Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 2.5e-147 525.4 265 100.0
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 1.5e-115 419.9 264 78.4
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 7.4e-115 417.5 265 79.2
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 2.8e-114 415.6 265 79.6
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 6.3e-114 414.5 264 79.5
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 4.1e-113 411.8 268 77.6
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.6e-112 409.8 267 77.2
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 1.6e-112 409.8 263 76.8
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 2.0e-112 409.5 267 77.5
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 1.3e-111 406.8 268 79.1
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 3.8e-111 405.2 268 76.9
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 5.0e-111 404.8 266 77.4
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 5.5e-110 401.4 265 76.2
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 9.4e-110 400.6 266 77.1
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 2.1e-109 399.4 259 77.6
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 2.1e-109 399.4 267 76.8
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 2.7e-109 399.1 267 76.0
Oeu054338.1 Olea europaea HOM05D006032 ORTHO05D007544 6.7e-108 394.4 264 76.1
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 8.8e-108 394.0 262 74.4
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 1.2e-107 393.7 268 75.4
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 1.5e-107 393.3 264 75.8
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 1.5e-107 393.3 267 74.2
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 1.3e-106 390.2 265 73.6
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 2.2e-106 389.4 269 71.7
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 3.7e-106 388.7 261 72.8
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 6.3e-106 387.9 265 73.6
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 8.3e-106 387.5 268 72.8
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 1.4e-105 386.7 260 73.8
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 1.8e-105 386.3 266 74.8
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 4.1e-105 385.2 264 73.9
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 5.3e-105 384.8 267 73.8
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 2.0e-104 382.9 264 72.7
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 7.7e-104 380.9 272 74.3
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 7.7e-104 380.9 263 71.5
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 1.7e-103 379.8 268 72.0
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 3.8e-103 378.6 274 72.6
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 3.8e-103 378.6 277 72.6
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 5.0e-103 378.3 274 72.6
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 8.5e-103 377.5 264 70.8
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 1.9e-102 376.3 271 73.4
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 2.5e-102 375.9 270 71.1
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 2.5e-102 375.9 260 73.8
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 2.5e-102 375.9 270 71.5
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 9.4e-102 374.0 263 69.2
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 4.7e-101 371.7 271 67.2
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 6.1e-101 371.3 273 67.8
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 4.0e-100 368.6 268 70.1
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 5.2e-100 368.2 268 70.1
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 5.2e-100 368.2 263 71.9
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 6.8e-100 367.9 268 70.1
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 6.8e-100 367.9 270 68.9
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 1.5e-99 366.7 266 72.2
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 2.6e-99 365.9 270 68.1
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 3.4e-99 365.5 268 68.3
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 7.5e-99 364.4 259 71.0
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 1.3e-98 363.6 264 72.3
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 1.3e-98 363.6 259 70.3
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 3.7e-98 362.1 269 69.9
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 1.1e-97 360.5 267 68.5
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 1.1e-97 360.5 265 69.4
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 1.1e-97 360.5 267 68.5
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 1.1e-97 360.5 268 68.3
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 1.1e-97 360.5 264 70.5
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 1.1e-97 360.5 270 69.6
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 1.4e-97 360.1 270 70.4
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 1.4e-97 360.1 270 69.3
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 2.4e-97 359.4 270 69.3
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 2.4e-97 359.4 266 68.0
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 4.1e-97 358.6 261 69.7
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 1.2e-96 357.1 266 68.0
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 3.5e-96 355.5 263 69.2
