Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027349 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 4.3e-172 607.8 294 100.0
CSS0002421 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 4.3e-156 554.7 409 71.4
Actinidia15119 Actinidia chinensis HOM05D006855 ORTHO05D008695 8.0e-126 454.1 410 58.8
Dinv14753 Davidia involucrata HOM05D006855 ORTHO05D008695 4.1e-114 415.2 410 53.7
TAR629G1507 Trochodendron aralioides HOM05D006855 ORTHO05D008695 6.8e-109 397.9 414 50.5
Nn3g16630 Nelumbo nucifera HOM05D006855 ORTHO05D008695 1.4e-106 390.2 417 50.4
GSVIVG01000584001 Vitis vinifera HOM05D006855 ORTHO05D008695 3.5e-105 385.6 414 50.0
Lsat_1_v5_gn_8_153661 Lactuca sativa HOM05D006855 ORTHO05D008695 5.6e-103 378.3 389 51.7
HanXRQChr12g0371791 Helianthus annuus HOM05D006855 ORTHO05D008695 1.4e-101 373.6 393 50.4
MD13G1105700 Malus domestica HOM05D006855 ORTHO05D008695 4.6e-97 358.6 407 47.7
Manes.12G019600 Manihot esculenta HOM05D006855 ORTHO05D008695 7.8e-97 357.8 405 48.4
Solyc01g008900.4 Solanum lycopersicum HOM05D006855 ORTHO05D008695 3.0e-96 355.9 400 48.2
Potri.010G051200 Populus trichocarpa HOM05D006855 ORTHO05D008695 6.6e-96 354.8 410 48.5
CAN.G379.20 Capsicum annuum HOM05D006855 ORTHO05D008695 1.1e-95 354.0 403 46.9
Nitab4.5_0015117g0010 Nicotiana tabacum HOM05D006855 ORTHO05D008695 1.1e-95 354.0 402 48.3
Cc11_g16140 Coffea canephora HOM05D006855 ORTHO05D008695 1.9e-95 353.2 406 47.8
Peaxi162Scf00050g00819 Petunia axillaris HOM05D006855 ORTHO05D008695 2.5e-95 352.8 401 48.6
Sopen01g004390 Solanum pennellii HOM05D006855 ORTHO05D008695 5.6e-95 351.7 397 47.6
PGSC0003DMG400022710 Solanum tuberosum HOM05D006855 ORTHO05D008695 1.2e-94 350.5 400 47.5
Aqoxy3G00656 Aquilegia oxysepala HOM05D006855 ORTHO05D008695 2.8e-94 349.4 404 47.0
Aqoxy3G01366 Aquilegia oxysepala HOM05D006855 ORTHO05D008695 2.8e-94 349.4 404 47.0
Duzib248G0606 Durio zibethinus HOM05D006855 ORTHO05D008695 1.4e-93 347.1 412 46.6
RcHm_v2.0_Chr4g0432431 Rosa chinensis HOM05D006855 ORTHO05D008695 3.1e-93 345.9 407 47.2
Atru.chr11.2187 Acer truncatum HOM05D006855 ORTHO05D008695 6.8e-93 344.7 411 46.5
FAN12G0810 Fragaria x ananassa HOM05D006855 ORTHO05D008695 6.8e-93 344.7 407 47.2
Lj3A1062T101 Lonicera japonica HOM05D006855 ORTHO05D008695 8.9e-93 344.4 389 49.6
FAN17G2133 Fragaria x ananassa HOM05D006855 ORTHO05D008695 1.2e-92 344.0 407 47.2
PGR083G2447 Punica granatum HOM05D006855 ORTHO05D008695 2.6e-92 342.8 385 48.3
TWI75G0344 Tripterygium wilfordii HOM05D006855 ORTHO05D008695 3.4e-92 342.4 409 47.2
Ciclev10031545m.g Citrus clementina HOM05D006855 ORTHO05D008695 1.7e-91 340.1 411 45.7
Lj6g0028045 Lotus japonicus HOM05D006855 ORTHO05D008695 3.7e-91 339.0 402 46.0
FAN22G2334 Fragaria x ananassa HOM05D006855 ORTHO05D008695 1.9e-90 336.7 407 46.7
Thecc.02G266900 Theobroma cacao HOM05D006855 ORTHO05D008695 2.4e-90 336.3 410 46.6
CiPaw.05G176800 Carya illinoinensis HOM05D006855 ORTHO05D008695 9.2e-90 334.3 408 45.3
Eucgr.H02451 Eucalyptus grandis HOM05D006855 ORTHO05D008695 9.2e-90 334.3 410 44.6
PSO210G7557 Papaver somniferum HOM05D006855 ORTHO05D008695 9.2e-90 334.3 416 45.9
COL.COLO4_23530 Corchorus olitorius HOM05D006855 ORTHO05D008695 2.0e-89 333.2 408 46.6
PSO478G2928 Papaver somniferum HOM05D006855 ORTHO05D008695 1.3e-88 330.5 416 46.4
