Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027504 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 9.6e-264 913.3 589 100.0
CSS0030730 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 9.6e-264 913.3 589 100.0
Rhsim05G0163600 Rhododendron simsii HOM05D004670 ORTHO05D008020 6.9e-161 571.6 601 73.0
Dinv17145 Davidia involucrata HOM05D004670 ORTHO05D008020 1.3e-140 504.2 551 71.1
CiPaw.07G084800 Carya illinoinensis HOM05D004670 ORTHO05D008020 1.8e-132 477.2 625 62.4
QL10p048429 Quercus lobata HOM05D004670 ORTHO05D008020 4.8e-130 469.2 599 64.4
TAR362G1162 Trochodendron aralioides HOM05D004670 ORTHO05D008020 6.3e-130 468.8 578 62.8
Cfa014310 Carpinus fangiana HOM05D004670 ORTHO05D008020 1.2e-128 464.5 588 63.8
Haze_12758 Corylus avellana HOM05D004670 ORTHO05D008020 1.0e-124 451.4 551 64.8
Atru.chr2.211 Acer truncatum HOM05D004670 ORTHO05D008020 7.7e-120 435.3 607 59.5
Haze_20607 Corylus avellana HOM05D004670 ORTHO05D008020 7.7e-120 435.3 552 62.1
Lj8P583T10 Lonicera japonica HOM05D004670 ORTHO05D008020 2.9e-119 433.3 481 70.1
Nitab4.5_0008751g0030 Nicotiana tabacum HOM05D004670 ORTHO05D008020 1.6e-117 427.6 585 58.8
Nn1g09528 Nelumbo nucifera HOM05D004670 ORTHO05D008020 1.8e-116 424.1 379 60.2
MBI07_g36706_MAGBIO Magnolia biondii HOM05D004670 ORTHO05D008020 2.0e-115 420.6 493 66.5
Sopen11g001140 Solanum pennellii HOM05D004670 ORTHO05D008020 2.6e-115 420.2 557 59.4
Solyc11g005140.1 Solanum lycopersicum HOM05D004670 ORTHO05D008020 4.4e-115 419.5 557 59.1
PGSC0003DMG400006026 Solanum tuberosum HOM05D004670 ORTHO05D008020 1.3e-114 417.9 618 56.5
TWI18G1064 Tripterygium wilfordii HOM05D004670 ORTHO05D008020 1.7e-114 417.5 458 65.7
QL10p044086 Quercus lobata HOM05D004670 ORTHO05D008020 8.2e-114 415.2 324 68.5
CAN.G716.1 Capsicum annuum HOM05D004670 ORTHO05D008020 5.9e-112 409.1 479 65.6
Thecc.06G195000 Theobroma cacao HOM05D004670 ORTHO05D008020 1.3e-111 407.9 555 61.8
Gohir.D13G219500 Gossypium hirsutum HOM05D004670 ORTHO05D008020 1.7e-111 407.5 593 59.5
MD00G1017000 Malus domestica HOM05D004670 ORTHO05D008020 3.8e-111 406.4 540 64.3
EL10Ac4g10032 Beta vulgaris HOM05D004670 ORTHO05D008020 6.5e-111 405.6 598 58.0
Prupe.6G365500 Prunus persica HOM05D004670 ORTHO05D008020 3.2e-110 403.3 470 71.7
Ciclev10004046m.g Citrus clementina HOM05D004670 ORTHO05D008020 9.4e-110 401.7 594 59.1
Peaxi162Scf00066g00021 Petunia axillaris HOM05D004670 ORTHO05D008020 2.1e-109 400.6 608 55.8
EL10Ac7g17697 Beta vulgaris HOM05D004670 ORTHO05D008020 6.1e-109 399.1 598 56.0
