Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027507 Camellia sinensis var. sinensis HOM05D003129 ORTHO05D004326 9.7e-59 229.9 117 100.0
Rhsim02G0138200 Rhododendron simsii HOM05D003129 ORTHO05D000043 6.3e-34 147.5 90 84.4
Rhsim02G0138500 Rhododendron simsii HOM05D003129 ORTHO05D004326 5.4e-33 144.4 89 85.4
Hma1.2p1_0155F.1_g068510 Hydrangea macrophylla HOM05D003129 ORTHO05D004326 2.0e-32 142.5 89 83.1
vmacro15954 Vaccinium macrocarpon HOM05D003129 ORTHO05D004326 1.7e-31 139.4 88 83.0
Dinv40631 Davidia involucrata HOM05D003129 ORTHO05D004326 2.3e-31 139.0 89 80.9
Nn1g06337 Nelumbo nucifera HOM05D003129 ORTHO05D004326 2.3e-31 139.0 89 79.8
TAR624G0766 Trochodendron aralioides HOM05D003129 ORTHO05D004326 2.9e-31 138.7 89 80.9
Hma1.2p1_0608F.1_g188220 Hydrangea macrophylla HOM05D003129 ORTHO05D004326 8.6e-31 137.1 85 83.5
Nn1g04301 Nelumbo nucifera HOM05D003129 ORTHO05D004326 1.5e-30 136.3 89 77.5
GSVIVG01021154001 Vitis vinifera HOM05D003129 ORTHO05D004326 2.5e-30 135.6 89 78.7
Lj2A294T71 Lonicera japonica HOM05D003129 ORTHO05D004326 7.3e-30 134.0 89 77.5
Potri.011G062500 Populus trichocarpa HOM05D003129 ORTHO05D004326 1.6e-29 132.9 89 77.5
CAN.G361.6 Capsicum annuum HOM05D003129 ORTHO05D004326 3.6e-29 131.7 89 75.3
Thecc.06G176900 Theobroma cacao HOM05D003129 ORTHO05D004326 3.6e-29 131.7 89 75.3
TAR627G0274 Trochodendron aralioides HOM05D003129 ORTHO05D004326 3.6e-29 131.7 88 78.4
Gohir.A10G029400 Gossypium hirsutum HOM05D003129 ORTHO05D004326 4.7e-29 131.3 89 75.3
Gohir.D10G029900 Gossypium hirsutum HOM05D003129 ORTHO05D004326 4.7e-29 131.3 89 75.3
Gorai.011G031800 Gossypium raimondii HOM05D003129 ORTHO05D004326 4.7e-29 131.3 89 75.3
Potri.004G052300 Populus trichocarpa HOM05D003129 ORTHO05D004326 6.1e-29 131.0 89 75.3
Solyc10g008800.4 Solanum lycopersicum HOM05D003129 ORTHO05D004326 6.1e-29 131.0 89 75.3
Sopen10g004580 Solanum pennellii HOM05D003129 ORTHO05D004326 6.1e-29 131.0 89 75.3
Cc02_g14350 Coffea canephora HOM05D003129 ORTHO05D004326 1.4e-28 129.8 89 75.3
Sabra04G0033100 Salix brachista HOM05D003129 ORTHO05D004326 1.4e-28 129.8 89 73.0
Sabra11G0044300 Salix brachista HOM05D003129 ORTHO05D004326 1.8e-28 129.4 89 74.2
CiPaw.09G066600 Carya illinoinensis HOM05D003129 ORTHO05D004326 3.0e-28 128.6 89 74.2
CiPaw.10G055300 Carya illinoinensis HOM05D003129 ORTHO05D004326 5.2e-28 127.9 89 74.2
Dinv14957 Davidia involucrata HOM05D003129 ORTHO05D004326 5.2e-28 127.9 89 74.2