ClCG05G026110 Citrullus lanatus HOM05D006855 ORTHO05D008695 3.0e-88 329.3 407 44.7
FAN07G2733 Fragaria x ananassa HOM05D006855 ORTHO05D008695 3.9e-88 328.9 397 46.6
CANSAT01G1415 Cannabis sativa HOM05D006855 ORTHO05D008695 5.0e-88 328.6 406 46.1
ECA233G5842 Erigeron canadensis HOM05D000068 ORTHO05D000084 1.1e-87 327.4 364 49.7
Lalb_Chr11g0075551 Lupinus albus HOM05D006855 ORTHO05D008695 1.1e-87 327.4 411 45.3
Medtr3g086360 Medicago truncatula HOM05D006855 ORTHO05D008695 2.5e-87 326.2 408 44.1
Gohir.D12G150600 Gossypium hirsutum HOM05D006855 ORTHO05D008695 3.3e-87 325.9 412 44.7
arahy.Tifrunner.gnm1.ann1.FYV5AX Arachis hypogaea HOM05D006855 ORTHO05D008695 1.2e-86 323.9 405 44.2
MSTRG.548 Avicennia marina HOM05D006855 ORTHO05D008695 1.2e-86 323.9 405 44.7
MELO3C011916.2 Cucumis melo HOM05D006855 ORTHO05D008695 2.1e-86 323.2 397 44.6
TPR.G5676 Trifolium pratense HOM05D006855 ORTHO05D008695 2.1e-86 323.2 406 44.6
Gorai.008G162100 Gossypium raimondii HOM05D006855 ORTHO05D008695 4.7e-86 322.0 412 44.2
AUR62024216 Chenopodium quinoa HOM05D006855 ORTHO05D008695 1.1e-85 320.9 406 43.6
Glyma.11G244400 Glycine max HOM05D006855 ORTHO05D008695 1.4e-85 320.5 408 45.6
Ah.02g130370 Amaranthus hybridus HOM05D006855 ORTHO05D008695 2.3e-85 319.7 406 43.6
Psat5g092640 Pisum sativum HOM05D006855 ORTHO05D008695 2.3e-85 319.7 407 44.0
Prupe.1G240700 Prunus persica HOM05D006855 ORTHO05D008695 1.3e-83 313.9 350 48.0
CsaV3_5G030740 Cucumis sativus L. HOM05D006855 ORTHO05D008695 1.7e-83 313.5 398 43.5
ATR0796G133 Amborella trichopoda HOM05D006855 ORTHO05D008695 2.4e-82 309.7 408 42.9
Migut.K00633 Erythranthe guttata HOM05D006855 ORTHO05D008695 2.4e-82 309.7 401 44.1
Haze_12292 Corylus avellana HOM05D006855 ORTHO05D008695 3.2e-82 309.3 493 39.1
Carub.0005s0400 Capsella rubella HOM05D006855 ORTHO05D008695 5.4e-82 308.5 396 43.4
Thhalv10004274m.g Eutrema salsugineum HOM05D006855 ORTHO05D008695 7.1e-82 308.1 394 44.2
Phvul.001G256400 Phaseolus vulgaris HOM05D006855 ORTHO05D008695 7.1e-82 308.1 414 44.0
Sed0018660 Sechium edule HOM05D006855 ORTHO05D008695 1.2e-81 307.4 412 42.5
C07p35130 Brassica napus HOM05D006855 ORTHO05D008695 1.6e-81 307.0 385 44.9
Gohir.A12G146000 Gossypium hirsutum HOM05D006855 ORTHO05D008695 1.6e-81 307.0 403 43.9
CDE02G0600 Ceratophyllum demersum HOM05D006855 ORTHO05D008695 2.1e-81 306.6 395 43.8
AL5G14830 Arabidopsis lyrata HOM05D006855 ORTHO05D008695 4.6e-81 305.4 377 45.4
THA.LOC104825678 Tarenaya hassleriana HOM05D006855 ORTHO05D008695 2.3e-80 303.1 407 42.8
BolC7t44041H Brassica oleracea HOM05D006855 ORTHO05D008695 5.1e-80 302.0 385 44.2
CARHR147120 Cardamine hirsuta HOM05D006855 ORTHO05D008695 1.1e-79 300.8 393 43.5
Aa31LG2G6230 Aethionema arabicum HOM05D006855 ORTHO05D008695 4.3e-79 298.9 404 42.3
BcaC06g33927 Brassica carinata HOM05D006855 ORTHO05D008695 4.3e-79 298.9 385 43.4
AUR62005523 Chenopodium quinoa HOM05D006855 ORTHO05D008695 1.6e-78 297.0 370 44.1
Sp2g15320 Schrenkiella parvula HOM05D006855 ORTHO05D008695 8.1e-78 294.7 394 43.1
A06p42230 Brassica napus HOM05D006855 ORTHO05D008695 1.4e-77 293.9 381 44.1
BraA06t27139Z Brassica rapa HOM05D006855 ORTHO05D008695 1.4e-77 293.9 381 44.1
BcaC06g31090 Brassica carinata HOM05D006855 ORTHO05D008695 5.2e-77 292.0 386 44.3
