Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027293 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 4.1e-187 657.9 328 100.0
CSS0022256 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 6.6e-137 491.1 369 73.4
Haze_17499 Corylus avellana HOM05D003910 ORTHO05D004622 1.8e-134 483.0 351 74.6
Rhsim05G0148200 Rhododendron simsii HOM05D003910 ORTHO05D004622 1.2e-133 480.3 351 72.6
Dinv07208 Davidia involucrata HOM05D003910 ORTHO05D004622 1.7e-132 476.5 351 73.8
Cfa018581 Carpinus fangiana HOM05D003910 ORTHO05D004622 2.2e-132 476.1 351 73.8
CiPaw.16G066200 Carya illinoinensis HOM05D003910 ORTHO05D004622 1.1e-131 473.8 351 73.2
Sabra05G0135000 Salix brachista HOM05D003910 ORTHO05D004622 2.4e-123 446.0 354 68.9
Solyc08g069030.4 Solanum lycopersicum HOM05D003910 ORTHO05D004622 3.0e-121 439.1 356 68.0
PGSC0003DMG400029545 Solanum tuberosum HOM05D003910 ORTHO05D004622 1.9e-120 436.4 356 67.4
CAN.G908.4 Capsicum annuum HOM05D003910 ORTHO05D004622 5.6e-120 434.9 358 67.3
SGA_v2.0_scaffold52G18960 Striga asiatica HOM05D003910 ORTHO05D004622 7.3e-120 434.5 361 66.8
Nn4g23592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 1.2e-119 433.7 327 73.1
CANSAT25G1111 Cannabis sativa HOM05D003910 ORTHO05D004622 2.1e-119 433.0 354 68.1
Dinv27301 Davidia involucrata HOM05D003910 ORTHO05D004622 8.1e-119 431.0 302 77.5
MSTRG.25378 Avicennia marina HOM05D003910 ORTHO05D004622 1.8e-118 429.9 354 67.5
Thecc.08G127500 Theobroma cacao HOM05D003910 ORTHO05D004622 4.0e-118 428.7 351 67.5
Cpa.g.sc64.96 Carica papaya HOM05D003910 ORTHO05D004622 2.0e-117 426.4 351 67.2
AL2G28910 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 4.4e-117 425.2 352 66.2
AT1G69740 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 7.5e-117 424.5 352 66.2
Sp5g24850 Schrenkiella parvula HOM05D003910 ORTHO05D004622 7.5e-117 424.5 351 66.1
Gohir.D05G237801 Gossypium hirsutum HOM05D003910 ORTHO05D004622 9.8e-117 424.1 351 67.0
Gorai.009G246200 Gossypium raimondii HOM05D003910 ORTHO05D004622 9.8e-117 424.1 351 67.0
Sopen08g022680 Solanum pennellii HOM05D003910 ORTHO05D004622 3.7e-116 422.2 356 66.0
THA.LOC104813147 Tarenaya hassleriana HOM05D003910 ORTHO05D004622 3.7e-116 422.2 352 67.0
HanXRQChr17g0559761 Helianthus annuus HOM05D003910 ORTHO05D004622 8.3e-116 421.0 352 65.9
QL09p034136 Quercus lobata HOM05D003910 ORTHO05D004622 8.3e-116 421.0 351 66.4
Gohir.A05G235500 Gossypium hirsutum HOM05D003910 ORTHO05D004622 1.1e-115 420.6 351 66.4
Lsat_1_v5_gn_8_141520 Lactuca sativa HOM05D003910 ORTHO05D004622 1.4e-115 420.2 351 65.5
COL.COLO4_24698 Corchorus olitorius HOM05D003910 ORTHO05D004622 1.9e-115 419.9 351 65.8
Duzib041G0414 Durio zibethinus HOM05D003910 ORTHO05D004622 7.1e-115 417.9 351 66.1
PGR044G2730 Punica granatum HOM05D003910 ORTHO05D004622 7.1e-115 417.9 352 65.9
BcaC08g46419 Brassica carinata HOM05D003910 ORTHO05D004622 1.6e-114 416.8 351 66.4
