Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027479 Camellia sinensis var. sinensis HOM05D003715 ORTHO05D003958 2.4e-86 322.4 198 100.0
vmacro12564 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 5.0e-31 138.7 295 35.9
Hma1.2p1_0152F.1_g067600 Hydrangea macrophylla HOM05D003715 ORTHO05D003958 2.5e-30 136.3 305 33.8
Dinv14575 Davidia involucrata HOM05D003715 ORTHO05D003958 4.2e-30 135.6 291 35.4
Manes.09G140500 Manihot esculenta HOM05D003715 ORTHO05D003958 3.6e-29 132.5 96 67.7
Actinidia22080 Actinidia chinensis HOM05D003715 ORTHO05D003958 1.0e-28 131.0 311 33.4
Dinv37021 Davidia involucrata HOM05D003715 ORTHO05D003958 1.8e-28 130.2 294 37.8
PGSC0003DMG400008354 Solanum tuberosum HOM05D003715 ORTHO05D003958 1.5e-27 127.1 251 37.1
Manes.08G145000 Manihot esculenta HOM05D003715 ORTHO05D003958 2.6e-27 126.3 93 63.4
Sabra19G0044200 Salix brachista HOM05D003715 ORTHO05D003958 4.4e-27 125.6 178 45.5
Sabra19G0047500 Salix brachista HOM05D003715 ORTHO05D003958 4.4e-27 125.6 178 45.5
CANSAT78G1806 Cannabis sativa HOM05D003715 ORTHO05D003958 1.3e-26 124.0 92 64.1
Oeu024502.1 Olea europaea HOM05D003715 ORTHO05D003958 1.3e-26 124.0 283 32.9
Potri.019G035600 Populus trichocarpa HOM05D003715 ORTHO05D003958 1.7e-26 123.6 166 45.8
Sopen10g029220 Solanum pennellii HOM05D003715 ORTHO05D003958 2.2e-26 123.2 252 36.9
arahy.Tifrunner.gnm1.ann1.V3MY1S Arachis hypogaea HOM05D003715 ORTHO05D003958 3.7e-26 122.5 241 38.2
Solyc10g078590.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 3.7e-26 122.5 252 36.9
Gohir.A11G235300 Gossypium hirsutum HOM05D003715 ORTHO05D003958 6.3e-26 121.7 96 65.6
QL07p018445 Quercus lobata HOM05D003715 ORTHO05D003958 6.3e-26 121.7 165 47.3
Cfa001533 Carpinus fangiana HOM05D003715 ORTHO05D003958 8.2e-26 121.3 164 45.7
MSTRG.26069 Avicennia marina HOM05D003715 ORTHO05D003958 1.1e-25 120.9 277 33.2
Thecc.05G249800 Theobroma cacao HOM05D003715 ORTHO05D003958 1.4e-25 120.6 164 47.6
Oeu035703.1 Olea europaea HOM05D003715 ORTHO05D003958 2.4e-25 119.8 296 32.8
Potri.013G057200 Populus trichocarpa HOM05D003715 ORTHO05D003958 3.1e-25 119.4 165 45.5
COL.COLO4_36085 Corchorus olitorius HOM05D003715 ORTHO05D003958 5.3e-25 118.6 164 45.7
Duzib106G1922 Durio zibethinus HOM05D003715 ORTHO05D003958 7.0e-25 118.2 167 47.3
Gorai.007G262000 Gossypium raimondii HOM05D003715 ORTHO05D003958 9.1e-25 117.9 97 64.9
VMungo0464G1653 Vigna mungo HOM05D003715 ORTHO05D003958 9.1e-25 117.9 163 47.2
Glyma.16G153700 Glycine max HOM05D003715 ORTHO05D003958 1.2e-24 117.5 96 61.5
Ca_08274_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 1.6e-24 117.1 94 60.6
Glyma.02G072500 Glycine max HOM05D003715 ORTHO05D003958 1.6e-24 117.1 96 61.5
Actinidia30549 Actinidia chinensis HOM05D003715 ORTHO05D003958 3.5e-24 115.9 99 61.6
Aqoxy2G00514 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 3.5e-24 115.9 98 60.2
Lj1g0002462 Lotus japonicus HOM05D003715 ORTHO05D003958 3.5e-24 115.9 92 58.7
TWI32G0411 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 3.5e-24 115.9 168 44.6
Medtr6g029250 Medicago truncatula HOM05D003715 ORTHO05D003958 4.5e-24 115.5 93 60.2
