Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 9.0e-95 350.9 279 100.0
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 2.0e-94 349.7 279 99.6
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 7.2e-68 261.5 275 83.3
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 1.1e-65 254.2 269 84.0
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 4.4e-65 252.3 268 84.7
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 4.8e-64 248.8 269 84.0
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 5.3e-63 245.4 267 83.1
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 2.6e-62 243.0 274 78.8
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 2.6e-62 243.0 268 82.5
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 3.5e-62 242.7 264 81.1
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 3.5e-62 242.7 264 81.1
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 3.5e-62 242.7 270 84.1
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 5.9e-62 241.9 264 81.1
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 5.9e-62 241.9 270 83.3
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 7.7e-62 241.5 264 80.7
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 1.0e-61 241.1 269 80.7
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 1.7e-61 240.4 270 83.0
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 2.2e-61 240.0 262 84.0
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 6.5e-61 238.4 267 80.1
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 1.1e-60 237.7 272 81.6
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 1.5e-60 237.3 267 82.4
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 1.9e-60 236.9 272 73.2
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 1.9e-60 236.9 270 81.5
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 2.5e-60 236.5 266 79.7
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 2.5e-60 236.5 262 82.8
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 3.2e-60 236.1 267 82.4
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 4.2e-60 235.7 270 79.6
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 5.5e-60 235.3 272 83.5
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 7.2e-60 235.0 265 81.5
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 1.2e-59 234.2 267 81.6
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 1.6e-59 233.8 248 86.3
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 2.7e-59 233.0 271 80.1
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 2.7e-59 233.0 266 81.2
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 2.7e-59 233.0 262 82.4
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 2.7e-59 233.0 262 82.4
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 8.0e-59 231.5 271 80.8
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 1.0e-58 231.1 267 82.0
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 1.0e-58 231.1 264 79.9
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.4e-58 230.7 267 80.9
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.4e-58 230.7 267 80.9
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 1.8e-58 230.3 269 79.2
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 2.3e-58 229.9 276 78.3
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 2.3e-58 229.9 271 78.6
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 3.0e-58 229.6 267 79.4
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 3.0e-58 229.6 267 79.4
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 3.0e-58 229.6 271 80.1
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 3.0e-58 229.6 271 80.4
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 6.7e-58 228.4 274 56.2
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 8.8e-58 228.0 263 82.5
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 1.2e-57 227.6 267 76.8
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.2e-57 227.6 268 81.3
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 2.0e-57 226.9 270 80.4
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 2.0e-57 226.9 267 77.2
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 3.3e-57 226.1 267 81.3
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 3.3e-57 226.1 267 81.3
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 5.7e-57 225.3 266 78.9
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 9.7e-57 224.6 267 80.5
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 1.3e-56 224.2 267 81.6
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 1.3e-56 224.2 280 71.4
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 1.7e-56 223.8 265 82.3
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 2.8e-56 223.0 277 77.6
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 3.7e-56 222.6 264 80.7
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 4.8e-56 222.2 280 73.6
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.4e-55 220.7 268 78.4
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 1.8e-55 220.3 271 80.1
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 1.8e-55 220.3 262 78.6
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 1.8e-55 220.3 263 75.3
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.8e-55 220.3 268 78.0
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 3.1e-55 219.5 262 79.8
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 5.3e-55 218.8 244 87.3
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 1.6e-54 217.2 250 83.2
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 2.7e-54 216.5 276 76.1
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 1.0e-53 214.5 272 76.1
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 1.3e-53 214.2 269 75.5
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 1.3e-53 214.2 249 80.3
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 1.3e-53 214.2 272 77.2
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 1.3e-53 214.2 268 76.5
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 1.7e-53 213.8 243 85.2
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 2.2e-53 213.4 271 76.8
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 2.2e-53 213.4 267 75.7
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 2.9e-53 213.0 267 70.8