SGA_v2.0_scaffold100G29585 Striga asiatica HOM05D006855 ORTHO05D008695 2.6e-76 289.7 398 42.7
Os01g0695600 Oryza sativa ssp. japonica HOM05D006855 ORTHO05D008695 7.6e-76 288.1 289 51.6
SalBow2G0666 Salvia bowleyana HOM05D006855 ORTHO05D008695 1.1e-74 284.3 412 41.7
VMungo1383G3215 Vigna mungo HOM05D000933 ORTHO05D000820 2.7e-73 279.6 398 42.5
vmacro16160 Vaccinium macrocarpon HOM05D006855 ORTHO05D008695 6.0e-73 278.5 201 69.2
EL10As2g23185 Beta vulgaris HOM05D006855 ORTHO05D008695 7.8e-73 278.1 405 40.7
Nitab4.5_0000718g0180 Nicotiana tabacum HOM05D006855 ORTHO05D008695 8.6e-72 274.6 398 42.0
HPP92_023148 Vanilla planifolia HOM05D006855 ORTHO05D008695 7.6e-68 261.5 400 37.8
MBI19_g16323_MAGBIO Magnolia biondii HOM05D006855 ORTHO05D008695 3.9e-64 249.2 354 41.2
Zm00001eb155910 Zea mays HOM05D006855 ORTHO05D008695 3.9e-64 249.2 390 38.5
Cpa.g.sc33.79 Carica papaya HOM05D006855 ORTHO05D008695 6.2e-62 241.9 294 45.6
Ca_25129_v3 Cicer arietinum L. HOM05D006855 ORTHO05D008695 3.1e-61 239.6 176 63.1
unitig_699.g19941 Utricularia gibba HOM05D002671 ORTHO05D001380 1.9e-55 220.3 383 36.8
Mapoly0058s0079 Marchantia polymorpha HOM05D006855 ORTHO05D008695 7.4e-55 218.4 396 34.1
SEGI_08498 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 1.8e-53 213.8 188 53.2
Pp3c22_21870 Physcomitrium patens HOM05D006855 ORTHO05D008695 1.2e-52 211.1 346 35.8
AT3G26115 Arabidopsis thaliana HOM05D006855 ORTHO05D008695 4.6e-49 199.1 327 37.3
QL03p056162 Quercus lobata HOM05D006855 ORTHO05D008695 6.7e-48 195.3 151 61.6
FAN14G3171 Fragaria x ananassa HOM05D006855 ORTHO05D008695 2.5e-47 193.4 176 55.1
FAN18G3688 Fragaria x ananassa HOM05D006855 ORTHO05D008695 4.3e-47 192.6 156 60.9
FAN08G3042 Fragaria x ananassa HOM05D006855 ORTHO05D008695 5.3e-45 185.7 149 61.1
QL03p056156 Quercus lobata HOM05D006855 ORTHO05D008695 9.0e-45 184.9 277 39.7
Carub.0005s0511 Capsella rubella HOM05D006855 ORTHO05D008695 7.6e-44 181.8 173 52.6
SMO203G0085 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 1.3e-43 181.0 325 35.4
CSS0015338 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 1.4e-42 177.6 102 84.3
CSS0040008 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 2.5e-42 176.8 117 75.2
FvH4_4g25240 Fragaria vesca HOM05D006855 ORTHO05D008695 6.9e-37 158.7 117 65.0
Sc11g0000830 Simmondsia chinensis HOM05D006855 ORTHO05D008695 1.3e-35 154.5 284 35.6
Hund25410 Selenicereus undatus HOM05D006855 ORTHO05D008695 2.7e-33 146.7 285 34.7
SEGI_15055 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 9.7e-31 138.3 276 32.2
Cre01.g031850 Chlamydomonas reinhardtii HOM05D006855 ORTHO05D008695 4.8e-30 136.0 398 28.4
SMO327G0033 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 1.4e-29 134.4 286 31.5
FAN15G2953 Fragaria x ananassa HOM05D006855 ORTHO05D008695 4.1e-29 132.9 115 57.4
arahy.Tifrunner.gnm1.ann1.74BAAJ Arachis hypogaea HOM05D006855 ORTHO05D008695 9.1e-29 131.7 102 58.8
FAN23G2199 Fragaria x ananassa HOM05D006855 ORTHO05D008695 4.5e-28 129.4 112 57.1
Sabra10G0018700 Salix brachista HOM05D000933 ORTHO05D000820 1.7e-27 127.5 103 61.2
SMO203G0059 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 2.1e-25 120.6 304 30.6
SMO327G0043 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 1.0e-24 118.2 229 33.6