Oeu062329.1 Olea europaea HOM05D003129 ORTHO05D004326 5.2e-28 127.9 87 75.9
CANSAT35G1487 Cannabis sativa HOM05D003129 ORTHO05D004326 6.8e-28 127.5 85 76.5
Manes.17G052000 Manihot esculenta HOM05D003129 ORTHO05D004326 8.9e-28 127.1 87 75.9
Migut.M01074 Erythranthe guttata HOM05D003129 ORTHO05D004326 1.5e-27 126.3 87 74.7
Duzib235G0248 Durio zibethinus HOM05D003129 ORTHO05D004326 2.0e-27 125.9 89 71.9
MSTRG.15833 Avicennia marina HOM05D003129 ORTHO05D004326 2.6e-27 125.6 88 72.7
Haze_06298 Corylus avellana HOM05D003129 ORTHO05D004326 2.6e-27 125.6 89 73.0
Thhalv10007287m.g Eutrema salsugineum HOM05D003129 ORTHO05D004326 2.6e-27 125.6 108 61.1
Prupe.4G056400 Prunus persica HOM05D003129 ORTHO05D004326 2.6e-27 125.6 89 74.2
TWI63G0550 Tripterygium wilfordii HOM05D003129 ORTHO05D004326 2.6e-27 125.6 87 74.7
RcHm_v2.0_Chr5g0009911 Rosa chinensis HOM05D003129 ORTHO05D004326 3.4e-27 125.2 89 73.0
Cpa.g.sc7.28 Carica papaya HOM05D003129 ORTHO05D004326 7.5e-27 124.0 89 70.8
Duzib192G0848 Durio zibethinus HOM05D003129 ORTHO05D004326 7.5e-27 124.0 89 71.9
Gorai.010G242700 Gossypium raimondii HOM05D003129 ORTHO05D004326 7.5e-27 124.0 88 72.7
MD10G1285200 Malus domestica HOM05D003129 ORTHO05D004326 7.5e-27 124.0 89 71.9
GSVIVG01014247001 Vitis vinifera HOM05D003129 ORTHO05D004326 7.5e-27 124.0 91 71.4
Aqoxy1G02212 Aquilegia oxysepala HOM05D003129 ORTHO05D004326 9.8e-27 123.6 89 70.8
DCAR_006587 Daucus carota HOM05D003129 ORTHO05D004326 9.8e-27 123.6 87 73.6
HanXRQChr11g0327221 Helianthus annuus HOM05D003129 ORTHO05D004326 9.8e-27 123.6 101 64.4
Lsat_1_v5_gn_4_50661 Lactuca sativa HOM05D003129 ORTHO05D004326 9.8e-27 123.6 89 71.9
Nitab4.5_0002114g0030 Nicotiana tabacum HOM05D003129 ORTHO05D004326 1.3e-26 123.2 80 78.8
THA.LOC104814245 Tarenaya hassleriana HOM05D003129 ORTHO05D004326 1.3e-26 123.2 89 69.7
Ciclev10014801m.g Citrus clementina HOM05D003129 ORTHO05D004326 2.2e-26 122.5 89 67.4
Eucgr.D00571 Eucalyptus grandis HOM05D003129 ORTHO05D004326 2.2e-26 122.5 89 68.5
FvH4_3g08240 Fragaria vesca HOM05D003129 ORTHO05D004326 2.2e-26 122.5 85 75.3
FAN11G2423 Fragaria x ananassa HOM05D003129 ORTHO05D004326 2.2e-26 122.5 85 75.3
FAN16G1697 Fragaria x ananassa HOM05D003129 ORTHO05D004326 2.2e-26 122.5 85 75.3
Gohir.D06G208800 Gossypium hirsutum HOM05D003129 ORTHO05D004326 2.2e-26 122.5 88 71.6
Sc05g0007260 Simmondsia chinensis HOM05D003129 ORTHO05D004326 2.2e-26 122.5 91 71.4
PGR004G1912 Punica granatum HOM05D003129 ORTHO05D004326 2.9e-26 122.1 89 70.8