Sed0002677 Sechium edule HOM05D004670 ORTHO05D008020 3.9e-108 396.4 545 59.3
Aqoxy3G03703 Aquilegia oxysepala HOM05D004670 ORTHO05D008020 6.7e-108 395.6 635 50.4
CANSAT54G2504 Cannabis sativa HOM05D004670 ORTHO05D008020 2.0e-107 394.0 597 57.8
Duzib150G0183 Durio zibethinus HOM05D004670 ORTHO05D008020 2.0e-107 394.0 585 59.5
Lsat_1_v5_gn_7_7580 Lactuca sativa HOM05D004670 ORTHO05D008020 3.3e-107 393.3 601 57.2
Sc16g0010690 Simmondsia chinensis HOM05D004670 ORTHO05D008020 4.4e-107 392.9 604 57.0
Manes.13G000200 Manihot esculenta HOM05D004670 ORTHO05D008020 1.3e-106 391.3 293 66.9
Nitab4.5_0001348g0230 Nicotiana tabacum HOM05D004670 ORTHO05D008020 3.7e-106 389.8 557 57.8
MELO3C008575.2 Cucumis melo HOM05D004670 ORTHO05D008020 1.4e-105 387.9 543 60.0
Potri.001G361500 Populus trichocarpa HOM05D004670 ORTHO05D008020 1.4e-105 387.9 582 59.3
Sabra16G0238400 Salix brachista HOM05D004670 ORTHO05D008020 7.0e-105 385.6 594 58.1
COL.COLO4_09284 Corchorus olitorius HOM05D004670 ORTHO05D008020 9.1e-105 385.2 588 58.0
AUR62008838 Chenopodium quinoa HOM05D004670 ORTHO05D008020 2.0e-104 384.0 546 59.9
Gorai.013G250400 Gossypium raimondii HOM05D004670 ORTHO05D008020 1.0e-103 381.7 593 57.8
AUR62025405 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.3e-103 381.3 578 57.3
Eucgr.B01443 Eucalyptus grandis HOM05D004670 ORTHO05D008020 3.8e-103 379.8 459 66.2
Phvul.008G212400 Phaseolus vulgaris HOM05D004670 ORTHO05D008020 3.8e-103 379.8 465 65.2
Oeu040399.1 Olea europaea HOM05D004670 ORTHO05D008020 8.5e-103 378.6 598 56.4
Eucgr.L01231 Eucalyptus grandis HOM05D004670 ORTHO05D008020 1.9e-102 377.5 459 66.4
Gohir.A13G215800 Gossypium hirsutum HOM05D004670 ORTHO05D008020 9.4e-102 375.2 590 57.3
HanXRQChr16g0532601 Helianthus annuus HOM05D004670 ORTHO05D008020 3.6e-101 373.2 606 55.3
Glyma.15G017400 Glycine max HOM05D004670 ORTHO05D008020 2.3e-100 370.5 460 65.7
Ah.06g195210 Amaranthus hybridus HOM05D004670 ORTHO05D008020 6.7e-100 369.0 585 54.9
DCAR_024376 Daucus carota HOM05D004670 ORTHO05D008020 5.7e-99 365.9 593 57.2
Glyma.13G356700 Glycine max HOM05D004670 ORTHO05D008020 5.7e-99 365.9 458 66.4
HanXRQChr02g0056371 Helianthus annuus HOM05D004670 ORTHO05D008020 2.2e-98 364.0 572 56.6
VMungo0647G0492 Vigna mungo HOM05D004670 ORTHO05D008020 3.7e-98 363.2 561 57.4
Ca_16311_v3 Cicer arietinum L. HOM05D004670 ORTHO05D008020 1.4e-97 361.3 605 50.2
ECA236G4653 Erigeron canadensis HOM05D004670 ORTHO05D008020 3.1e-97 360.1 495 62.8
Migut.C01066 Erythranthe guttata HOM05D004670 ORTHO05D008020 2.0e-96 357.5 610 53.3
