Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027478 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 2.4e-36 154.8 71 100.0
CSS0028236 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 2.4e-36 154.8 71 100.0
CSS0019302 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 3.3e-33 144.4 71 93.0
CSS0047987 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 3.6e-32 141.0 71 93.0
CSS0004694 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 6.1e-32 140.2 71 88.7
CSS0043972 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 3.6e-24 114.4 71 78.9
CSS0026176 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.3e-21 105.9 53 88.7
CSS0045711 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.3e-21 105.9 53 88.7
AUR62002836 Chenopodium quinoa HOM05D006037 ORTHO05D007384 3.0e-18 94.7 53 81.1
Potri.010G122000 Populus trichocarpa HOM05D006037 ORTHO05D007384 5.1e-18 94.0 61 72.1
Nn3g17908 Nelumbo nucifera HOM05D006037 ORTHO05D007384 8.6e-18 93.2 53 73.6
vmacro10580 Vaccinium macrocarpon HOM05D006037 ORTHO05D007384 8.6e-18 93.2 52 80.8
Manes.14G105200 Manihot esculenta HOM05D006037 ORTHO05D007384 1.1e-17 92.8 53 73.6
Sabra10G0092100 Salix brachista HOM05D006037 ORTHO05D007384 1.1e-17 92.8 53 77.4
PSO478G0980 Papaver somniferum HOM05D006037 ORTHO05D007384 1.9e-17 92.0 53 75.5
DCAR_007255 Daucus carota HOM05D006037 ORTHO05D007384 2.5e-17 91.7 53 79.2
PSO017G5347 Papaver somniferum HOM05D006037 ORTHO05D007384 2.5e-17 91.7 53 75.5
Rhsim09G0105100 Rhododendron simsii HOM05D006037 ORTHO05D007384 3.3e-17 91.3 53 75.5
TAR622G1007 Trochodendron aralioides HOM05D006037 ORTHO05D007384 4.3e-17 90.9 53 75.5
TAR622G1402 Trochodendron aralioides HOM05D006037 ORTHO05D007384 4.3e-17 90.9 53 75.5
Glyma.20G118000 Glycine max HOM05D006037 ORTHO05D007384 9.5e-17 89.7 53 77.4
Lj3C1012T17 Lonicera japonica HOM05D006037 ORTHO05D007384 9.5e-17 89.7 53 75.5
CiPaw.05G240100 Carya illinoinensis HOM05D006037 ORTHO05D007384 1.2e-16 89.4 51 80.4
MBI09_g07743_MAGBIO Magnolia biondii HOM05D006037 ORTHO05D007384 1.2e-16 89.4 53 73.6
Potri.010G122100 Populus trichocarpa HOM05D006037 ORTHO05D007384 2.1e-16 88.6 51 76.5
Sabra10G0092200 Salix brachista HOM05D006037 ORTHO05D007384 2.1e-16 88.6 51 76.5
SGA_v2.0_scaffold38G14964 Striga asiatica HOM05D006037 ORTHO05D000229 2.1e-16 88.6 58 69.0
Psat6g225720 Pisum sativum HOM05D006037 ORTHO05D007384 2.8e-16 88.2 53 73.6
AUR62037301 Chenopodium quinoa HOM05D006037 ORTHO05D007384 3.6e-16 87.8 57 71.9
EL10Ac6g14338 Beta vulgaris HOM05D006037 ORTHO05D007384 4.7e-16 87.4 53 71.7
Haze_00627 Corylus avellana HOM05D006037 ORTHO05D007384 4.7e-16 87.4 51 78.4
Atru.chr11.165 Acer truncatum HOM05D006037 ORTHO05D007384 6.2e-16 87.0 53 71.7
Aqoxy3G00235 Aquilegia oxysepala HOM05D006037 ORTHO05D007384 6.2e-16 87.0 53 73.6
CANSAT01G2894 Cannabis sativa HOM05D006037 ORTHO05D007384 6.2e-16 87.0 53 67.9
Eucgr.B02995 Eucalyptus grandis HOM05D006037 ORTHO05D007384 6.2e-16 87.0 53 73.6
