Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027371 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 5.7e-36 153.7 75 100.0
CSS0018594 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.6e-17 92.4 69 69.6
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.8e-16 87.8 45 93.3
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.8e-16 87.8 45 93.3
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 8.0e-14 80.1 45 82.2
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 1.8e-13 79.0 45 82.2
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 1.5e-12 75.9 45 80.0
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 2.8e-11 71.6 45 68.9
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 4.8e-11 70.9 45 73.3
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 6.3e-11 70.5 44 75.0
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 8.3e-11 70.1 46 67.4
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 2.4e-10 68.6 46 65.2
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 7.0e-10 67.0 40 70.0
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 9.1e-10 66.6 48 60.4
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 2.0e-09 65.5 42 66.7
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 3.5e-09 64.7 43 62.8
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 3.5e-09 64.7 48 56.2
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 4.5e-09 64.3 42 61.9
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 4.5e-09 64.3 43 67.4
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 4.5e-09 64.3 43 67.4
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 4.5e-09 64.3 43 67.4
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 5.9e-09 63.9 43 67.4
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 5.9e-09 63.9 45 62.2
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 7.7e-09 63.5 42 64.3
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 7.7e-09 63.5 42 64.3
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 7.7e-09 63.5 46 60.9
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 1.0e-08 63.2 45 57.8
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 1.0e-08 63.2 47 57.4
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 1.7e-08 62.4 42 61.9
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 1.7e-08 62.4 45 64.4
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 1.7e-08 62.4 39 66.7
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 1.7e-08 62.4 43 62.8
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 1.7e-08 62.4 41 68.3
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 2.2e-08 62.0 39 66.7
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 2.2e-08 62.0 43 60.5
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 2.9e-08 61.6 41 68.3
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 2.9e-08 61.6 45 64.4
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 2.9e-08 61.6 46 60.9
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 3.8e-08 61.2 41 61.0
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 3.8e-08 61.2 41 61.0
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 3.8e-08 61.2 41 61.0
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 3.8e-08 61.2 41 61.0
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 3.8e-08 61.2 41 61.0
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 3.8e-08 61.2 47 57.4
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 3.8e-08 61.2 42 64.3
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 3.8e-08 61.2 42 64.3
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 3.8e-08 61.2 50 54.0
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 3.8e-08 61.2 42 64.3
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 3.8e-08 61.2 43 65.1
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 5.0e-08 60.8 42 64.3
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 5.0e-08 60.8 44 65.9
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 6.5e-08 60.5 41 65.9
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 6.5e-08 60.5 44 63.6
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 6.5e-08 60.5 41 61.0
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 6.5e-08 60.5 42 59.5
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 8.5e-08 60.1 41 58.5
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 8.5e-08 60.1 41 58.5
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 8.5e-08 60.1 41 58.5
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 1.1e-07 59.7 42 64.3
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 1.1e-07 59.7 42 61.9
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 1.5e-07 59.3 41 61.0
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 1.5e-07 59.3 44 59.1
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 1.5e-07 59.3 39 66.7
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 1.9e-07 58.9 44 59.1
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 1.9e-07 58.9 42 59.5
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 2.5e-07 58.5 41 56.1
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 2.5e-07 58.5 44 59.1
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 2.5e-07 58.5 44 59.1
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 2.5e-07 58.5 44 59.1
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 3.2e-07 58.2 50 50.0
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 4.2e-07 57.8 39 64.1
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 5.5e-07 57.4 40 62.5
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 5.5e-07 57.4 37 70.3
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 7.2e-07 57.0 44 56.8
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 9.4e-07 56.6 43 58.1
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 9.4e-07 56.6 42 54.8
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 1.2e-06 56.2 44 56.8
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 1.2e-06 56.2 42 57.1
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 1.2e-06 56.2 42 57.1
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 3.6e-06 54.7 42 52.4
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 3.6e-06 54.7 37 67.6
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 4.7e-06 54.3 41 56.1
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 6.1e-06 53.9 43 55.8
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 6.1e-06 53.9 43 55.8
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 8.0e-06 53.5 35 68.6
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 8.0e-06 53.5 43 53.5
SMO117G0311 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 8.0e-06 53.5 44 47.7


User provided reference genes

Program Settings