PGR119G2020 Punica granatum HOM05D004670 ORTHO05D008020 8.5e-95 352.1 465 63.9
CsaV3_2G010440 Cucumis sativus L. HOM05D004670 ORTHO05D008020 5.5e-94 349.4 601 53.1
MSTRG.25359 Avicennia marina HOM05D004670 ORTHO05D008020 1.2e-93 348.2 617 51.7
ECA246G0724 Erigeron canadensis HOM05D004670 ORTHO05D008020 8.0e-93 345.5 533 59.3
SGA_v2.0_scaffold52G18920 Striga asiatica HOM05D004670 ORTHO05D008020 8.0e-93 345.5 622 38.9
ATR0743G160 Amborella trichopoda HOM05D004670 ORTHO05D008020 4.0e-92 343.2 534 57.3
Cc10_g12810 Coffea canephora HOM05D004670 ORTHO05D008020 3.4e-91 340.1 621 52.5
SalBow7G4343 Salvia bowleyana HOM05D004670 ORTHO05D008020 1.3e-90 338.2 425 44.7
THA.LOC104827168 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 2.2e-90 337.4 592 54.7
SalBow7G3652 Salvia bowleyana HOM05D004670 ORTHO05D008020 6.3e-90 335.9 425 44.5
Thhalv10020352m.g Eutrema salsugineum HOM05D004670 ORTHO05D008020 2.4e-89 334.0 597 51.1
PSO017G2252 Papaver somniferum HOM05D004670 ORTHO05D008020 3.1e-89 333.6 429 46.2
AUR62044648 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.6e-88 331.3 413 47.2
Psat5g107920 Pisum sativum HOM05D004670 ORTHO05D008020 3.5e-88 330.1 434 47.7
RcHm_v2.0_Chr2g0131651 Rosa chinensis HOM05D004670 ORTHO05D008020 1.3e-87 328.2 428 46.7
SHI13694 Sapria himalayana HOM05D004670 ORTHO05D008020 1.1e-86 325.1 296 54.7
CDE06G0776 Ceratophyllum demersum HOM05D004670 ORTHO05D008020 5.5e-86 322.8 374 48.9
arahy.Tifrunner.gnm1.ann1.H9JUXY Arachis hypogaea HOM05D004670 ORTHO05D008020 1.0e-84 318.5 452 60.4
FAN14G3835 Fragaria x ananassa HOM05D004670 ORTHO05D008020 1.4e-84 318.2 425 45.6
PSO675G7837 Papaver somniferum HOM05D004670 ORTHO05D008020 3.0e-84 317.0 426 44.8
FvH4_6g27990 Fragaria vesca HOM05D004670 ORTHO05D008020 8.9e-84 315.5 425 45.2
TPR.G23340 Trifolium pratense HOM05D004670 ORTHO05D008020 2.0e-83 314.3 442 44.6
THA.LOC104802429 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 2.6e-83 313.9 605 52.6
Medtr3g081310 Medicago truncatula HOM05D004670 ORTHO05D008020 3.1e-81 307.0 435 43.0
Carub.0003s0177 Capsella rubella HOM05D004670 ORTHO05D008020 8.6e-79 298.9 434 42.4
CSS0025547 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 1.2e-77 295.0 285 61.8
BolC1t05888H Brassica oleracea HOM05D004670 ORTHO05D008020 1.6e-77 294.7 524 54.2
AT3G02650 Arabidopsis thaliana HOM05D004670 ORTHO05D008020 2.3e-76 290.8 376 47.1
Sp3g01690 Schrenkiella parvula HOM05D004670 ORTHO05D008020 2.3e-76 290.8 441 41.7