Sed0018741 Sechium edule HOM05D003129 ORTHO05D004326 2.9e-26 122.1 85 74.1
FAN21G0899 Fragaria x ananassa HOM05D003129 ORTHO05D004326 3.7e-26 121.7 85 75.3
FAN25G1535 Fragaria x ananassa HOM05D003129 ORTHO05D004326 3.7e-26 121.7 85 75.3
Gohir.A06G200950 Gossypium hirsutum HOM05D003129 ORTHO05D004326 3.7e-26 121.7 88 71.6
Gohir.A06G201000 Gossypium hirsutum HOM05D003129 ORTHO05D004326 3.7e-26 121.7 88 71.6
TWI38G0456 Tripterygium wilfordii HOM05D003129 ORTHO05D004326 3.7e-26 121.7 87 71.3
MD05G1306200 Malus domestica HOM05D003129 ORTHO05D004326 6.4e-26 120.9 89 69.7
ClCG01G023490 Citrullus lanatus HOM05D003129 ORTHO05D004326 8.3e-26 120.6 85 74.1
MELO3C007237.2 Cucumis melo HOM05D003129 ORTHO05D004326 8.3e-26 120.6 89 68.5
CsaV3_6G050610 Cucumis sativus L. HOM05D003129 ORTHO05D004326 8.3e-26 120.6 89 68.5
ECA234G1267 Erigeron canadensis HOM05D003129 ORTHO05D004326 8.3e-26 120.6 89 69.7
Thhalv10016466m.g Eutrema salsugineum HOM05D003129 ORTHO05D004326 8.3e-26 120.6 88 70.5
Atru.chr10.1742 Acer truncatum HOM05D003129 ORTHO05D004326 1.1e-25 120.2 85 70.6
BcaC01g05811 Brassica carinata HOM05D003129 ORTHO05D004326 1.1e-25 120.2 85 71.8
A03p19000 Brassica napus HOM05D003129 ORTHO05D004326 1.1e-25 120.2 85 71.8
C03p22160 Brassica napus HOM05D003129 ORTHO05D004326 1.1e-25 120.2 85 71.8
BolC3t14601H Brassica oleracea HOM05D003129 ORTHO05D004326 1.1e-25 120.2 85 71.8
BraA03t11158Z Brassica rapa HOM05D003129 ORTHO05D004326 1.1e-25 120.2 85 71.8
COL.COLO4_31382 Corchorus olitorius HOM05D003129 ORTHO05D004326 1.4e-25 119.8 89 67.4
SalBow8G3208 Salvia bowleyana HOM05D003129 ORTHO05D004326 1.9e-25 119.4 87 70.1
Sp1g24960 Schrenkiella parvula HOM05D003129 ORTHO05D004326 1.9e-25 119.4 108 60.2
MSTRG.14212 Avicennia marina HOM05D003129 ORTHO05D004326 2.4e-25 119.0 88 68.2
BcaB01g03907 Brassica carinata HOM05D003129 ORTHO05D004326 2.4e-25 119.0 85 70.6
CARHR128120 Cardamine hirsuta HOM05D003129 ORTHO05D004326 2.4e-25 119.0 88 69.3
TWI38G1536 Tripterygium wilfordii HOM05D003129 ORTHO05D004326 2.4e-25 119.0 87 70.1
CSS0050257 Camellia sinensis var. sinensis HOM05D003129 ORTHO05D004326 4.1e-25 118.2 89 67.4
Ca_26044_v3 Cicer arietinum L. HOM05D003129 ORTHO05D004326 7.0e-25 117.5 89 67.4
Glyma.07G203600 Glycine max HOM05D003129 ORTHO05D004326 7.0e-25 117.5 88 68.2
Glyma.13G172200 Glycine max HOM05D003129 ORTHO05D004326 7.0e-25 117.5 88 68.2
Medtr4g087935 Medicago truncatula HOM05D003129 ORTHO05D004326 7.0e-25 117.5 88 67.0