C06p43500 Brassica napus HOM05D003910 ORTHO05D004622 2.1e-114 416.4 351 66.4
BolC6t39425H Brassica oleracea HOM05D003910 ORTHO05D004622 2.1e-114 416.4 351 66.4
Thhalv10018595m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 3.5e-114 415.6 351 64.4
Prupe.1G494300 Prunus persica HOM05D003910 ORTHO05D004622 6.0e-114 414.8 351 67.2
Nitab4.5_0000502g0120 Nicotiana tabacum HOM05D003910 ORTHO05D004622 7.8e-114 414.5 352 65.9
Nitab4.5_0005516g0010 Nicotiana tabacum HOM05D003910 ORTHO05D004622 7.8e-114 414.5 356 64.9
BcaB03g14749 Brassica carinata HOM05D003910 ORTHO05D004622 1.0e-113 414.1 351 66.4
Potri.002G082300 Populus trichocarpa HOM05D003910 ORTHO05D004622 1.0e-113 414.1 354 65.3
Aa31LG11G8660 Aethionema arabicum HOM05D003910 ORTHO05D004622 5.1e-113 411.8 351 64.7
A07p36130 Brassica napus HOM05D003910 ORTHO05D004622 5.1e-113 411.8 353 65.7
Atru.chr13.1495 Acer truncatum HOM05D003910 ORTHO05D004622 6.6e-113 411.4 357 66.7
Carub.0002s1641 Capsella rubella HOM05D003910 ORTHO05D004622 4.3e-112 408.7 352 64.5
CARHR062800 Cardamine hirsuta HOM05D003910 ORTHO05D004622 4.3e-112 408.7 353 65.2
MD15G1346700 Malus domestica HOM05D003910 ORTHO05D004622 4.3e-112 408.7 355 65.6
GSVIVG01008851001 Vitis vinifera HOM05D003910 ORTHO05D004622 7.3e-112 407.9 351 65.5
SalBow7G1186 Salvia bowleyana HOM05D003910 ORTHO05D004622 9.5e-112 407.5 380 62.1
Migut.C01121 Erythranthe guttata HOM05D003910 ORTHO05D004622 1.6e-111 406.8 353 65.2
MD08G1161600 Malus domestica HOM05D003910 ORTHO05D004622 3.6e-111 405.6 355 65.1
TAR629G0788 Trochodendron aralioides HOM05D003910 ORTHO05D004622 6.2e-111 404.8 354 65.0
Sabra02G0064500 Salix brachista HOM05D003910 ORTHO05D004622 1.1e-110 404.1 354 64.1
Cc08_g06800 Coffea canephora HOM05D003910 ORTHO05D004622 2.3e-110 402.9 359 65.2
Manes.02G164600 Manihot esculenta HOM05D003910 ORTHO05D004622 4.0e-110 402.1 353 64.9
BraA07t31189Z Brassica rapa HOM05D003910 ORTHO05D004622 5.2e-110 401.7 351 65.0
MELO3C008086.2 Cucumis melo HOM05D003910 ORTHO05D004622 5.2e-110 401.7 351 64.7
ECA233G1142 Erigeron canadensis HOM05D003910 ORTHO05D004622 1.5e-109 400.2 351 65.0
PSO339G3693 Papaver somniferum HOM05D003910 ORTHO05D004622 3.4e-109 399.1 353 63.7
CDE10G1335 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 4.4e-109 398.7 351 65.8
PSO384G4520 Papaver somniferum HOM05D003910 ORTHO05D004622 4.4e-109 398.7 353 63.5
ClCG11G008960 Citrullus lanatus HOM05D003910 ORTHO05D004622 9.9e-109 397.5 351 64.7
Ciclev10001195m.g Citrus clementina HOM05D003910 ORTHO05D004622 2.9e-108 396.0 358 63.4
CsaV3_2G033150 Cucumis sativus L. HOM05D003910 ORTHO05D004622 2.9e-108 396.0 351 64.4
Lj7A342T56 Lonicera japonica HOM05D003910 ORTHO05D004622 4.9e-108 395.2 290 73.8
Sc16g0000040 Simmondsia chinensis HOM05D003910 ORTHO05D004622 1.1e-107 394.0 355 63.1
Manes.18G078475 Manihot esculenta HOM05D003910 ORTHO05D004622 1.4e-107 393.7 352 63.9