BNapus_Darmor_BZH_scaffold_99p00180 Brassica napus HOM05D004670 ORTHO05D008020 3.1e-76 290.4 424 41.7
Lj2g0025819 Lotus japonicus HOM05D004670 ORTHO05D008020 8.9e-76 288.9 441 42.2
AL3G12030 Arabidopsis lyrata HOM05D004670 ORTHO05D008020 1.5e-75 288.1 431 43.2
HPP92_012838 Vanilla planifolia HOM05D004670 ORTHO05D008020 2.6e-75 287.3 547 51.6
Cpa.g.sc127.45 Carica papaya HOM05D004670 ORTHO05D008020 1.3e-74 285.0 487 57.9
TPR.G9216 Trifolium pratense HOM05D004670 ORTHO05D008020 4.9e-74 283.1 325 49.8
BNapus_Darmor_BZH_scaffold_122p00150 Brassica napus HOM05D004670 ORTHO05D008020 6.4e-74 282.7 373 44.0
CARHR076670 Cardamine hirsuta HOM05D004670 ORTHO05D008020 9.2e-73 278.9 378 44.4
A03p33060 Brassica napus HOM05D004670 ORTHO05D008020 3.9e-71 273.5 376 44.1
BraSC246t45824Z Brassica rapa HOM05D004670 ORTHO05D008020 5.0e-71 273.1 375 43.7
BraA03t12476Z Brassica rapa HOM05D004670 ORTHO05D008020 1.1e-70 271.9 376 44.1
C03p40240 Brassica napus HOM05D004670 ORTHO05D008020 3.3e-70 270.4 376 44.7
Lalb_Chr13g0290441 Lupinus albus HOM05D004670 ORTHO05D008020 8.0e-69 265.8 495 47.5
BcaC01g04430 Brassica carinata HOM05D004670 ORTHO05D008020 4.0e-68 263.5 365 43.8
BolC3t16289H Brassica oleracea HOM05D004670 ORTHO05D008020 4.0e-68 263.5 365 43.8
Dinv17144 Davidia involucrata HOM05D004670 ORTHO05D008020 7.5e-67 259.2 255 54.1
BcaB04g19393 Brassica carinata HOM05D004670 ORTHO05D008020 2.1e-64 251.1 371 42.3
AUR62000265 Chenopodium quinoa HOM05D004670 ORTHO05D008020 7.3e-62 242.7 457 37.2
Lj6g0018960 Lotus japonicus HOM05D004670 ORTHO05D008020 3.6e-61 240.4 592 48.5
PGR119G2157 Punica granatum HOM05D004670 ORTHO05D008020 2.6e-51 207.6 428 33.9
Zm00001eb144640 Zea mays HOM05D004670 ORTHO05D008020 5.8e-51 206.5 473 48.4
Thecc.09G224400 Theobroma cacao HOM05D004670 ORTHO05D008020 3.8e-50 203.8 448 47.3
Cpa.g.sc35.62 Carica papaya HOM05D004670 ORTHO05D022223 6.6e-39 166.4 195 49.7
SEGI_06910 Sequoiadendron giganteum HOM05D004670 ORTHO05D008020 3.1e-36 157.5 290 30.3
AUR62006613 Chenopodium quinoa HOM05D004670 ORTHO05D008020 4.6e-32 143.7 206 41.3
Medtr5g092030 Medicago truncatula HOM05D004670 ORTHO05D014137 1.4e-28 132.1 310 31.6
TPR.G25089 Trifolium pratense HOM05D004670 ORTHO05D014137 1.5e-27 128.6 269 33.5
Medtr8g105355 Medicago truncatula HOM05D004670 ORTHO05D014137 7.6e-27 126.3 266 33.5
Medtr8g105450 Medicago truncatula HOM05D004670 ORTHO05D014137 7.6e-27 126.3 266 33.5
Medtr5g088900 Medicago truncatula HOM05D004670 ORTHO05D014137 1.0e-26 125.9 264 34.1
TPR.G17089 Trifolium pratense HOM05D004670 ORTHO05D014137 1.1e-25 122.5 266 35.0