Ca_04486_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 5.9e-24 115.2 96 60.4
Atru.chr2.1400 Acer truncatum HOM05D003715 ORTHO05D003958 1.0e-23 114.4 91 62.6
DCAR_019875 Daucus carota HOM05D003715 ORTHO05D003958 1.3e-23 114.0 162 44.4
TWI34G1349 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 1.3e-23 114.0 95 64.2
Lj1g0012553 Lotus japonicus HOM05D003715 ORTHO05D003958 1.7e-23 113.6 92 57.6
Ciclev10021362m.g Citrus clementina HOM05D003715 ORTHO05D003958 2.9e-23 112.8 96 59.4
MBI04_g28023_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 2.9e-23 112.8 93 58.1
MBI04_g47731_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 2.9e-23 112.8 93 58.1
Phvul.004G080700 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 2.9e-23 112.8 93 58.1
Nitab4.5_0002769g0040 Nicotiana tabacum HOM05D003715 ORTHO05D003958 3.8e-23 112.5 265 34.3
Psat1g091040 Pisum sativum HOM05D003715 ORTHO05D003958 3.8e-23 112.5 93 60.2
Haze_19430 Corylus avellana HOM05D003715 ORTHO05D003958 5.0e-23 112.1 101 61.4
Peaxi162Scf00463g00019 Petunia axillaris HOM05D003715 ORTHO05D003958 6.5e-23 111.7 296 31.1
TPR.G5870 Trifolium pratense HOM05D003715 ORTHO05D003958 6.5e-23 111.7 94 58.5
TPR.G9142 Trifolium pratense HOM05D003715 ORTHO05D003958 6.5e-23 111.7 93 57.0
Eucgr.A02102 Eucalyptus grandis HOM05D003715 ORTHO05D003958 8.5e-23 111.3 96 57.3
RcHm_v2.0_Chr3g0497011 Rosa chinensis HOM05D003715 ORTHO05D003958 8.5e-23 111.3 95 65.3
Glyma.16G040300 Glycine max HOM05D003715 ORTHO05D003958 1.5e-22 110.5 97 63.9
PGR042G0616 Punica granatum HOM05D003715 ORTHO05D003958 1.5e-22 110.5 93 61.3
Glyma.19G112800 Glycine max HOM05D003715 ORTHO05D003958 1.9e-22 110.2 97 62.9
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 2.5e-22 109.8 92 58.7
Medtr7g085790 Medicago truncatula HOM05D003715 ORTHO05D003958 3.2e-22 109.4 94 60.6
Phvul.001G111500 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 3.2e-22 109.4 97 58.8
PGR142G1981 Punica granatum HOM05D003715 ORTHO05D003958 3.2e-22 109.4 97 61.9
Psat3g088760 Pisum sativum HOM05D003715 ORTHO05D003958 5.5e-22 108.6 94 55.3
VMungo1383G2890 Vigna mungo HOM05D003715 ORTHO05D003958 9.4e-22 107.8 93 58.1
Gohir.D11G246200 Gossypium hirsutum HOM05D003715 ORTHO05D003958 1.2e-21 107.5 97 61.9
Nitab4.5_0000658g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.6e-21 107.1 314 30.3
CiPaw.10G001300 Carya illinoinensis HOM05D003715 ORTHO05D003958 4.7e-21 105.5 201 37.3
Peaxi162Scf00003g04827 Petunia axillaris HOM05D003715 ORTHO05D003958 4.7e-21 105.5 255 32.9
Sabra13G0051000 Salix brachista HOM05D003715 ORTHO05D003958 4.7e-21 105.5 166 41.0
Lalb_Chr02g0157161 Lupinus albus HOM05D003715 ORTHO05D003958 6.1e-21 105.1 96 54.2
MD14G1003600 Malus domestica HOM05D003715 ORTHO05D003958 8.0e-21 104.8 92 56.5
Prupe.7G006100 Prunus persica HOM05D003715 ORTHO05D003958 8.0e-21 104.8 91 56.0
Sc13g0002630 Simmondsia chinensis HOM05D003715 ORTHO05D003958 1.4e-20 104.0 94 52.1
PSO384G3755 Papaver somniferum HOM05D003715 ORTHO05D003958 3.0e-20 102.8 97 52.6
MD12G1005100 Malus domestica HOM05D003715 ORTHO05D003958 4.0e-20 102.4 92 55.4