Psat7g118240 Pisum sativum HOM05D003129 ORTHO05D004326 7.0e-25 117.5 88 67.0
Carub.0004s1567 Capsella rubella HOM05D003129 ORTHO05D004326 9.2e-25 117.1 101 60.4
Lj4g0011162 Lotus japonicus HOM05D003129 ORTHO05D004326 9.2e-25 117.1 87 69.0
Lalb_Chr05g0218661 Lupinus albus HOM05D003129 ORTHO05D004326 9.2e-25 117.1 85 70.6
AL4G29920 Arabidopsis lyrata HOM05D003129 ORTHO05D004326 1.2e-24 116.7 88 67.0
AT2G34040 Arabidopsis thaliana HOM05D003129 ORTHO05D004326 1.2e-24 116.7 88 67.0
BolC4t23083H Brassica oleracea HOM05D003129 ORTHO05D004326 1.2e-24 116.7 88 67.0
Haze_06313 Corylus avellana HOM05D003129 ORTHO05D004326 3.5e-24 115.2 77 76.6
Sp4g16390 Schrenkiella parvula HOM05D003129 ORTHO05D004326 4.6e-24 114.8 88 67.0
CSS0027425 Camellia sinensis var. sinensis HOM05D003129 ORTHO05D004326 6.0e-24 114.4 89 66.3
CARHR028240 Cardamine hirsuta HOM05D003129 ORTHO05D004326 6.0e-24 114.4 88 65.9
AUR62014921 Chenopodium quinoa HOM05D003129 ORTHO05D004326 6.0e-24 114.4 89 69.7
AUR62031128 Chenopodium quinoa HOM05D003129 ORTHO05D004326 6.0e-24 114.4 89 69.7
TPR.G16267 Trifolium pratense HOM05D003129 ORTHO05D004326 6.0e-24 114.4 85 67.1
AL1G42740 Arabidopsis lyrata HOM05D003129 ORTHO05D004326 7.8e-24 114.0 88 65.9
Ca_25382_v3 Cicer arietinum L. HOM05D003129 ORTHO05D004326 7.8e-24 114.0 88 67.0
A05p11620 Brassica napus HOM05D003129 ORTHO05D004326 1.0e-23 113.6 84 69.0
BraA05t20109Z Brassica rapa HOM05D003129 ORTHO05D004326 1.0e-23 113.6 84 69.0
Carub.0001s2722 Capsella rubella HOM05D003129 ORTHO05D004326 1.3e-23 113.2 88 67.0
Lj1C835G5 Lonicera japonica HOM05D003129 ORTHO05D004326 1.3e-23 113.2 91 67.0
Lalb_Chr09g0327941 Lupinus albus HOM05D003129 ORTHO05D004326 1.3e-23 113.2 88 64.8
SalBow7G0623 Salvia bowleyana HOM05D003129 ORTHO05D004326 1.3e-23 113.2 87 66.7
SalBow7G1178 Salvia bowleyana HOM05D003129 ORTHO05D004326 1.3e-23 113.2 87 66.7
Sed0013050 Sechium edule HOM05D003129 ORTHO05D004326 1.7e-23 112.8 85 67.1
arahy.Tifrunner.gnm1.ann1.32PFVB Arachis hypogaea HOM05D003129 ORTHO05D004326 2.3e-23 112.5 88 63.6
arahy.Tifrunner.gnm1.ann1.X0U75U Arachis hypogaea HOM05D003129 ORTHO05D004326 2.3e-23 112.5 88 63.6
Phvul.003G057200 Phaseolus vulgaris HOM05D003129 ORTHO05D004326 2.3e-23 112.5 88 65.9
AT1G29030 Arabidopsis thaliana HOM05D003129 ORTHO05D004326 3.0e-23 112.1 89 62.9
DCAR_019584 Daucus carota HOM05D003129 ORTHO05D004326 3.0e-23 112.1 88 65.9
Eucgr.D00557 Eucalyptus grandis HOM05D003129 ORTHO05D004326 3.9e-23 111.7 77 72.7
