Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027395 Camellia sinensis var. sinensis HOM05D000607 ORTHO05D000518 2.2e-31 138.7 88 100.0
CSS0020590 Camellia sinensis var. sinensis HOM05D000607 ORTHO05D000518 2.0e-11 72.4 83 59.0
Glyma.10G235700 Glycine max HOM05D000607 ORTHO05D000518 7.4e-11 70.5 83 56.6
Medtr1g100587 Medicago truncatula HOM05D000607 ORTHO05D000518 7.4e-11 70.5 83 56.6
arahy.Tifrunner.gnm1.ann1.U9GE21 Arachis hypogaea HOM05D000607 ORTHO05D000518 1.7e-10 69.3 83 55.4
Hund04743 Selenicereus undatus HOM05D000607 ORTHO05D000518 2.8e-10 68.6 83 54.2
TPR.G14333 Trifolium pratense HOM05D000071 ORTHO05D000029 2.8e-10 68.6 58 70.7
arahy.Tifrunner.gnm1.ann1.QHK7TD Arachis hypogaea HOM05D000607 ORTHO05D000518 3.7e-10 68.2 83 54.2
Eucgr.A02786 Eucalyptus grandis HOM05D000607 ORTHO05D000518 3.7e-10 68.2 83 53.0
CiPaw.04G071200 Carya illinoinensis HOM05D000607 ORTHO05D000518 4.8e-10 67.8 83 53.0
PGR042G2454 Punica granatum HOM05D000607 ORTHO05D000518 4.8e-10 67.8 83 54.2
Hma1.2p1_0270F.1_g108010 Hydrangea macrophylla HOM05D000607 ORTHO05D000518 6.3e-10 67.4 83 54.2
arahy.Tifrunner.gnm1.ann1.N1W8DH Arachis hypogaea HOM05D000607 ORTHO05D000518 8.2e-10 67.0 83 53.0
CSS0007996 Camellia sinensis var. sinensis HOM05D000607 ORTHO05D000518 8.2e-10 67.0 83 54.2
CSS0011803 Camellia sinensis var. sinensis HOM05D000607 ORTHO05D000518 8.2e-10 67.0 83 54.2
Dinv38957 Davidia involucrata HOM05D000607 ORTHO05D000518 8.2e-10 67.0 83 50.6
Sc19g0001500 Simmondsia chinensis HOM05D000607 ORTHO05D000518 8.2e-10 67.0 83 51.8
Phvul.007G070001 Phaseolus vulgaris HOM05D000607 ORTHO05D000518 1.1e-09 66.6 83 54.2
TWI39G1228 Tripterygium wilfordii HOM05D000607 ORTHO05D000518 1.1e-09 66.6 77 55.8
Aa31LG11G3130 Aethionema arabicum HOM05D000607 ORTHO05D000518 1.4e-09 66.2 83 53.0
Lj5g0019793 Lotus japonicus HOM05D000607 ORTHO05D000518 1.4e-09 66.2 83 54.2
Psat6g198560 Pisum sativum HOM05D000607 ORTHO05D000518 1.4e-09 66.2 58 67.2
PGR031G3795 Punica granatum HOM05D000607 ORTHO05D000518 1.4e-09 66.2 83 51.8
THA.LOC104798928 Tarenaya hassleriana HOM05D000607 ORTHO05D000518 1.4e-09 66.2 83 50.6
Actinidia34115 Actinidia chinensis HOM05D000607 ORTHO05D000518 1.8e-09 65.9 83 51.8
arahy.Tifrunner.gnm1.ann1.S3TF80 Arachis hypogaea HOM05D000607 ORTHO05D000518 1.8e-09 65.9 86 51.2
ECA232G0205 Erigeron canadensis HOM05D000607 ORTHO05D000518 1.8e-09 65.9 58 69.0
Migut.F00338 Erythranthe guttata HOM05D000607 ORTHO05D000518 1.8e-09 65.9 83 53.0
Lalb_Chr21g0305041 Lupinus albus HOM05D000607 ORTHO05D000518 1.8e-09 65.9 83 53.0
Oeu056258.1 Olea europaea HOM05D000607 ORTHO05D000518 1.8e-09 65.9 83 53.0