Medtr1g110300 Medicago truncatula HOM05D006037 ORTHO05D007384 6.2e-16 87.0 53 73.6
TWI31G0909 Tripterygium wilfordii HOM05D006037 ORTHO05D007384 6.2e-16 87.0 53 73.6
GSVIVG01011862001 Vitis vinifera HOM05D006037 ORTHO05D007384 6.2e-16 87.0 61 68.9
CDE12G0065 Ceratophyllum demersum HOM05D006037 ORTHO05D007384 8.1e-16 86.7 53 69.8
Lj5g0002773 Lotus japonicus HOM05D006037 ORTHO05D007384 8.1e-16 86.7 53 75.5
TPR.G4859 Trifolium pratense HOM05D006037 ORTHO05D007384 8.1e-16 86.7 53 71.7
Ciclev10014910m.g Citrus clementina HOM05D006037 ORTHO05D007384 1.8e-15 85.5 61 63.9
Migut.L01043 Erythranthe guttata HOM05D006037 ORTHO05D007384 2.3e-15 85.1 61 63.9
Ca_11141_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 3.1e-15 84.7 51 74.5
Ca_11146_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 3.1e-15 84.7 51 74.5
Nitab4.5_0005528g0030 Nicotiana tabacum HOM05D006037 ORTHO05D007384 4.0e-15 84.3 53 75.5
PGR102G0142 Punica granatum HOM05D006037 ORTHO05D007384 4.0e-15 84.3 53 69.8
THA.LOC104821921 Tarenaya hassleriana HOM05D006037 ORTHO05D007384 4.0e-15 84.3 53 71.7
Lalb_Chr06g0165941 Lupinus albus HOM05D006037 ORTHO05D007384 6.8e-15 83.6 53 73.6
Solyc05g009140.3 Solanum lycopersicum HOM05D006037 ORTHO05D007384 6.8e-15 83.6 53 71.7
Sopen05g004860 Solanum pennellii HOM05D006037 ORTHO05D007384 6.8e-15 83.6 53 71.7
PGSC0003DMG401014554 Solanum tuberosum HOM05D006037 ORTHO05D007384 6.8e-15 83.6 53 71.7
VMungo0720G2449 Vigna mungo HOM05D006037 ORTHO05D007384 6.8e-15 83.6 53 69.8
AUR62002838 Chenopodium quinoa HOM05D006037 ORTHO05D007384 1.2e-14 82.8 53 67.9
ECA246G3707 Erigeron canadensis HOM05D006037 ORTHO05D007384 1.2e-14 82.8 53 67.9
MD13G1039000 Malus domestica HOM05D006037 ORTHO05D007384 1.2e-14 82.8 53 67.9
Nitab4.5_0001616g0090 Nicotiana tabacum HOM05D006037 ORTHO05D007384 1.2e-14 82.8 53 71.7
arahy.Tifrunner.gnm1.ann1.CBB0MY Arachis hypogaea HOM05D006037 ORTHO05D007384 1.5e-14 82.4 53 69.8
arahy.Tifrunner.gnm1.ann1.NA36PT Arachis hypogaea HOM05D006037 ORTHO05D007384 1.5e-14 82.4 53 69.8
FvH4_4g26975 Fragaria vesca HOM05D006037 ORTHO05D007384 1.5e-14 82.4 53 67.9
FAN12G3404 Fragaria x ananassa HOM05D006037 ORTHO05D007384 1.5e-14 82.4 53 67.9
Os01g0133500 Oryza sativa ssp. japonica HOM05D006037 ORTHO05D007384 1.5e-14 82.4 52 65.4
CAN.G610.57 Capsicum annuum HOM05D006037 ORTHO05D007384 2.0e-14 82.0 53 71.7
Cc11_g09830 Coffea canephora HOM05D006037 ORTHO05D007384 2.0e-14 82.0 53 71.7
MD16G1039700 Malus domestica HOM05D006037 ORTHO05D007384 2.6e-14 81.6 53 66.0
Peaxi162Scf00753g00122 Petunia axillaris HOM05D006037 ORTHO05D007384 2.6e-14 81.6 51 74.5
RcHm_v2.0_Chr4g0434781 Rosa chinensis HOM05D006037 ORTHO05D007384 2.6e-14 81.6 53 67.9
MSTRG.7652 Avicennia marina HOM05D006037 ORTHO05D007384 3.4e-14 81.3 53 71.7
AUR62037303 Chenopodium quinoa HOM05D006037 ORTHO05D007384 3.4e-14 81.3 53 67.9
Thhalv10007371m.g Eutrema salsugineum HOM05D006037 ORTHO05D007384 4.4e-14 80.9 53 69.8
