Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027472 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 4.8e-38 160.6 78 100.0
CSS0012709 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 5.2e-24 114.0 55 100.0
Actinidia36313 Actinidia chinensis HOM05D003845 ORTHO05D004161 7.5e-23 110.2 55 94.5
Dinv33933 Davidia involucrata HOM05D003845 ORTHO05D004161 7.0e-21 103.6 55 90.9
Hma1.2p1_0136F.1_g062170 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 7.0e-21 103.6 55 89.1
Hma1.2p1_0136F.1_g062180 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 9.1e-21 103.2 55 87.3
Lj2C445G6 Lonicera japonica HOM05D003845 ORTHO05D004161 3.5e-20 101.3 55 87.3
TWI53G0876 Tripterygium wilfordii HOM05D003845 ORTHO05D004161 7.7e-20 100.1 54 81.5
Dinv34837 Davidia involucrata HOM05D003845 ORTHO05D004161 1.0e-19 99.8 55 85.5
GSVIVG01031064001 Vitis vinifera HOM05D003845 ORTHO05D004161 2.3e-19 98.6 54 87.0
EL10Ac2g04592 Beta vulgaris HOM05D003845 ORTHO05D004161 2.9e-19 98.2 54 83.3
Oeu052985.1 Olea europaea HOM05D003845 ORTHO05D004161 3.8e-19 97.8 54 79.6
CANSAT64G2814 Cannabis sativa HOM05D003845 ORTHO05D004161 5.0e-19 97.4 54 81.5
Atru.chr8.887 Acer truncatum HOM05D003845 ORTHO05D004161 1.1e-18 96.3 54 83.3
QL02p051715 Quercus lobata HOM05D003845 ORTHO05D004161 1.1e-18 96.3 54 83.3
CiPaw.04G040900 Carya illinoinensis HOM05D003845 ORTHO05D004161 1.5e-18 95.9 54 83.3
TAR629G0674 Trochodendron aralioides HOM05D003845 ORTHO05D004161 1.5e-18 95.9 54 79.6
Psat3g206280 Pisum sativum HOM05D003845 ORTHO05D004161 1.9e-18 95.5 55 81.8
SGA_v2.0_scaffold33G13453 Striga asiatica HOM05D003845 ORTHO05D004161 1.9e-18 95.5 54 83.3
Lj1g0009000 Lotus japonicus HOM05D003845 ORTHO05D004161 2.5e-18 95.1 55 81.8
Ah.10g037590 Amaranthus hybridus HOM05D003845 ORTHO05D004161 3.3e-18 94.7 55 78.2
Eucgr.F02484 Eucalyptus grandis HOM05D003845 ORTHO05D004161 4.2e-18 94.4 54 77.8
Ca_04077_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 5.5e-18 94.0 52 84.6
Sc23g0006880 Simmondsia chinensis HOM05D003845 ORTHO05D004161 5.5e-18 94.0 54 81.5
Migut.H00208 Erythranthe guttata HOM05D003845 ORTHO05D004161 7.2e-18 93.6 53 81.1
MELO3C022095.2 Cucumis melo HOM05D003845 ORTHO05D004161 1.6e-17 92.4 53 75.5
CsaV3_5G039200 Cucumis sativus L. HOM05D003845 ORTHO05D004161 1.6e-17 92.4 53 75.5
MD12G1002400 Malus domestica HOM05D003845 ORTHO05D004161 1.6e-17 92.4 54 75.9
MD14G1001900 Malus domestica HOM05D003845 ORTHO05D004161 1.6e-17 92.4 54 75.9
ClCG11G005440 Citrullus lanatus HOM05D003845 ORTHO05D004161 2.1e-17 92.0 53 75.5