vmacro06679 Vaccinium macrocarpon HOM05D000607 ORTHO05D000518 1.8e-09 65.9 83 53.0
Gohir.A09G041900 Gossypium hirsutum HOM05D000607 ORTHO05D000518 2.4e-09 65.5 83 51.8
Gohir.A12G227100 Gossypium hirsutum HOM05D000607 ORTHO05D000518 2.4e-09 65.5 83 50.6
Gohir.D09G042800 Gossypium hirsutum HOM05D000607 ORTHO05D000518 2.4e-09 65.5 83 51.8
Gohir.D12G229600 Gossypium hirsutum HOM05D000607 ORTHO05D000518 2.4e-09 65.5 83 50.6
Gorai.006G049200 Gossypium raimondii HOM05D000607 ORTHO05D000518 2.4e-09 65.5 83 51.8
Gorai.008G245900 Gossypium raimondii HOM05D000607 ORTHO05D000518 2.4e-09 65.5 83 50.6
Potri.015G144200 Populus trichocarpa HOM05D000607 ORTHO05D000518 2.4e-09 65.5 83 53.0
SalBow4G0149 Salvia bowleyana HOM05D000607 ORTHO05D000518 2.4e-09 65.5 83 51.8
SalBow4G2098 Salvia bowleyana HOM05D000607 ORTHO05D000518 2.4e-09 65.5 83 51.8
Actinidia31820 Actinidia chinensis HOM05D000607 ORTHO05D000518 3.1e-09 65.1 83 50.6
AUR62021189 Chenopodium quinoa HOM05D000262 ORTHO05D009380 3.1e-09 65.1 83 54.2
FvH4_7g29510 Fragaria vesca HOM05D000607 ORTHO05D000518 3.1e-09 65.1 83 51.8
FAN03G1315 Fragaria x ananassa HOM05D000607 ORTHO05D000518 3.1e-09 65.1 83 51.8
FAN03G1886 Fragaria x ananassa HOM05D000607 ORTHO05D000518 3.1e-09 65.1 83 51.8
FAN06G0737 Fragaria x ananassa HOM05D000607 ORTHO05D000518 3.1e-09 65.1 83 51.8
FAN06G1071 Fragaria x ananassa HOM05D000607 ORTHO05D000518 3.1e-09 65.1 83 51.8
Glyma.09G138600 Glycine max HOM05D000607 ORTHO05D000518 3.1e-09 65.1 83 51.8
Manes.06G147500 Manihot esculenta HOM05D000607 ORTHO05D000518 3.1e-09 65.1 83 53.0
SGA_v2.0_scaffold60G21045 Striga asiatica HOM05D000607 ORTHO05D000518 3.1e-09 65.1 83 53.0
Migut.F01118 Erythranthe guttata HOM05D000607 ORTHO05D000518 4.1e-09 64.7 83 49.4
Glyma.16G189302 Glycine max HOM05D000607 ORTHO05D000518 4.1e-09 64.7 83 50.6
HanXRQChr09g0253611 Helianthus annuus HOM05D000607 ORTHO05D000518 4.1e-09 64.7 58 67.2
Lsat_1_v5_gn_9_55940 Lactuca sativa HOM05D000607 ORTHO05D000518 4.1e-09 64.7 58 67.2
Lj2g0016591 Lotus japonicus HOM05D000607 ORTHO05D000518 4.1e-09 64.7 83 50.6
VMungo0464G2180 Vigna mungo HOM05D000607 ORTHO05D000518 4.1e-09 64.7 83 50.6
A06p34650 Brassica napus HOM05D000607 ORTHO05D000518 5.3e-09 64.3 84 52.4
C07p43850 Brassica napus HOM05D000607 ORTHO05D000518 5.3e-09 64.3 84 52.4
BolC7t44913H Brassica oleracea HOM05D000607 ORTHO05D000518 5.3e-09 64.3 84 52.4
BraA06t26392Z Brassica rapa HOM05D000607 ORTHO05D000518 5.3e-09 64.3 84 52.4
Carub.0006s2151 Capsella rubella HOM05D000607 ORTHO05D000518 5.3e-09 64.3 83 53.0
CARHR189770 Cardamine hirsuta HOM05D000607 ORTHO05D000518 5.3e-09 64.3 83 53.0