SMO203G0223 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 3.3e-15 86.7 231 29.0
ECA233G3820 Erigeron canadensis HOM05D006855 ORTHO05D008695 5.0e-11 72.8 47 74.5
MBI19_g46696_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 5.0e-11 72.8 248 26.6
unitig_750.g28458 Utricularia gibba HOM05D005071 ORTHO05D006069 1.9e-10 70.9 210 27.6
Peaxi162Scf00171g00530 Petunia axillaris HOM05D005071 ORTHO05D006069 1.6e-09 67.8 248 27.0
VMungo1383G3417 Vigna mungo HOM05D006350 ORTHO05D007850 3.6e-09 66.6 67 47.8
Actinidia17702 Actinidia chinensis HOM05D005071 ORTHO05D006069 6.1e-09 65.9 178 27.5
Sopen03g028930 Solanum pennellii HOM05D005071 ORTHO05D006069 6.1e-09 65.9 181 24.9
CSS0029252 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 8.0e-09 65.5 186 25.8
MBI19_g02947_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 1.4e-08 64.7 226 26.5
Solyc03g098230.3 Solanum lycopersicum HOM05D005071 ORTHO05D006069 2.3e-08 63.9 181 24.3
Rhsim08G0124200 Rhododendron simsii HOM05D005071 ORTHO05D006069 3.0e-08 63.5 205 24.9
Lj5C165T19 Lonicera japonica HOM05D005071 ORTHO05D006069 4.0e-08 63.2 173 27.7
Lalb_Chr09g0330201 Lupinus albus HOM05D005071 ORTHO05D006069 4.0e-08 63.2 178 27.0
TWI81G0487 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 4.0e-08 63.2 178 26.4
Psat7g000520 Pisum sativum HOM05D005071 ORTHO05D006069 8.8e-08 62.0 178 24.7
TWI81G0721 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 8.8e-08 62.0 178 26.4
Actinidia37455 Actinidia chinensis HOM05D006855 ORTHO05D055804 1.2e-07 61.6 34 79.4
SGA_v2.0_scaffold25G10767 Striga asiatica HOM05D005071 ORTHO05D006069 1.5e-07 61.2 177 26.6
Sabra12G0027400 Salix brachista HOM05D005071 ORTHO05D006069 2.6e-07 60.5 187 24.6
Aqoxy3G04133 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 3.3e-07 60.1 144 25.7
FvH4_5g18030 Fragaria vesca HOM05D005071 ORTHO05D006069 3.3e-07 60.1 178 27.0
SMO364G0181 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 3.3e-07 60.1 182 25.8
Atru.chr9.1568 Acer truncatum HOM05D005071 ORTHO05D006069 4.4e-07 59.7 178 25.8
Peaxi162Scf00171g00532 Petunia axillaris HOM05D005071 ORTHO05D006069 4.4e-07 59.7 246 26.0
arahy.Tifrunner.gnm1.ann1.ESBK1T Arachis hypogaea HOM05D005071 ORTHO05D006069 5.7e-07 59.3 188 25.0
RcHm_v2.0_Chr7g0177581 Rosa chinensis HOM05D005071 ORTHO05D006069 7.5e-07 58.9 178 25.8
ATR0598G263 Amborella trichopoda HOM05D005071 ORTHO05D006069 9.7e-07 58.5 139 28.1
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 9.7e-07 58.5 44 56.8
Prupe.5G240500 Prunus persica HOM05D005071 ORTHO05D006069 9.7e-07 58.5 178 25.3
THA.LOC104809825 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 9.7e-07 58.5 142 27.5
arahy.Tifrunner.gnm1.ann1.ZJN9EZ Arachis hypogaea HOM05D005071 ORTHO05D006069 2.2e-06 57.4 188 25.0
CDE11G0073 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 2.2e-06 57.4 187 25.1
Potri.012G038900 Populus trichocarpa HOM05D005071 ORTHO05D006069 2.8e-06 57.0 187 24.1
Pp3c15_20550 Physcomitrium patens HOM05D005071 ORTHO05D006069 3.7e-06 56.6 187 24.6
Actinidia06302 Actinidia chinensis HOM05D005071 ORTHO05D006069 6.3e-06 55.8 177 24.3
EL10Ac8g19579 Beta vulgaris HOM05D005071 ORTHO05D006069 6.3e-06 55.8 160 25.6


User provided reference genes

Program Settings