Hund21191 Selenicereus undatus HOM05D003129 ORTHO05D004326 3.9e-23 111.7 89 66.3
Migut.H01970 Erythranthe guttata HOM05D003129 ORTHO05D004326 5.0e-23 111.3 89 64.0
HanXRQChr15g0481311 Helianthus annuus HOM05D003129 ORTHO05D004326 5.0e-23 111.3 89 65.2
unitig_0.g2268 Utricularia gibba HOM05D003129 ORTHO05D004326 5.0e-23 111.3 87 65.5
vmacro09507 Vaccinium macrocarpon HOM05D003129 ORTHO05D004326 5.0e-23 111.3 89 65.2
MBI07_g06431_MAGBIO Magnolia biondii HOM05D003129 ORTHO05D000022 6.6e-23 110.9 87 66.7
Lsat_1_v5_gn_2_1061 Lactuca sativa HOM05D003129 ORTHO05D004326 1.5e-22 109.8 77 75.3
Rhsim04G0023800 Rhododendron simsii HOM05D003129 ORTHO05D004326 1.5e-22 109.8 89 64.0
VMungo0251G0702 Vigna mungo HOM05D003129 ORTHO05D004326 1.5e-22 109.8 88 64.8
Peaxi162Scf00027g00106 Petunia axillaris HOM05D003129 ORTHO05D004326 1.9e-22 109.4 87 64.4
Cc05_g11500 Coffea canephora HOM05D003129 ORTHO05D004326 2.5e-22 109.0 87 64.4
ATR0602G129 Amborella trichopoda HOM05D003129 ORTHO05D004326 3.3e-22 108.6 87 64.4
Haze_06300 Corylus avellana HOM05D003129 ORTHO05D004326 4.3e-22 108.2 91 63.7
HanXRQChr04g0117191 Helianthus annuus HOM05D003129 ORTHO05D004326 4.3e-22 108.2 89 65.2
ECA236G4078 Erigeron canadensis HOM05D003129 ORTHO05D004326 7.3e-22 107.5 89 62.9
SGA_v2.0_scaffold130G34337 Striga asiatica HOM05D003129 ORTHO05D004326 1.2e-21 106.7 89 65.2
Solyc10g007150.4 Solanum lycopersicum HOM05D003129 ORTHO05D004326 1.6e-21 106.3 89 61.8
THA.LOC104812630 Tarenaya hassleriana HOM05D003129 ORTHO05D004326 1.6e-21 106.3 86 64.0
EL10Ac8g20476 Beta vulgaris HOM05D003129 ORTHO05D004326 2.1e-21 105.9 93 65.6
CAN.G1119.14 Capsicum annuum HOM05D003129 ORTHO05D004326 2.1e-21 105.9 89 59.6
Sopen10g003050 Solanum pennellii HOM05D003129 ORTHO05D004326 3.6e-21 105.1 89 60.7
CDE02G2353 Ceratophyllum demersum HOM05D003129 ORTHO05D004326 1.1e-20 103.6 90 63.3
HPP92_002946 Vanilla planifolia HOM05D003129 ORTHO05D004326 1.1e-20 103.6 86 62.8
Aa31LG9G13850 Aethionema arabicum HOM05D003129 ORTHO05D004326 1.8e-20 102.8 103 54.4
Aqoxy4G00539 Aquilegia oxysepala HOM05D003129 ORTHO05D004326 5.2e-20 101.3 89 57.3
Actinidia18785 Actinidia chinensis HOM05D003129 ORTHO05D004326 2.0e-19 99.4 89 58.4
unitig_52.g17399 Utricularia gibba HOM05D003129 ORTHO05D004326 2.0e-19 99.4 106 51.9
Actinidia35228 Actinidia chinensis HOM05D003129 ORTHO05D004326 4.4e-19 98.2 89 56.2
SGA_v2.0_scaffold70G23706 Striga asiatica HOM05D003129 ORTHO05D004326 4.4e-19 98.2 112 55.4