Cpa.g.sc107.55 Carica papaya HOM05D000607 ORTHO05D000518 5.3e-09 64.3 83 50.6
Ca_10768_v3 Cicer arietinum L. HOM05D000607 ORTHO05D000518 5.3e-09 64.3 83 53.0
ClCG09G012900 Citrullus lanatus HOM05D000607 ORTHO05D000518 5.3e-09 64.3 83 51.8
CsaV3_3G049960 Cucumis sativus L. HOM05D000607 ORTHO05D000518 5.3e-09 64.3 83 51.8
Manes.14G026000 Manihot esculenta HOM05D000607 ORTHO05D000518 5.3e-09 64.3 83 51.8
RcHm_v2.0_Chr1g0377351 Rosa chinensis HOM05D000607 ORTHO05D000518 5.3e-09 64.3 83 51.8
Sp2g23460 Schrenkiella parvula HOM05D000607 ORTHO05D000518 5.3e-09 64.3 83 53.0
VMungo0720G0520 Vigna mungo HOM05D000607 ORTHO05D000518 5.3e-09 64.3 83 53.0
BcaB04g19847 Brassica carinata HOM05D000607 ORTHO05D000518 6.9e-09 63.9 83 51.8
C09p07520 Brassica napus HOM05D000607 ORTHO05D000518 6.9e-09 63.9 84 52.4
BolC9t53667H Brassica oleracea HOM05D000607 ORTHO05D000518 6.9e-09 63.9 84 52.4
Dinv28439 Davidia involucrata HOM05D000607 ORTHO05D000518 6.9e-09 63.9 83 49.4
Duzib205G0442 Durio zibethinus HOM05D000607 ORTHO05D000518 6.9e-09 63.9 83 50.6
FAN10G2857 Fragaria x ananassa HOM05D000607 ORTHO05D000518 6.9e-09 63.9 83 50.6
FAN10G3783 Fragaria x ananassa HOM05D000607 ORTHO05D000518 6.9e-09 63.9 83 50.6
Medtr6g045257 Medicago truncatula HOM05D000607 ORTHO05D000518 6.9e-09 63.9 83 50.6
Phvul.004G116400 Phaseolus vulgaris HOM05D000607 ORTHO05D000518 6.9e-09 63.9 83 49.4
Sabra12G0106400 Salix brachista HOM05D000607 ORTHO05D000518 6.9e-09 63.9 83 51.8
TPR.G10746 Trifolium pratense HOM05D000607 ORTHO05D000518 6.9e-09 63.9 83 50.6
TAR367G0009 Trochodendron aralioides HOM05D000607 ORTHO05D000518 6.9e-09 63.9 83 49.4
CANSAT21G1682 Cannabis sativa HOM05D000607 ORTHO05D000518 9.1e-09 63.5 83 51.8
CiPaw.03G106600 Carya illinoinensis HOM05D000607 ORTHO05D000518 9.1e-09 63.5 83 49.4
QL09p014173 Quercus lobata HOM05D000607 ORTHO05D000518 9.1e-09 63.5 83 49.4
SGA_v2.0_scaffold44G16724 Striga asiatica HOM05D000607 ORTHO05D000518 9.1e-09 63.5 83 50.6
HPP92_022561 Vanilla planifolia HOM05D000607 ORTHO05D000518 9.1e-09 63.5 83 49.4
AL6G35040 Arabidopsis lyrata HOM05D000607 ORTHO05D000518 1.2e-08 63.2 83 51.8
AT5G23760 Arabidopsis thaliana HOM05D000607 ORTHO05D000518 1.2e-08 63.2 83 51.8
MSTRG.8735 Avicennia marina HOM05D000607 ORTHO05D000518 1.2e-08 63.2 83 50.6
A09p06780 Brassica napus HOM05D000607 ORTHO05D000518 1.2e-08 63.2 84 51.2
BraA09t36323Z Brassica rapa HOM05D000607 ORTHO05D000518 1.2e-08 63.2 84 51.2
Gohir.A12G227300 Gossypium hirsutum HOM05D000607 ORTHO05D000518 1.2e-08 63.2 83 49.4
Gohir.D12G229400 Gossypium hirsutum HOM05D000607 ORTHO05D000518 1.2e-08 63.2 83 49.4