PSO339G5928 Papaver somniferum HOM05D003715 ORTHO05D003958 6.8e-20 101.7 97 52.6
THA.LOC104820776 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 6.8e-20 101.7 97 54.6
PSO781G0019 Papaver somniferum HOM05D003715 ORTHO05D003958 8.8e-20 101.3 97 53.6
Hund19231 Selenicereus undatus HOM05D003715 ORTHO05D003958 8.8e-20 101.3 93 52.7
Nitab4.5_0000358g0150 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.5e-19 100.5 94 61.7
MBI01_g25640_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 2.0e-19 100.1 97 52.6
Lalb_Chr22g0359081 Lupinus albus HOM05D003715 ORTHO05D003958 7.5e-19 98.2 97 57.7
Cpa.g.sc51.130 Carica papaya HOM05D003715 ORTHO05D003958 1.3e-18 97.4 98 59.2
MBI04_g37012_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.3e-18 97.4 92 52.2
Lalb_Chr14g0364551 Lupinus albus HOM05D003715 ORTHO05D003958 2.8e-18 96.3 94 55.3
Cc06_g23060 Coffea canephora HOM05D003715 ORTHO05D003958 3.7e-18 95.9 101 54.5
SGA_v2.0_scaffold94G28404 Striga asiatica HOM05D003715 ORTHO05D003958 3.7e-18 95.9 258 32.6
ECA238G2879 Erigeron canadensis HOM05D003715 ORTHO05D003958 4.8e-18 95.5 93 58.1
EL10Ac3g06828 Beta vulgaris HOM05D003715 ORTHO05D003958 6.3e-18 95.1 271 26.2
FvH4_1g28230 Fragaria vesca HOM05D003715 ORTHO05D003958 6.3e-18 95.1 95 53.7
FAN23G0877 Fragaria x ananassa HOM05D003715 ORTHO05D003958 6.3e-18 95.1 95 53.7
FAN26G1768 Fragaria x ananassa HOM05D003715 ORTHO05D003958 6.3e-18 95.1 95 53.7
arahy.Tifrunner.gnm1.ann1.KTU7AY Arachis hypogaea HOM05D003715 ORTHO05D003958 8.3e-18 94.7 95 54.7
Thhalv10014292m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 8.3e-18 94.7 101 58.4
HanXRQChr14g0438161 Helianthus annuus HOM05D003715 ORTHO05D003958 8.3e-18 94.7 92 57.6
ClCG04G005350 Citrullus lanatus HOM05D003715 ORTHO05D003958 1.1e-17 94.4 96 56.2
CsaV3_4G013240 Cucumis sativus L. HOM05D003715 ORTHO05D003958 1.1e-17 94.4 96 56.2
FAN28G3019 Fragaria x ananassa HOM05D003715 ORTHO05D003958 1.4e-17 94.0 95 53.7
Eucgr.K01502 Eucalyptus grandis HOM05D003715 ORTHO05D003958 1.8e-17 93.6 95 56.8
Nitab4.5_0001079g0120 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.8e-17 93.6 217 34.6
MELO3C008806.2 Cucumis melo HOM05D003715 ORTHO05D003958 2.4e-17 93.2 92 56.5
Sp6g26180 Schrenkiella parvula HOM05D003715 ORTHO05D003958 4.1e-17 92.4 101 57.4
Sed0021221 Sechium edule HOM05D003715 ORTHO05D003958 4.1e-17 92.4 96 54.2
CARHR077990 Cardamine hirsuta HOM05D003715 ORTHO05D003958 5.4e-17 92.0 99 56.6
CARHR194940 Cardamine hirsuta HOM05D003715 ORTHO05D003958 5.4e-17 92.0 100 55.0
Sp3g02840 Schrenkiella parvula HOM05D003715 ORTHO05D003958 5.4e-17 92.0 99 56.6
BcaNung05741 Brassica carinata HOM05D003715 ORTHO05D003958 7.0e-17 91.7 98 56.1
Carub.0003s0306 Capsella rubella HOM05D003715 ORTHO05D003958 7.0e-17 91.7 101 55.4
A03p08670 Brassica napus HOM05D003715 ORTHO05D003958 9.1e-17 91.3 98 54.1
Actinidia38611 Actinidia chinensis HOM05D003715 ORTHO05D003958 1.2e-16 90.9 74 60.8
Carub.0006s1642 Capsella rubella HOM05D003715 ORTHO05D003958 1.6e-16 90.5 97 54.6
Nn2g12054 Nelumbo nucifera HOM05D003715 ORTHO05D003958 1.6e-16 90.5 97 51.5