SHI34908 Sapria himalayana HOM05D003129 ORTHO05D004326 5.8e-19 97.8 87 59.8
PSO675G6268 Papaver somniferum HOM05D003129 ORTHO05D004326 7.5e-19 97.4 89 60.7
unitig_699.g19233 Utricularia gibba HOM05D003129 ORTHO05D004326 9.8e-19 97.1 86 60.5
Ah.10g033800 Amaranthus hybridus HOM05D003129 ORTHO05D004326 1.3e-18 96.7 87 64.4
Nitab4.5_0000383g0360 Nicotiana tabacum HOM05D003129 ORTHO05D004326 1.3e-18 96.7 121 47.1
Nitab4.5_0001208g0080 Nicotiana tabacum HOM05D003129 ORTHO05D004326 1.3e-18 96.7 121 47.1
PSO541G6176 Papaver somniferum HOM05D003129 ORTHO05D004326 6.4e-18 94.4 90 57.8
Mapoly0091s0056 Marchantia polymorpha HOM05D003129 ORTHO05D004326 1.9e-17 92.8 81 60.5
Sabra04G0033600 Salix brachista HOM05D003129 ORTHO05D004326 3.2e-17 92.0 62 75.8
Hma1.2p1_0660F.1_g197740 Hydrangea macrophylla HOM05D003129 ORTHO05D004326 5.4e-17 91.3 67 71.6
MBI06_g25719_MAGBIO Magnolia biondii HOM05D003129 ORTHO05D004326 2.1e-16 89.4 69 63.8
Oeu043093.1 Olea europaea HOM05D003129 ORTHO05D004326 3.5e-16 88.6 59 76.3
Zm00001eb203280 Zea mays HOM05D003129 ORTHO05D004326 3.9e-15 85.1 88 52.3
Os02g0313400 Oryza sativa ssp. japonica HOM05D003129 ORTHO05D004326 1.1e-14 83.6 89 51.7
AagrBONN_evm.TU.Sc2ySwM_228.5751 Anthoceros agrestis HOM05D003129 ORTHO05D004326 2.1e-13 79.3 90 48.9
Haze_06301 Corylus avellana HOM05D003129 ORTHO05D004326 2.1e-13 79.3 77 59.7
Zm00001eb235260 Zea mays HOM05D003129 ORTHO05D004326 2.8e-13 79.0 85 50.6
Haze_06317 Corylus avellana HOM05D003129 ORTHO05D004326 3.6e-13 78.6 50 76.0
Pp3c3_22040 Physcomitrium patens HOM05D003129 ORTHO05D004326 1.8e-12 76.3 83 54.2
Cfa000558 Carpinus fangiana HOM05D003129 ORTHO05D004326 4.0e-12 75.1 87 51.7
Actinidia07677 Actinidia chinensis HOM05D003129 ORTHO05D004326 1.2e-11 73.6 70 60.0
AT3G19515 Arabidopsis thaliana HOM05D003129 ORTHO05D004326 2.2e-10 69.3 91 45.1
CBR_g34638 Chara braunii HOM05D003129 ORTHO05D004326 9.2e-09 63.9 86 40.7
SGA_v2.0_scaffold66G22240 Striga asiatica HOM05D003129 ORTHO05D004326 1.6e-08 63.2 53 64.2
Peaxi162Scf00269g00314 Petunia axillaris HOM05D003129 ORTHO05D004326 3.5e-08 62.0 88 44.3
GSVIVG01021158001 Vitis vinifera HOM05D003129 ORTHO05D004326 3.5e-08 62.0 38 81.6
RcHm_v2.0_Chr1g0362691 Rosa chinensis HOM05D003129 ORTHO05D004326 1.3e-07 60.1 50 60.0
SMO364G0322 Selaginella moellendorffii HOM05D003129 ORTHO05D004326 1.9e-06 56.2 92 43.5


User provided reference genes

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