Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.4e-159 566.2 285 100.0
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.4e-119 432.6 312 72.8
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.4e-119 432.6 312 72.8
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 4.4e-113 411.8 309 69.9
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 1.2e-110 403.7 309 68.6
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 2.7e-110 402.5 313 69.3
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 1.3e-109 400.2 312 67.6
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 2.3e-109 399.4 309 67.6
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 5.0e-109 398.3 309 68.6
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 1.1e-108 397.1 331 66.2
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 4.3e-108 395.2 311 67.2
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 9.5e-108 394.0 313 67.1
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 9.5e-108 394.0 306 68.3
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 1.2e-107 393.7 312 66.7
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 6.1e-107 391.3 310 67.4
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 8.0e-107 391.0 309 67.6
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 1.0e-106 390.6 313 66.5
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 1.8e-106 389.8 312 67.3
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 1.8e-106 389.8 311 66.2
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 2.3e-106 389.4 306 67.0
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 4.0e-106 388.7 311 66.2
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 5.2e-106 388.3 312 67.3
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 1.2e-105 387.1 312 65.7
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 2.6e-105 386.0 309 66.3
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 2.6e-105 386.0 311 65.9
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 3.4e-105 385.6 308 66.9
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 4.4e-105 385.2 314 65.0
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 4.4e-105 385.2 311 67.5
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 4.4e-105 385.2 311 66.6
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 5.8e-105 384.8 306 66.3
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 9.8e-105 384.0 309 66.7
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 1.7e-104 383.3 310 67.1
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 1.7e-104 383.3 316 64.9
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 1.7e-104 383.3 312 66.0
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 1.7e-104 383.3 311 66.6
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 1.7e-104 383.3 309 66.0
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.9e-104 382.5 311 66.6
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 3.7e-104 382.1 309 65.4
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 4.9e-104 381.7 311 66.6
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 8.3e-104 380.9 312 65.4
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 8.3e-104 380.9 308 66.2
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 8.3e-104 380.9 311 66.6
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 1.1e-103 380.6 310 65.8
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 1.4e-103 380.2 311 65.6
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 1.9e-103 379.8 311 66.6
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 1.9e-103 379.8 311 65.6
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 1.9e-103 379.8 312 65.7
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 3.2e-103 379.0 311 65.9
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 3.2e-103 379.0 312 65.4
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 4.1e-103 378.6 312 66.0
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 5.4e-103 378.3 311 65.3
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 2.0e-102 376.3 305 66.2
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 2.0e-102 376.3 312 65.7
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 3.5e-102 375.6 312 65.7
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.5e-102 375.6 311 65.6
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.6e-102 375.2 305 65.9
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 2.3e-101 372.9 310 64.5
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 3.0e-101 372.5 309 64.4
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 6.6e-101 371.3 310 65.5
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 1.9e-100 369.8 308 63.0
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 1.9e-100 369.8 308 63.0
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 5.6e-100 368.2 312 64.7
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 9.5e-100 367.5 312 62.8
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 1.6e-99 366.7 311 64.3
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 2.1e-99 366.3 307 65.1
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 6.2e-99 364.8 317 63.1
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 8.0e-99 364.4 312 64.1
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 1.4e-98 363.6 313 62.6
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 4.0e-98 362.1 309 62.1
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 1.2e-97 360.5 310 64.5
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 2.0e-97 359.8 308 61.0
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 3.4e-97 359.0 308 63.6
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 3.4e-97 359.0 311 62.1
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 3.4e-97 359.0 312 62.8
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 4.4e-97 358.6 306 63.1
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 1.3e-96 357.1 311 61.4
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 1.7e-96 356.7 305 62.3
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 2.9e-96 355.9 322 61.2
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 2.9e-96 355.9 312 61.9
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 4.9e-96 355.1 308 62.3
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 6.4e-96 354.8 320 60.9
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 6.4e-96 354.8 258 71.7
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 6.4e-96 354.8 315 61.3
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 8.3e-96 354.4 321 60.7
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 8.3e-96 354.4 312 62.2
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 4.1e-95 352.1 313 62.6
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.2e-94 350.5 272 67.3
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 1.6e-94 350.1 320 60.3
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 2.7e-94 349.4 269 68.0
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 2.7e-94 349.4 258 70.5