EL10Ac1g01030 Beta vulgaris HOM05D003910 ORTHO05D004622 1.9e-107 393.3 372 61.8
Sed0003239 Sechium edule HOM05D003910 ORTHO05D004622 9.2e-107 391.0 351 63.0
TWI60G1334 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 2.1e-106 389.8 355 63.4
AUR62019066 Chenopodium quinoa HOM05D003910 ORTHO05D004622 2.7e-106 389.4 358 63.4
CDE10G0179 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 7.8e-106 387.9 300 70.7
Ah.15g093760 Amaranthus hybridus HOM05D003910 ORTHO05D004622 1.0e-105 387.5 376 60.1
AUR62014326 Chenopodium quinoa HOM05D003910 ORTHO05D004622 2.3e-105 386.3 358 62.8
Oeu028562.1 Olea europaea HOM05D003910 ORTHO05D004622 2.3e-105 386.3 334 65.6
TWI32G0928 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 6.6e-105 384.8 362 61.6
Duzib116G0657 Durio zibethinus HOM05D003910 ORTHO05D004622 1.5e-104 383.6 349 63.3
ATR0691G248 Amborella trichopoda HOM05D003910 ORTHO05D004622 3.6e-103 379.0 351 61.3
arahy.Tifrunner.gnm1.ann1.LMC2LS Arachis hypogaea HOM05D003910 ORTHO05D004622 4.7e-103 378.6 341 62.8
arahy.Tifrunner.gnm1.ann1.YMC104 Arachis hypogaea HOM05D003910 ORTHO05D004622 4.7e-103 378.6 341 62.8
DCAR_016682 Daucus carota HOM05D003910 ORTHO05D004622 1.4e-102 377.1 307 67.4
FAN15G2864 Fragaria x ananassa HOM05D003910 ORTHO05D004622 1.4e-102 377.1 351 63.0
Glyma.06G115000 Glycine max HOM05D003910 ORTHO05D004622 1.8e-102 376.7 307 69.1
Medtr3g088610 Medicago truncatula HOM05D003910 ORTHO05D004622 2.4e-102 376.3 329 64.7
Lalb_Chr08g0241321 Lupinus albus HOM05D003910 ORTHO05D004622 3.1e-102 375.9 353 62.9
Lalb_Chr11g0066041 Lupinus albus HOM05D003910 ORTHO05D004622 8.9e-102 374.4 353 60.9
Peaxi162Scf00288g00822 Petunia axillaris HOM05D003910 ORTHO05D004622 8.9e-102 374.4 354 62.1
Phvul.009G127100 Phaseolus vulgaris HOM05D003910 ORTHO05D004622 8.9e-102 374.4 328 64.3
Eucgr.F03796 Eucalyptus grandis HOM05D003910 ORTHO05D004622 3.4e-101 372.5 353 62.6
SMO147G0120 Selaginella moellendorffii HOM05D003910 ORTHO05D004622 4.4e-101 372.1 303 67.7
SEGI_23261 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 4.4e-101 372.1 304 67.1
Lj1g0017187 Lotus japonicus HOM05D003910 ORTHO05D004622 9.9e-101 370.9 352 61.4
VMungo1309G0189 Vigna mungo HOM05D003910 ORTHO05D004622 2.2e-100 369.8 328 64.6
Glyma.04G247700 Glycine max HOM05D003910 ORTHO05D004622 4.9e-100 368.6 328 65.2
RcHm_v2.0_Chr6g0296081 Rosa chinensis HOM05D003910 ORTHO05D004622 1.6e-98 363.6 351 62.1
FvH4_2g27170 Fragaria vesca HOM05D003910 ORTHO05D004622 2.7e-98 362.8 351 61.3
FAN24G0257 Fragaria x ananassa HOM05D003910 ORTHO05D004622 2.7e-98 362.8 351 61.3
AagrBONN_evm.TU.Sc2ySwM_117.3949 Anthoceros agrestis HOM05D003910 ORTHO05D004622 3.5e-98 362.5 343 60.9
HPP92_019462 Vanilla planifolia HOM05D003910 ORTHO05D004622 7.8e-98 361.3 325 63.1
FAN27G3176 Fragaria x ananassa HOM05D003910 ORTHO05D004622 2.3e-97 359.8 351 61.0
unitig_46.g18101 Utricularia gibba HOM05D003910 ORTHO05D004622 3.0e-97 359.4 262 72.5
