXRQChr03g0060851 Helianthus annuus HOM05D004865 ORTHO05D005949 3.2e-10 69.7 166 31.3
HanXRQChr03g0060861 Helianthus annuus HOM05D004865 ORTHO05D005949 3.2e-10 69.7 166 31.3
AUR62014649 Chenopodium quinoa HOM05D004865 ORTHO05D005949 7.1e-10 68.6 157 34.4
Os04g0308500 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 9.2e-10 68.2 213 28.6
Os04g0310100 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 9.2e-10 68.2 213 28.6
Sed0017379 Sechium edule HOM05D004865 ORTHO05D005949 9.2e-10 68.2 161 31.1
AUR62027396 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.2e-09 67.8 149 28.2
CsaV3_4G030090 Cucumis sativus L. HOM05D004865 ORTHO05D005949 1.2e-09 67.8 66 48.5
Sc16g0002940 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.1e-09 67.0 109 38.5
ECA233G0596 Erigeron canadensis HOM05D004865 ORTHO05D000001 3.5e-09 66.2 163 30.1
HanXRQChr17g0555801 Helianthus annuus HOM05D004865 ORTHO05D005949 6.0e-09 65.5 181 30.9
HanXRQChr17g0555831 Helianthus annuus HOM05D004865 ORTHO05D005949 6.0e-09 65.5 179 31.3
ECA233G2698 Erigeron canadensis HOM05D004865 ORTHO05D005949 1.3e-08 64.3 165 29.7
Sed0020964 Sechium edule HOM05D004865 ORTHO05D005949 3.0e-08 63.2 106 35.8
ECA233G5215 Erigeron canadensis HOM05D004865 ORTHO05D005949 3.9e-08 62.8 182 27.5
AUR62012550 Chenopodium quinoa HOM05D004865 ORTHO05D005949 6.6e-08 62.0 184 28.3
AUR62014650 Chenopodium quinoa HOM05D004865 ORTHO05D005949 8.6e-08 61.6 98 41.8
Ah.02g112980 Amaranthus hybridus HOM05D014146 ORTHO05D015816 2.5e-07 60.1 152 33.6
Gohir.D05G285700 Gossypium hirsutum HOM05D009645 ORTHO05D011514 2.5e-07 60.1 125 28.8
Gorai.009G300700 Gossypium raimondii HOM05D009645 ORTHO05D011514 2.5e-07 60.1 125 28.8
ECA233G1731 Erigeron canadensis HOM05D004865 ORTHO05D005949 3.3e-07 59.7 129 31.8
Duzib114G0748 Durio zibethinus HOM05D009645 ORTHO05D019099 9.6e-07 58.2 94 36.2
AUR62016191 Chenopodium quinoa HOM05D009434 ORTHO05D011504 1.2e-06 57.8 133 29.3
Duzib128G0597 Durio zibethinus HOM05D014226 ORTHO05D016989 1.2e-06 57.8 139 30.2
Duzib128G0362 Durio zibethinus HOM05D014226 ORTHO05D016989 2.1e-06 57.0 139 30.2
Duzib128G0451 Durio zibethinus HOM05D014226 ORTHO05D016989 2.1e-06 57.0 139 30.2
Duzib128G0495 Durio zibethinus HOM05D014226 ORTHO05D016989 2.1e-06 57.0 139 30.2
Duzib128G1533 Durio zibethinus HOM05D014226 ORTHO05D016989 2.1e-06 57.0 139 30.2
Duzib151G0560 Durio zibethinus HOM05D014226 ORTHO05D016989 2.1e-06 57.0 139 30.2
AUR62014648 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.8e-06 56.6 127 35.4
Gohir.A05G284801 Gossypium hirsutum HOM05D009645 ORTHO05D011514 3.6e-06 56.2 93 32.3
Sc05g0005670 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.7e-06 55.8 76 44.7
Gohir.A05G284700 Gossypium hirsutum HOM05D009645 ORTHO05D036248 8.1e-06 55.1 93 31.2
Gohir.D05G285600 Gossypium hirsutum HOM05D009645 ORTHO05D036248 8.1e-06 55.1 93 31.2
Gorai.009G300600 Gossypium raimondii HOM05D009645 ORTHO05D036248 8.1e-06 55.1 93 31.2


User provided reference genes

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