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 4.6e-94 348.6 305 61.3
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 6.0e-94 348.2 320 60.3
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 1.7e-93 346.7 333 59.2
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 1.5e-92 343.6 321 58.6
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 1.9e-92 343.2 330 56.1
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 3.3e-92 342.4 321 59.2
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 4.3e-92 342.0 321 59.2
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 7.3e-92 341.3 311 60.1
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.2e-91 340.5 270 66.3
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 1.6e-91 340.1 320 60.0
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 1.6e-91 340.1 272 67.3
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 6.2e-91 338.2 299 59.5
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 5.2e-90 335.1 328 57.9
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 2.6e-89 332.8 314 59.2
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 3.4e-89 332.4 308 59.7
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 1.9e-87 326.6 318 57.5
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 3.5e-86 322.4 320 55.0
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 3.3e-84 315.8 305 57.7
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 4.3e-84 315.5 322 54.3
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 4.0e-82 308.9 305 57.4
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 1.5e-81 307.0 294 60.9
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 7.6e-81 304.7 321 53.9
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 3.2e-79 299.3 314 54.5
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 1.7e-77 293.5 199 75.4
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 1.1e-74 284.3 229 63.8
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 4.9e-72 275.4 230 63.9
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 1.0e-69 267.7 332 49.4
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 1.3e-69 267.3 307 54.1
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 3.9e-69 265.8 216 66.7
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 3.9e-69 265.8 301 54.5
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 3.3e-68 262.7 337 46.3
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 1.3e-67 260.8 196 71.4
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 1.2e-65 254.2 308 49.4
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 4.6e-62 242.3 208 61.5
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 1.6e-59 233.8 314 47.5
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 3.7e-59 232.6 236 53.8
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 9.0e-58 228.0 158 74.1
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 1.8e-53 213.8 171 69.0
Atru.chr6.2249 Acer truncatum HOM05D003958 ORTHO05D004864 2.5e-52 209.9 165 67.3
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 6.9e-50 201.8 170 62.9
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 1.3e-48 197.6 318 40.6
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 2.9e-48 196.4 163 60.7
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 1.9e-47 193.7 272 46.0
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 6.3e-43 178.7 347 37.8
Ah.07g203270 Amaranthus hybridus HOM05D003958 ORTHO05D004864 1.5e-41 174.1 150 62.0
Gohir.A10G243400 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.3e-37 160.2 131 64.9
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.3e-35 154.5 285 40.4
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 2.8e-35 153.3 241 41.1
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.5e-33 147.5 148 54.1
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 3.4e-33 146.4 263 36.1
Gohir.A06G000101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.0e-32 142.5 93 77.4
Gohir.D11G349300 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.6e-30 137.5 121 61.2
Gohir.D08G275428 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.9e-30 135.2 121 60.3
Gorai.004G293900 Gossypium raimondii HOM05D003958 ORTHO05D004864 7.9e-30 135.2 121 60.3
Gorai.006G274500 Gossypium raimondii HOM05D003958 ORTHO05D004864 7.9e-30 135.2 121 60.3
Gohir.D01G222101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.0e-29 134.8 118 60.2
Sopen06g018800 Solanum pennellii HOM05D003958 ORTHO05D004864 3.0e-29 133.3 131 60.3
Gohir.A03G000004 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.1e-29 132.5 88 77.3
Atru.chr6.2248 Acer truncatum HOM05D003958 ORTHO05D004864 1.1e-28 131.3 94 67.0
Gohir.A01G232100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.1e-28 131.3 121 57.9
Gohir.D09G250100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.0e-28 130.6 118 60.2
Gohir.D03G178200 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.3e-27 127.9 118 58.5
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.8e-27 126.7 159 47.2
Gorai.007G380200 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.7e-27 126.3 115 59.1
FAN05G2568 Fragaria x ananassa HOM05D003958 ORTHO05D004864 5.0e-24 115.9 137 48.2
Gohir.1Z049515 Gossypium hirsutum HOM05D003958 ORTHO05D015143 4.2e-23 112.8 102 58.8
Gorai.006G275300 Gossypium raimondii HOM05D003958 ORTHO05D015143 1.4e-21 107.8 102 54.9
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 1.4e-18 97.8 94 54.3
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 1.4e-18 97.8 94 54.3
CSS0019434 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 4.1e-18 96.3 133 49.6
Gorai.013G272500 Gossypium raimondii HOM05D003958 ORTHO05D004864 7.0e-18 95.5 91 57.1
Gohir.D11G176600 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.6e-17 93.6 91 56.0
Gohir.1Z049410 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.5e-17 93.2 64 73.4
Gohir.D07G000766 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.5e-17 93.2 91 56.0
Gohir.A09G249500 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.0e-16 91.7 64 71.9
Gorai.001G000100 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.0e-16 91.7 83 57.8
Gorai.007G000600 Gossypium raimondii HOM05D001392 ORTHO05D014312 5.0e-16 89.4 75 58.7
Nitab4.5_0001556g0020 Nicotiana tabacum HOM05D003958 ORTHO05D004864 9.4e-15 85.1 81 55.6
FAN05G2311 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.4e-13 81.3 102 45.1
Gohir.D08G275100 Gossypium hirsutum HOM05D003958 ORTHO05D005872 1.5e-12 77.8 50 78.0
Gorai.N025700 Gossypium raimondii HOM05D003958 ORTHO05D005872 1.5e-12 77.8 50 78.0
Gohir.1Z049564 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.4e-12 76.3 50 76.0
Gohir.1Z049570 Gossypium hirsutum HOM05D003958 ORTHO05D005872 4.4e-12 76.3 50 76.0
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 1.4e-10 71.2 47 74.5
Medtr2g014570 Medicago truncatula HOM05D003958 ORTHO05D004864 2.5e-07 60.5 66 54.5


User provided reference genes

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