Gorai.008G245700 Gossypium raimondii HOM05D000607 ORTHO05D000518 1.2e-08 63.2 83 49.4
Psat7g192960 Pisum sativum HOM05D000607 ORTHO05D000518 1.2e-08 63.2 83 50.6
MSTRG.8457 Avicennia marina HOM05D000607 ORTHO05D000518 1.5e-08 62.8 58 62.1
CSS0049347 Camellia sinensis var. sinensis HOM05D000607 ORTHO05D000518 1.5e-08 62.8 83 47.0
FAN01G2376 Fragaria x ananassa HOM05D000607 ORTHO05D000518 1.5e-08 62.8 83 50.6
TWI14G0448 Tripterygium wilfordii HOM05D000607 ORTHO05D000518 1.5e-08 62.8 83 51.8
Cc08_g14460 Coffea canephora HOM05D000607 ORTHO05D000518 2.0e-08 62.4 83 48.2
Thecc.03G177000 Theobroma cacao HOM05D000607 ORTHO05D000518 2.0e-08 62.4 83 50.6
Prupe.2G294600 Prunus persica HOM05D000607 ORTHO05D000518 2.6e-08 62.0 83 50.6
Atru.chr1.456 Acer truncatum HOM05D000607 ORTHO05D000518 3.4e-08 61.6 83 51.8
Dinv35213 Davidia involucrata HOM05D000262 ORTHO05D009380 3.4e-08 61.6 83 48.2
Duzib084G1049 Durio zibethinus HOM05D000607 ORTHO05D000518 3.4e-08 61.6 64 57.8
Gohir.A12G257600 Gossypium hirsutum HOM05D000607 ORTHO05D000518 3.4e-08 61.6 83 49.4
Gohir.D12G258900 Gossypium hirsutum HOM05D000607 ORTHO05D000518 3.4e-08 61.6 83 49.4
Gorai.008G277300 Gossypium raimondii HOM05D000607 ORTHO05D000518 3.4e-08 61.6 83 49.4
Lalb_Chr03g0034561 Lupinus albus HOM05D000607 ORTHO05D000518 3.4e-08 61.6 83 49.4
MD07G1270100 Malus domestica HOM05D000607 ORTHO05D000518 3.4e-08 61.6 83 49.4
Nitab4.5_0002117g0010 Nicotiana tabacum HOM05D000607 ORTHO05D000518 3.4e-08 61.6 84 53.6
Nitab4.5_0003072g0030 Nicotiana tabacum HOM05D000607 ORTHO05D000518 3.4e-08 61.6 84 53.6
Oeu024221.1 Olea europaea HOM05D000607 ORTHO05D000518 3.4e-08 61.6 83 50.6
PSO478G3266 Papaver somniferum HOM05D000607 ORTHO05D000518 3.4e-08 61.6 58 58.6
PSO782G3265 Papaver somniferum HOM05D000607 ORTHO05D000518 3.4e-08 61.6 58 58.6
Thecc.03G276200 Theobroma cacao HOM05D000607 ORTHO05D000518 3.4e-08 61.6 83 47.0
GSVIVG01028974001 Vitis vinifera HOM05D000607 ORTHO05D000518 3.4e-08 61.6 83 50.6
MSTRG.91 Avicennia marina HOM05D000607 ORTHO05D000518 4.5e-08 61.2 83 48.2
Duzib068G0051 Durio zibethinus HOM05D000607 ORTHO05D000518 4.5e-08 61.2 83 48.2
MD07G1270400 Malus domestica HOM05D000607 ORTHO05D000518 4.5e-08 61.2 83 49.4
Potri.012G141500 Populus trichocarpa HOM05D000607 ORTHO05D000518 4.5e-08 61.2 83 50.6
CAN.G490.33 Capsicum annuum HOM05D000607 ORTHO05D000518 5.9e-08 60.8 84 52.4
DCAR_010312 Daucus carota HOM05D000607 ORTHO05D000518 5.9e-08 60.8 83 49.4
Sopen03g004610 Solanum pennellii HOM05D000607 ORTHO05D000518 5.9e-08 60.8 84 52.4
PGSC0003DMG400014342 Solanum tuberosum HOM05D000607 ORTHO05D000518 5.9e-08 60.8 84 52.4