Prupe.7G002300 Prunus persica HOM05D003845 ORTHO05D004161 2.8e-17 91.7 51 80.4
AUR62014525 Chenopodium quinoa HOM05D003845 ORTHO05D004161 3.6e-17 91.3 54 77.8
AUR62008978 Chenopodium quinoa HOM05D003845 ORTHO05D004161 4.7e-17 90.9 54 77.8
Lalb_Chr21g0317871 Lupinus albus HOM05D003845 ORTHO05D004161 4.7e-17 90.9 55 80.0
VMungo1383G2489 Vigna mungo HOM05D003845 ORTHO05D004161 6.1e-17 90.5 55 76.4
Sed0012635 Sechium edule HOM05D003845 ORTHO05D004161 8.0e-17 90.1 53 71.7
ECA232G1957 Erigeron canadensis HOM05D003845 ORTHO05D004161 1.0e-16 89.7 54 77.8
SalBow3G0178 Salvia bowleyana HOM05D003845 ORTHO05D004161 1.4e-16 89.4 54 77.8
unitig_899.g14511 Utricularia gibba HOM05D003845 ORTHO05D004161 1.4e-16 89.4 57 71.9
HanXRQChr14g0438731 Helianthus annuus HOM05D003845 ORTHO05D004161 2.3e-16 88.6 54 77.8
Gohir.A07G071701 Gossypium hirsutum HOM05D003845 ORTHO05D004161 3.0e-16 88.2 54 79.6
Gohir.D07G076100 Gossypium hirsutum HOM05D003845 ORTHO05D004161 3.0e-16 88.2 54 79.6
Gorai.001G080300 Gossypium raimondii HOM05D003845 ORTHO05D004161 3.0e-16 88.2 54 79.6
FvH4_6g45230 Fragaria vesca HOM05D003845 ORTHO05D004161 4.0e-16 87.8 54 77.8
FAN02G2813 Fragaria x ananassa HOM05D003845 ORTHO05D004161 4.0e-16 87.8 54 77.8
FAN14G4373 Fragaria x ananassa HOM05D003845 ORTHO05D004161 4.0e-16 87.8 54 77.8
Glyma.18G297900 Glycine max HOM05D003845 ORTHO05D004161 4.0e-16 87.8 55 76.4
AL2G25520 Arabidopsis lyrata HOM05D003845 ORTHO05D004161 5.2e-16 87.4 53 77.4
Carub.0002s1343 Capsella rubella HOM05D003845 ORTHO05D004161 5.2e-16 87.4 53 77.4
Lsat_1_v5_gn_4_153700 Lactuca sativa HOM05D003845 ORTHO05D004161 5.2e-16 87.4 53 79.2
Nitab4.5_0002288g0020 Nicotiana tabacum HOM05D003845 ORTHO05D004161 5.2e-16 87.4 54 74.1
Peaxi162Scf00814g00242 Petunia axillaris HOM05D003845 ORTHO05D004161 5.2e-16 87.4 54 74.1
PGR004G1392 Punica granatum HOM05D003845 ORTHO05D004161 5.2e-16 87.4 54 75.9
Solyc02g085810.3 Solanum lycopersicum HOM05D003845 ORTHO05D004161 5.2e-16 87.4 54 74.1
Sopen02g030490 Solanum pennellii HOM05D003845 ORTHO05D004161 5.2e-16 87.4 54 74.1
Thecc.04G136100 Theobroma cacao HOM05D003845 ORTHO05D004161 5.2e-16 87.4 54 75.9
Aa31LG2G3530 Aethionema arabicum HOM05D003845 ORTHO05D004161 6.8e-16 87.0 53 75.5
PSO063G7466 Papaver somniferum HOM05D003845 ORTHO05D004161 6.8e-16 87.0 54 72.2
CAN.G625.4 Capsicum annuum HOM05D003845 ORTHO05D004161 1.2e-15 86.3 54 72.2
Medtr7g406950 Medicago truncatula HOM05D003845 ORTHO05D004161 1.2e-15 86.3 55 74.5
Potri.004G101250 Populus trichocarpa HOM05D003845 ORTHO05D004161 1.2e-15 86.3 54 74.1