SalBow1G3164 Salvia bowleyana HOM05D003715 ORTHO05D003958 1.6e-16 90.5 216 32.9
AL6G29330 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 2.0e-16 90.1 97 52.6
Nitab4.5_0000394g0140 Nicotiana tabacum HOM05D003715 ORTHO05D003958 2.0e-16 90.1 300 30.3
AT5G18130 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 2.7e-16 89.7 96 54.2
Thhalv10021350m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 2.7e-16 89.7 99 54.5
Aa31LG11G11470 Aethionema arabicum HOM05D003715 ORTHO05D003958 3.5e-16 89.4 99 51.5
Aqoxy1G00472 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 3.5e-16 89.4 91 51.6
AL3G13760 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 3.5e-16 89.4 99 54.5
AT3G03870 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 3.5e-16 89.4 99 54.5
ECA233G0839 Erigeron canadensis HOM05D003715 ORTHO05D003958 4.5e-16 89.0 91 53.8
BcaC05g29901 Brassica carinata HOM05D003715 ORTHO05D003958 7.7e-16 88.2 99 52.5
BolC5t34973H Brassica oleracea HOM05D003715 ORTHO05D003958 7.7e-16 88.2 99 52.5
A10p21370 Brassica napus HOM05D003715 ORTHO05D003958 1.0e-15 87.8 100 54.0
C09p58840 Brassica napus HOM05D003715 ORTHO05D003958 1.0e-15 87.8 100 54.0
BolC9t58728H Brassica oleracea HOM05D003715 ORTHO05D003958 1.0e-15 87.8 100 54.0
BraA10t44200Z Brassica rapa HOM05D003715 ORTHO05D003958 1.0e-15 87.8 100 54.0
BcaB01g05177 Brassica carinata HOM05D003715 ORTHO05D003958 1.7e-15 87.0 100 51.0
C03p10110 Brassica napus HOM05D003715 ORTHO05D003958 1.7e-15 87.0 100 51.0
BolC3t13497H Brassica oleracea HOM05D003715 ORTHO05D003958 1.7e-15 87.0 100 51.0
BraA03t10190Z Brassica rapa HOM05D003715 ORTHO05D003958 1.7e-15 87.0 100 51.0
vmacro09135 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 1.7e-15 87.0 226 30.1
BcaC05g30247 Brassica carinata HOM05D003715 ORTHO05D003958 2.2e-15 86.7 99 51.5
Sed0002226 Sechium edule HOM05D003715 ORTHO05D003958 2.2e-15 86.7 92 51.1
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 2.9e-15 86.3 91 46.2
HanXRQChr13g0397871 Helianthus annuus HOM05D003715 ORTHO05D003958 2.9e-15 86.3 93 52.7
Zm00001eb302900 Zea mays HOM05D003715 ORTHO05D003958 3.8e-15 85.9 90 48.9
A02p04750 Brassica napus HOM05D003715 ORTHO05D003958 5.0e-15 85.5 97 50.5
BolC1t05801H Brassica oleracea HOM05D003715 ORTHO05D003958 5.0e-15 85.5 95 51.6
BolC2t06880H Brassica oleracea HOM05D003715 ORTHO05D003958 5.0e-15 85.5 97 50.5
A05p43520 Brassica napus HOM05D003715 ORTHO05D003958 6.5e-15 85.1 99 51.5
Lsat_1_v5_gn_6_37461 Lactuca sativa HOM05D003715 ORTHO05D003958 6.5e-15 85.1 91 48.4
TAR633G2492 Trochodendron aralioides HOM05D003715 ORTHO05D003958 6.5e-15 85.1 97 48.5
C02p09710 Brassica napus HOM05D003715 ORTHO05D003958 1.1e-14 84.3 97 49.5
Os03g0806600 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 1.5e-14 84.0 95 48.4
ATR0737G080 Amborella trichopoda HOM05D003715 ORTHO05D003958 1.9e-14 83.6 96 44.8
BcaB08g36703 Brassica carinata HOM05D003715 ORTHO05D003958 1.9e-14 83.6 100 52.0
BcaB01g06399 Brassica carinata HOM05D003715 ORTHO05D003958 2.5e-14 83.2 97 49.5
BraA02t05434Z Brassica rapa HOM05D003715 ORTHO05D003958 2.5e-14 83.2 97 49.5
BraA05t23092Z Brassica rapa HOM05D003715 ORTHO05D003958 2.5e-14 83.2 95 50.5