THA.LOC104818169 Tarenaya hassleriana HOM05D000607 ORTHO05D000518 5.9e-08 60.8 83 49.4
TAR374G1069 Trochodendron aralioides HOM05D000607 ORTHO05D000518 5.9e-08 60.8 83 47.0
Lalb_Chr01g0009321 Lupinus albus HOM05D000607 ORTHO05D000518 7.7e-08 60.5 83 49.4
Nitab4.5_0001842g0020 Nicotiana tabacum HOM05D000607 ORTHO05D000518 7.7e-08 60.5 84 52.4
Aqoxy7G00358 Aquilegia oxysepala HOM05D000607 ORTHO05D000518 1.0e-07 60.1 83 47.0
DCAR_014513 Daucus carota HOM05D000607 ORTHO05D000518 1.0e-07 60.1 58 60.3
MD01G1201200 Malus domestica HOM05D000607 ORTHO05D000518 1.0e-07 60.1 83 48.2
Sed0010299 Sechium edule HOM05D000607 ORTHO05D000518 1.0e-07 60.1 83 48.2
MBI18_g37164_MAGBIO Magnolia biondii HOM05D000607 ORTHO05D000518 1.3e-07 59.7 83 47.0
Os10g0506100 Oryza sativa ssp. japonica HOM05D000607 ORTHO05D000518 1.3e-07 59.7 83 45.8
Peaxi162Scf00444g00840 Petunia axillaris HOM05D000607 ORTHO05D000518 1.3e-07 59.7 84 51.2
Zm00001eb404100 Zea mays HOM05D000607 ORTHO05D000518 1.3e-07 59.7 83 47.0
TAR636G2948 Trochodendron aralioides HOM05D000607 ORTHO05D000518 1.7e-07 59.3 83 42.2
unitig_52.g17745 Utricularia gibba HOM05D000607 ORTHO05D000518 1.7e-07 59.3 83 45.8
Os03g0111400 Oryza sativa ssp. japonica HOM05D000607 ORTHO05D000518 2.2e-07 58.9 83 44.6
unitig_0.g2477 Utricularia gibba HOM05D000607 ORTHO05D000518 2.2e-07 58.9 83 47.0
Zm00001eb044060 Zea mays HOM05D000607 ORTHO05D000518 2.2e-07 58.9 83 45.8
Cc02_g02980 Coffea canephora HOM05D000607 ORTHO05D000518 2.9e-07 58.5 83 48.2
Nn1g01468 Nelumbo nucifera HOM05D000607 ORTHO05D000518 2.9e-07 58.5 83 47.0
Psat7g192880 Pisum sativum HOM05D000607 ORTHO05D000518 2.9e-07 58.5 83 48.2
Eucgr.D01867 Eucalyptus grandis HOM05D000607 ORTHO05D000518 3.8e-07 58.2 98 41.8
Solyc03g025800.3 Solanum lycopersicum HOM05D000607 ORTHO05D000518 3.8e-07 58.2 59 64.4
Peaxi162Scf00102g01540 Petunia axillaris HOM05D000607 ORTHO05D000518 5.0e-07 57.8 64 53.1
CiPaw.11G137700 Carya illinoinensis HOM05D000607 ORTHO05D000518 6.5e-07 57.4 58 55.2
TAR636G2619 Trochodendron aralioides HOM05D000607 ORTHO05D000518 6.5e-07 57.4 83 41.0
Ciclev10023788m.g Citrus clementina HOM05D000607 ORTHO05D000518 8.5e-07 57.0 58 55.2
PGR142G1784 Punica granatum HOM05D000607 ORTHO05D000518 8.5e-07 57.0 58 60.3
TAR636G0390 Trochodendron aralioides HOM05D000607 ORTHO05D000518 8.5e-07 57.0 83 41.0
SalBow2G0992 Salvia bowleyana HOM05D000607 ORTHO05D000518 4.2e-06 54.7 58 53.4
ATR1126G057 Amborella trichopoda HOM05D000607 ORTHO05D000518 9.4e-06 53.5 83 43.4


User provided reference genes

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