Nitab4.5_0001569g0050 Nicotiana tabacum HOM05D003845 ORTHO05D004161 1.5e-15 85.9 54 72.2
Phvul.008G004700 Phaseolus vulgaris HOM05D003845 ORTHO05D004161 1.5e-15 85.9 55 76.4
RcHm_v2.0_Chr2g0162941 Rosa chinensis HOM05D003845 ORTHO05D004161 1.5e-15 85.9 54 75.9
AT1G67140 Arabidopsis thaliana HOM05D003845 ORTHO05D004161 2.6e-15 85.1 53 75.5
Cc07_g08900 Coffea canephora HOM05D003845 ORTHO05D004161 2.6e-15 85.1 55 76.4
Duzib133G1200 Durio zibethinus HOM05D003845 ORTHO05D004161 2.6e-15 85.1 54 74.1
Manes.02G067500 Manihot esculenta HOM05D003845 ORTHO05D004161 3.4e-15 84.7 54 75.9
Sp5g22090 Schrenkiella parvula HOM05D003845 ORTHO05D004161 3.4e-15 84.7 53 75.5
arahy.Tifrunner.gnm1.ann1.4V7WUF Arachis hypogaea HOM05D003845 ORTHO05D004161 5.7e-15 84.0 54 72.2
arahy.Tifrunner.gnm1.ann1.UJVA95 Arachis hypogaea HOM05D003845 ORTHO05D004161 5.7e-15 84.0 54 72.2
Thhalv10017993m.g Eutrema salsugineum HOM05D003845 ORTHO05D004161 5.7e-15 84.0 53 75.5
Aqoxy3G03940 Aquilegia oxysepala HOM05D003845 ORTHO05D004161 1.7e-14 82.4 54 70.4
A07p33800 Brassica napus HOM05D003845 ORTHO05D004161 2.2e-14 82.0 53 73.6
C06p43130 Brassica napus HOM05D003845 ORTHO05D004161 2.2e-14 82.0 53 73.6
BolC6t39126H Brassica oleracea HOM05D003845 ORTHO05D004161 2.2e-14 82.0 53 73.6
BraA07t31006Z Brassica rapa HOM05D003845 ORTHO05D004161 2.2e-14 82.0 53 73.6
Nn4g23790 Nelumbo nucifera HOM05D003845 ORTHO05D004161 2.9e-14 81.6 54 68.5
HPP92_003934 Vanilla planifolia HOM05D003845 ORTHO05D004161 1.4e-13 79.3 54 70.4
ATR0564G046 Amborella trichopoda HOM05D003845 ORTHO05D004161 1.8e-13 79.0 54 68.5
Zm00001eb382690 Zea mays HOM05D003845 ORTHO05D004161 1.2e-12 76.3 55 63.6
CDE02G0049 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 2.0e-12 75.5 54 57.4
SEGI_31548 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 1.2e-09 66.2 53 62.3
SHI17842 Sapria himalayana HOM05D003845 ORTHO05D004161 2.8e-09 65.1 56 55.4
Mapoly0101s0033 Marchantia polymorpha HOM05D003845 ORTHO05D004161 1.4e-08 62.8 54 53.7
AagrBONN_evm.TU.Sc2ySwM_368.2329__2330 Anthoceros agrestis HOM05D003845 ORTHO05D004161 4.0e-08 61.2 55 52.7
CARHR059600 Cardamine hirsuta HOM05D003845 ORTHO05D004161 5.2e-08 60.8 36 72.2
Pp3c15_3000 Physcomitrium patens HOM05D003845 ORTHO05D004161 8.9e-08 60.1 54 53.7
THA.LOC104805559 Tarenaya hassleriana HOM05D003845 ORTHO05D004161 2.6e-07 58.5 54 53.7
SMO239G0031 Selaginella moellendorffii HOM05D003845 ORTHO05D004161 6.4e-06 53.9 51 51.0


User provided reference genes

Program Settings