Rhsim04G0091400 Rhododendron simsii HOM05D006013 ORTHO05D007383 2.5e-14 83.2 245 30.2
BcaB05g23302 Brassica carinata HOM05D003715 ORTHO05D003958 3.2e-14 82.8 98 51.0
Nitab4.5_0009367g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 4.2e-14 82.4 237 30.4
Duzib128G0041 Durio zibethinus HOM05D003715 ORTHO05D003958 5.5e-14 82.0 96 53.1
HanXRQChr02g0054571 Helianthus annuus HOM05D003715 ORTHO05D003958 5.5e-14 82.0 263 28.9
CiPaw.09G002400 Carya illinoinensis HOM05D003715 ORTHO05D003958 2.7e-13 79.7 156 36.5
BcaC03g13579 Brassica carinata HOM05D003715 ORTHO05D003958 3.6e-13 79.3 97 46.4
BcaC05g30288 Brassica carinata HOM05D003715 ORTHO05D003958 6.1e-13 78.6 92 52.2
Solyc10g080670.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 8.8e-12 74.7 236 30.5
Os07g0204100 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 1.2e-11 74.3 90 50.0
arahy.Tifrunner.gnm1.ann1.FCYU2S Arachis hypogaea HOM05D003715 ORTHO05D003958 2.0e-11 73.6 91 46.2
Sopen10g031210 Solanum pennellii HOM05D003715 ORTHO05D003958 7.5e-11 71.6 236 29.2
HPP92_014229 Vanilla planifolia HOM05D035551 ORTHO05D003958 1.3e-10 70.9 210 26.7
PGSC0003DMG400023700 Solanum tuberosum HOM05D003715 ORTHO05D003958 1.4e-09 67.4 235 28.5
Aa31LG5G14450 Aethionema arabicum HOM05D003715 ORTHO05D003958 3.1e-09 66.2 94 43.6
TAR369G0375 Trochodendron aralioides HOM05D003715 ORTHO05D003958 3.1e-09 66.2 54 55.6
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 5.4e-09 65.5 65 52.3
FAN19G0160 Fragaria x ananassa HOM05D003715 ORTHO05D003958 2.7e-08 63.2 62 51.6
Nn7g35866 Nelumbo nucifera HOM05D003715 ORTHO05D003958 2.7e-08 63.2 54 57.4
CDE02G4343 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 3.5e-08 62.8 95 40.0
Lsat_1_v5_gn_2_58261 Lactuca sativa HOM05D003715 ORTHO05D003958 1.0e-07 61.2 51 58.8
SEGI_20586 Sequoiadendron giganteum HOM05D003715 ORTHO05D003958 1.7e-07 60.5 97 38.1
Zm00001eb160930 Zea mays HOM05D015210 ORTHO05D003958 2.3e-07 60.1 65 52.3
Ah.04g153150 Amaranthus hybridus HOM05D003715 ORTHO05D003958 3.8e-07 59.3 92 38.0
THA.LOC104827275 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 5.0e-07 58.9 73 46.6
Zm00001eb160900 Zea mays HOM05D015210 ORTHO05D003958 5.0e-07 58.9 75 46.7
Zm00001eb160940 Zea mays HOM05D015210 ORTHO05D003958 5.0e-07 58.9 75 46.7
arahy.Tifrunner.gnm1.ann1.85Z4HY Arachis hypogaea HOM05D003715 ORTHO05D003958 8.6e-07 58.2 245 29.4
THA.LOC104802870 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 8.6e-07 58.2 94 40.4
Zm00001eb160920 Zea mays HOM05D015210 ORTHO05D003958 8.6e-07 58.2 65 50.8
Zm00001eb160960 Zea mays HOM05D015210 ORTHO05D003958 8.6e-07 58.2 65 50.8
Zm00001eb160980 Zea mays HOM05D015210 ORTHO05D003958 8.6e-07 58.2 76 46.1
PSO384G3057 Papaver somniferum HOM05D003715 ORTHO05D003958 1.9e-06 57.0 55 41.8
Zm00001eb160970 Zea mays HOM05D015210 ORTHO05D003958 2.5e-06 56.6 75 45.3
PSO782G0808 Papaver somniferum HOM05D003715 ORTHO05D003958 3.3e-06 56.2 119 31.9
Zm00001eb160910 Zea mays HOM05D015210 ORTHO05D003958 3.3e-06 56.2 66 50.0


User provided reference genes

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