Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027518 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D111919 5.2e-60 234.2 117 100.0
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 2.1e-08 62.8 52 55.8
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 3.5e-08 62.0 27 100.0
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 3.5e-08 62.0 27 100.0
vmacro12695 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 3.5e-08 62.0 27 100.0
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 6.0e-08 61.2 35 77.1
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 6.0e-08 61.2 38 73.7
Ciclev10030068m.g Citrus clementina HOM05D005112 ORTHO05D006681 7.8e-08 60.8 47 61.7
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 7.8e-08 60.8 27 96.3
Nitab4.5_0002123g0050 Nicotiana tabacum HOM05D005112 ORTHO05D006681 7.8e-08 60.8 31 83.9
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 7.8e-08 60.8 31 83.9
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 7.8e-08 60.8 31 83.9
Aqoxy2G00366 Aquilegia oxysepala HOM05D005112 ORTHO05D006681 2.3e-07 59.3 27 85.2
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 2.3e-07 59.3 30 83.3
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 2.3e-07 59.3 27 96.3
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 3.9e-07 58.5 27 92.6
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 3.9e-07 58.5 27 92.6
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 3.9e-07 58.5 27 85.2
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 3.9e-07 58.5 28 89.3
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 3.9e-07 58.5 27 96.3
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 5.1e-07 58.2 27 92.6
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 6.6e-07 57.8 27 96.3
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 6.6e-07 57.8 31 74.2
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 6.6e-07 57.8 27 96.3
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 6.6e-07 57.8 48 58.3
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 8.6e-07 57.4 27 92.6
Sc14g0005780 Simmondsia chinensis HOM05D005112 ORTHO05D006681 8.6e-07 57.4 27 85.2
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 1.1e-06 57.0 36 72.2
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 1.1e-06 57.0 36 72.2
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 1.1e-06 57.0 31 83.9
ATR0745G067 Amborella trichopoda HOM05D005112 ORTHO05D006681 1.5e-06 56.6 28 85.7
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 1.5e-06 56.6 31 80.6
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 1.5e-06 56.6 27 85.2
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 1.9e-06 56.2 31 83.9
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 1.9e-06 56.2 48 54.2
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 1.9e-06 56.2 27 92.6
Os01g0952600 Oryza sativa ssp. japonica HOM05D005112 ORTHO05D006681 2.5e-06 55.8 27 88.9
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 3.3e-06 55.5 27 92.6
RcHm_v2.0_Chr1g0324211 Rosa chinensis HOM05D005112 ORTHO05D006681 3.3e-06 55.5 27 92.6
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 3.3e-06 55.5 27 92.6
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 3.3e-06 55.5 27 92.6
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 4.3e-06 55.1 27 88.9
Zm00001eb140720 Zea mays HOM05D005112 ORTHO05D006681 4.3e-06 55.1 42 59.5
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 5.6e-06 54.7 27 85.2
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 5.6e-06 54.7 27 85.2
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 5.6e-06 54.7 27 85.2
unitig_22.g5425 Utricularia gibba HOM05D005112 ORTHO05D006681 5.6e-06 54.7 48 56.2
Prupe.2G035600 Prunus persica HOM05D005112 ORTHO05D006681 7.3e-06 54.3 27 85.2
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 7.3e-06 54.3 27 85.2
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 9.5e-06 53.9 36 69.4
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 9.5e-06 53.9 36 69.4
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 9.5e-06 53.9 27 85.2
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 9.5e-06 53.9 47 55.3
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 9.5e-06 53.9 41 63.4
Migut.B01228 Erythranthe guttata HOM05D005112 ORTHO05D006681 9.5e-06 53.9 27 85.2
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 9.5e-06 53.9 27 85.2


User provided reference genes

Program Settings