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 3.5e-96 355.5 266 69.9
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 7.7e-96 354.4 263 68.1
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 7.7e-96 354.4 262 71.4
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 1.0e-95 354.0 263 68.1
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 1.0e-95 354.0 263 68.1
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.0e-95 354.0 258 71.3
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.0e-95 354.0 258 71.3
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 1.3e-95 353.6 263 68.1
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 1.3e-95 353.6 263 68.8
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 1.3e-95 353.6 258 71.3
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 2.3e-95 352.8 258 70.9
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 3.8e-95 352.1 260 70.0
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 8.6e-95 350.9 265 67.9
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.9e-94 349.7 258 70.2
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.9e-94 349.7 258 70.2
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 3.0e-92 342.4 252 67.9
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 8.9e-92 340.9 266 65.8
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 3.4e-91 339.0 253 67.6
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 1.3e-90 337.0 309 59.5
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 1.3e-90 337.0 248 68.1
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 1.3e-90 337.0 248 68.1
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 6.3e-90 334.7 250 68.8
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 1.8e-89 333.2 241 69.7
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 1.8e-89 333.2 250 68.4
vmacro20901 Vaccinium macrocarpon HOM05D006032 ORTHO05D007544 7.0e-89 331.3 269 65.8
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 2.1e-85 319.7 263 64.3
Potri.014G089100 Populus trichocarpa HOM05D006032 ORTHO05D007544 2.1e-85 319.7 261 63.6
HPP92_025634 Vanilla planifolia HOM05D006032 ORTHO05D007544 1.4e-84 317.0 241 66.0
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 3.1e-84 315.8 211 71.6
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 5.2e-84 315.1 232 68.1
Peaxi162Scf00815g00338 Petunia axillaris HOM05D006032 ORTHO05D007544 3.4e-83 312.4 183 84.2
Os03g0125000 Oryza sativa ssp. japonica HOM05D006032 ORTHO05D007544 1.9e-81 306.6 217 68.7
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 5.4e-81 305.1 235 67.7
Zm00001eb001840 Zea mays HOM05D006032 ORTHO05D007544 7.8e-80 301.2 220 65.9
MBI04_g41504_MAGBIO Magnolia biondii HOM05D006032 ORTHO05D007544 4.3e-70 268.9 261 57.1
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.3e-68 263.1 193 68.9
Mapoly0001s0334 Marchantia polymorpha HOM05D006032 ORTHO05D007544 1.5e-67 260.4 219 59.8
A03p31970 Brassica napus HOM05D006032 ORTHO05D007544 3.4e-67 259.2 195 67.7
BraA03t12369Z Brassica rapa HOM05D006032 ORTHO05D007544 3.4e-67 259.2 195 67.7
Solyc09g007560.4 Solanum lycopersicum HOM05D006032 ORTHO05D007544 7.1e-65 251.5 175 76.0
AagrBONN_evm.TU.Sc2ySwM_228.1445 Anthoceros agrestis HOM05D006032 ORTHO05D007544 3.5e-64 249.2 191 60.2
Pp3c2_17110 Physcomitrium patens HOM05D006032 ORTHO05D007544 3.0e-63 246.1 222 54.1
Pp3c1_25850 Physcomitrium patens HOM05D006032 ORTHO05D007544 1.9e-62 243.4 249 51.0
SMO358G0099 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 3.6e-61 239.2 180 62.2
MSTRG.17292 Avicennia marina HOM05D006032 ORTHO05D007544 5.6e-54 215.3 133 79.7
SEGI_08351 Sequoiadendron giganteum HOM05D006032 ORTHO05D007544 9.0e-52 208.0 141 69.5
Rhsim01G0165400 Rhododendron simsii HOM05D006032 ORTHO05D007544 1.5e-51 207.2 160 68.8
COL.COLO4_27391 Corchorus olitorius HOM05D006032 ORTHO05D007544 1.7e-42 177.2 107 79.4
Haze_27649 Corylus avellana HOM05D006032 ORTHO05D007544 1.7e-42 177.2 153 54.2
C02p38190 Brassica napus HOM05D006032 ORTHO05D007544 1.1e-41 174.5 264 42.4
BolC2t09834H Brassica oleracea HOM05D006032 ORTHO05D007544 1.1e-41 174.5 264 42.4
BcaC03g16053 Brassica carinata HOM05D006032 ORTHO05D007544 1.9e-41 173.7 264 42.4
Cfa021143 Carpinus fangiana HOM05D006032 ORTHO05D001488 7.9e-40 168.3 155 50.3
Sabra14G0064700 Salix brachista HOM05D006032 ORTHO05D007544 3.4e-35 152.9 115 67.0
Actinidia02824 Actinidia chinensis HOM05D006032 ORTHO05D007544 4.2e-33 146.0 89 85.4
Nitab4.5_0000681g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 3.8e-26 122.9 76 80.3
SMO196G0051 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 2.5e-25 120.2 179 35.8
Nitab4.5_0000681g0060 Nicotiana tabacum HOM05D006032 ORTHO05D007544 3.0e-23 113.2 69 76.8
Rhsim12G0138600 Rhododendron simsii HOM05D006032 ORTHO05D007544 5.7e-22 109.0 88 65.9
VMungo1309G2152 Vigna mungo HOM05D006032 ORTHO05D007544 3.4e-19 99.8 81 64.2
Cfa024600 Carpinus fangiana HOM05D006032 ORTHO05D122942 1.1e-14 84.7 169 29.6
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 1.1e-14 84.7 66 65.2
Psat2g092280 Pisum sativum HOM05D006032 ORTHO05D007544 5.9e-11 72.4 60 58.3
Dinv43855 Davidia involucrata HOM05D006032 ORTHO05D007544 1.9e-09 67.4 39 84.6
unitig_8.g3788 Utricularia gibba HOM05D006032 ORTHO05D007544 3.2e-09 66.6 102 41.2
FvH4_5g19211 Fragaria vesca HOM05D006032 ORTHO05D197553 8.8e-07 58.5 42 73.8
PRCOL_00006126 Prasinoderma coloniale HOM05D001556 ORTHO05D001505 2.6e-06 57.0 147 29.3
Sc24g0002240 Simmondsia chinensis HOM05D006032 ORTHO05D007544 3.3e-06 56.6 55 47.3


User provided reference genes

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