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 3.8e-53 212.6 249 82.7
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 3.8e-53 212.6 275 75.3
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 6.5e-53 211.8 242 87.2
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 6.5e-53 211.8 262 74.0
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 6.5e-53 211.8 262 74.0
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 8.5e-53 211.5 270 75.9
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 8.5e-53 211.5 267 77.9
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 8.5e-53 211.5 270 74.1
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 1.1e-52 211.1 264 77.7
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 1.1e-52 211.1 267 79.4
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 1.5e-52 210.7 270 76.3
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 1.9e-52 210.3 267 76.0
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 1.9e-52 210.3 267 76.8
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 2.5e-52 209.9 269 75.8
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 2.5e-52 209.9 267 77.5
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 2.5e-52 209.9 267 77.5
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 2.5e-52 209.9 268 77.6
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 3.2e-52 209.5 276 74.3
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 3.2e-52 209.5 231 87.0
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 3.2e-52 209.5 267 75.3
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 3.2e-52 209.5 270 76.7
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 4.2e-52 209.1 266 77.1
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 7.2e-52 208.4 270 76.3
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 7.2e-52 208.4 268 75.7
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 2.1e-51 206.8 262 77.1
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 2.7e-51 206.5 266 76.7
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 6.1e-51 205.3 270 75.6
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 8.0e-51 204.9 271 74.9
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 8.0e-51 204.9 271 74.9
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 1.8e-50 203.8 269 76.2
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 1.8e-50 203.8 272 76.1
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 1.8e-50 203.8 269 76.2
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 1.8e-50 203.8 272 76.1
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 2.3e-50 203.4 271 74.5
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 2.3e-50 203.4 269 75.8
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 4.0e-50 202.6 238 86.6
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 5.2e-50 202.2 271 74.5
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 1.5e-49 200.7 269 76.2
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 2.0e-49 200.3 271 74.9
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 2.6e-49 199.9 256 77.3
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 4.4e-49 199.1 267 74.9
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 5.7e-49 198.7 270 73.7
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 2.2e-48 196.8 264 75.8
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 1.8e-47 193.7 268 75.7
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 2.4e-47 193.4 267 66.7
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 1.2e-46 191.0 258 77.1
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 1.2e-46 191.0 268 75.4
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 2.0e-46 190.3 229 84.3
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 4.5e-46 189.1 257 70.4
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 1.3e-45 187.6 261 72.0
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 3.8e-45 186.0 269 70.6
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 3.8e-45 186.0 264 73.9
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 8.6e-45 184.9 226 82.3
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 1.5e-44 184.1 229 83.4
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 1.9e-44 183.7 263 73.0
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 6.1e-43 178.7 262 70.6
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.8e-42 177.2 278 39.2
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 2.8e-40 169.9 266 69.5
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 2.3e-37 160.2 267 56.9
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 3.8e-37 159.5 236 78.0
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 5.2e-34 149.1 219 78.5
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 3.7e-32 142.9 208 80.8
vmacro04599 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 3.2e-31 139.8 96 70.8
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 1.0e-29 134.8 92 71.7
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 1.3e-29 134.4 83 77.1
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 9.5e-28 128.3 85 74.1
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 2.1e-27 127.1 286 62.6
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 2.3e-26 123.6 281 63.0
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 4.0e-26 122.9 267 55.8
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 3.4e-25 119.8 107 58.9
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 6.0e-22 109.0 86 67.4
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 1.7e-21 107.5 268 56.0
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 2.3e-21 107.1 74 71.6
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 2.3e-21 107.1 82 62.2
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 2.1e-14 84.0 66 69.7
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 8.4e-08 62.0 252 56.0
HanXRQChr05g0162291 Helianthus annuus HOM05D004527 ORTHO05D005335 1.2e-06 58.2 66 51.5
Eucgr.B03306 Eucalyptus grandis HOM05D000168 ORTHO05D000811 4.6e-06 56.2 99 38.4
ATR0730G160 Amborella trichopoda HOM05D004527 ORTHO05D005335 7.8e-06 55.5 56 46.4
Nn4g22707 Nelumbo nucifera HOM05D000168 ORTHO05D000811 7.8e-06 55.5 105 38.1


User provided reference genes

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