TPR.G5228 Trifolium pratense HOM05D002798 ORTHO05D003052 1.4e-25 122.1 265 35.8
AUR62008837 Chenopodium quinoa HOM05D004670 ORTHO05D008020 3.0e-23 114.4 346 27.7
Cpa.g.c31883 Carica papaya HOM05D004670 ORTHO05D022223 5.8e-19 100.1 110 49.1
TPR.G10813 Trifolium pratense HOM05D004670 ORTHO05D008020 3.5e-16 90.9 71 57.7
Cpa.g.sc15.139 Carica papaya HOM05D004670 ORTHO05D022223 1.4e-12 79.0 161 35.4
TPR.G5188 Trifolium pratense HOM05D004670 ORTHO05D008020 1.4e-12 79.0 204 32.8
Cpa.g.sc209.39 Carica papaya HOM05D004670 ORTHO05D022223 9.0e-12 76.3 68 52.9
AUR62044649 Chenopodium quinoa HOM05D004670 ORTHO05D008020 2.6e-11 74.7 63 57.1
VMungo1080G1842 Vigna mungo HOM05D004670 ORTHO05D014137 4.5e-11 73.9 70 51.4
Medtr1g102600 Medicago truncatula HOM05D004670 ORTHO05D266903 5.9e-11 73.6 133 34.6
Ca_09603_v3 Cicer arietinum L. HOM05D004670 ORTHO05D014137 2.9e-10 71.2 144 35.4
Os01g0897500 Oryza sativa ssp. japonica HOM05D004670 ORTHO05D008020 9.4e-09 66.2 62 53.2
Oeu022416.1 Olea europaea HOM05D004670 ORTHO05D008020 1.0e-07 62.8 50 60.0
Hma1.2p1_0060F.1_g032840 Hydrangea macrophylla HOM05D006218 ORTHO05D007338 3.0e-07 61.2 159 25.8
Medtr5g095780 Medicago truncatula HOM05D004670 ORTHO05D008020 8.8e-07 59.7 66 42.4
A03p08810 Brassica napus HOM05D007661 ORTHO05D009671 1.5e-06 58.9 157 28.0
VMungo1215G2433 Vigna mungo HOM05D004670 ORTHO05D014137 1.5e-06 58.9 70 47.1
Aa31LG11G11280 Aethionema arabicum HOM05D007661 ORTHO05D009671 2.0e-06 58.5 159 25.8
C03p10300 Brassica napus HOM05D007661 ORTHO05D009671 2.0e-06 58.5 157 28.0
BraA03t10206Z Brassica rapa HOM05D007661 ORTHO05D009671 2.0e-06 58.5 157 28.0
Sp6g25930 Schrenkiella parvula HOM05D007661 ORTHO05D009671 2.0e-06 58.5 156 25.0
Cpa.g.sc93.21 Carica papaya HOM05D004670 ORTHO05D022223 2.5e-06 58.2 91 39.6
MD13G1027000 Malus domestica HOM05D000424 ORTHO05D000355 2.5e-06 58.2 142 26.8
CARHR194640 Cardamine hirsuta HOM05D007661 ORTHO05D009671 3.3e-06 57.8 165 23.0
AL6G29620 Arabidopsis lyrata HOM05D007661 ORTHO05D009671 5.7e-06 57.0 165 23.0
AT5G18390 Arabidopsis thaliana HOM05D007661 ORTHO05D009671 5.7e-06 57.0 165 23.0
Carub.0006s1665 Capsella rubella HOM05D007661 ORTHO05D009671 5.7e-06 57.0 165 23.0
Thhalv10013477m.g Eutrema salsugineum HOM05D007661 ORTHO05D009671 5.7e-06 57.0 156 25.0
Medtr1g055295 Medicago truncatula HOM05D006596 ORTHO05D008497 5.7e-06 57.0 325 22.8
BcaB01g05190 Brassica carinata HOM05D007661 ORTHO05D009671 9.7e-06 56.2 157 27.4


User provided reference genes

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