FAN22G1751 Fragaria x ananassa HOM05D006037 ORTHO05D007384 4.4e-14 80.9 53 66.0
Prupe.1G314400 Prunus persica HOM05D006037 ORTHO05D007384 4.4e-14 80.9 53 66.0
Lsat_1_v5_gn_3_57741 Lactuca sativa HOM05D006037 ORTHO05D007384 5.8e-14 80.5 53 66.0
SalBow8G2496 Salvia bowleyana HOM05D006037 ORTHO05D007384 5.8e-14 80.5 51 74.5
SalBow8G4457 Salvia bowleyana HOM05D006037 ORTHO05D007384 5.8e-14 80.5 51 74.5
unitig_747.g21203 Utricularia gibba HOM05D006037 ORTHO05D007384 5.8e-14 80.5 61 63.9
Carub.0001s2514 Capsella rubella HOM05D006037 ORTHO05D007384 1.7e-13 79.0 51 68.6
Phvul.007G029700 Phaseolus vulgaris HOM05D006037 ORTHO05D007384 1.7e-13 79.0 53 66.0
Aa31LG7G9130 Aethionema arabicum HOM05D006037 ORTHO05D007384 2.9e-13 78.2 51 68.6
AL1G39950 Arabidopsis lyrata HOM05D006037 ORTHO05D007384 2.9e-13 78.2 53 64.2
HanXRQChr17g0551931 Helianthus annuus HOM05D006037 ORTHO05D007384 2.9e-13 78.2 53 67.9
Sc11g0003550 Simmondsia chinensis HOM05D006037 ORTHO05D007384 2.9e-13 78.2 51 66.7
Aa31LG7G9120 Aethionema arabicum HOM05D006037 ORTHO05D007384 3.7e-13 77.8 51 70.6
A09p39240 Brassica napus HOM05D006037 ORTHO05D007384 4.9e-13 77.4 53 67.9
BraA09t39423Z Brassica rapa HOM05D006037 ORTHO05D007384 4.9e-13 77.4 53 67.9
Zm00001eb125200 Zea mays HOM05D006037 ORTHO05D007384 4.9e-13 77.4 51 62.7
ATR1125G090 Amborella trichopoda HOM05D006037 ORTHO05D007384 6.4e-13 77.0 51 66.7
AT1G25375 Arabidopsis thaliana HOM05D006037 ORTHO05D007384 6.4e-13 77.0 51 66.7
Duzib248G1272 Durio zibethinus HOM05D006037 ORTHO05D007384 8.3e-13 76.6 51 68.6
C05p25140 Brassica napus HOM05D006037 ORTHO05D007384 1.1e-12 76.3 53 67.9
BcaC05g26674 Brassica carinata HOM05D006037 ORTHO05D007384 1.4e-12 75.9 53 67.9
Thecc.02G224800 Theobroma cacao HOM05D006037 ORTHO05D007384 1.4e-12 75.9 51 68.6
COL.COLO4_38215 Corchorus olitorius HOM05D006037 ORTHO05D007384 4.1e-12 74.3 51 66.7
Gohir.A03G147800 Gossypium hirsutum HOM05D006037 ORTHO05D007384 4.1e-12 74.3 51 68.6
Gohir.D02G171000 Gossypium hirsutum HOM05D006037 ORTHO05D007384 4.1e-12 74.3 51 68.6
Gorai.005G192200 Gossypium raimondii HOM05D006037 ORTHO05D007384 4.1e-12 74.3 51 68.6
BolC5t31246H Brassica oleracea HOM05D006037 ORTHO05D007384 7.1e-12 73.6 53 66.0
CARHR026110 Cardamine hirsuta HOM05D006037 ORTHO05D007384 1.6e-11 72.4 51 64.7
HPP92_008271 Vanilla planifolia HOM05D006037 ORTHO05D007384 6.0e-11 70.5 51 62.7
BcaC05g26470 Brassica carinata HOM05D006037 ORTHO05D007384 2.8e-08 61.6 52 59.6
SMO164G0020 Selaginella moellendorffii HOM05D006037 ORTHO05D007384 1.8e-07 58.9 51 45.1
AagrBONN_evm.TU.Sc2ySwM_117.146 Anthoceros agrestis HOM05D006037 ORTHO05D007384 1.2e-06 56.2 44 54.5
Pp3c15_25940 Physcomitrium patens HOM05D006037 ORTHO05D007384 1.5e-06 55.8 44 54.5
QL01p040421 Quercus lobata HOM05D006037 ORTHO05D007384 5.8e-06 53.9 133 30.1


User provided reference genes

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