FAN20G2211 Fragaria x ananassa HOM05D003910 ORTHO05D004622 3.9e-97 359.0 351 61.0
Aqoxy6G02874 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 2.5e-96 356.3 329 61.7
Pp3c4_13690 Physcomitrium patens HOM05D003910 ORTHO05D004622 5.6e-96 355.1 281 68.3
Pp3c12_10600 Physcomitrium patens HOM05D003910 ORTHO05D004622 3.6e-95 352.4 281 68.0
Hma1.2p1_0129F.1_g060300 Hydrangea macrophylla HOM05D003910 ORTHO05D004622 1.1e-94 350.9 320 62.5
SHI34070 Sapria himalayana HOM05D003910 ORTHO05D004622 1.1e-94 350.9 322 60.2
Zm00001eb227310 Zea mays HOM05D003910 ORTHO05D004622 1.4e-94 350.5 287 67.6
Os06g0704600 Oryza sativa ssp. japonica HOM05D003910 ORTHO05D004622 1.8e-94 350.1 353 58.6
Ca_16573_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 3.1e-94 349.4 330 62.1
Ca_29570_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 3.1e-94 349.4 330 62.1
Mapoly0065s0095 Marchantia polymorpha HOM05D003910 ORTHO05D004622 4.0e-94 349.0 281 68.3
Psat5g087720 Pisum sativum HOM05D003910 ORTHO05D004622 6.9e-94 348.2 247 74.5
TPR.G16047 Trifolium pratense HOM05D003910 ORTHO05D004622 4.5e-93 345.5 350 58.6
Aqoxy3G03785 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 4.9e-92 342.0 355 58.3
PSO782G2793 Papaver somniferum HOM05D003910 ORTHO05D004622 8.4e-92 341.3 251 72.1
SGA_v2.0_scaffold24G10456 Striga asiatica HOM05D003910 ORTHO05D004622 3.5e-90 335.9 312 62.8
MBI14_g37526_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 9.6e-88 327.8 344 57.3
MBI14_g21210_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 2.6e-85 319.7 233 72.5
Oeu059440.1 Olea europaea HOM05D003910 ORTHO05D004622 1.7e-84 317.0 300 61.3
CARHR035900 Cardamine hirsuta HOM05D003910 ORTHO05D004622 9.6e-80 301.2 261 61.7
Carub.0001s3515 Capsella rubella HOM05D003910 ORTHO05D004622 1.8e-78 297.0 262 61.8
Thhalv10012213m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 6.9e-78 295.0 349 50.4
Actinidia29473 Actinidia chinensis HOM05D003910 ORTHO05D004622 1.5e-77 293.9 283 64.3
AT1G44318 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 2.9e-76 289.7 265 60.4
AL1G52270 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 8.4e-76 288.1 272 58.8
BcaB07g33952 Brassica carinata HOM05D003910 ORTHO05D004622 1.9e-75 287.0 263 59.3
Sp1g33510 Schrenkiella parvula HOM05D003910 ORTHO05D004622 3.2e-75 286.2 280 56.4
BraSC36t46049Z Brassica rapa HOM05D003910 ORTHO05D004622 4.6e-74 282.3 317 52.7
BcaC08g42844 Brassica carinata HOM05D003910 ORTHO05D004622 7.9e-74 281.6 263 58.9
C06p00600 Brassica napus HOM05D003910 ORTHO05D004622 7.9e-74 281.6 263 58.9
BolC6t35193H Brassica oleracea HOM05D003910 ORTHO05D004622 7.9e-74 281.6 263 58.9
Psat4g053280 Pisum sativum HOM05D003910 ORTHO05D004622 1.8e-73 280.4 228 67.1
Atru.chr12.1381 Acer truncatum HOM05D003910 ORTHO05D004622 2.3e-73 280.0 214 71.5
A10p07550 Brassica napus HOM05D003910 ORTHO05D004622 3.0e-73 279.6 317 52.1
PSO063G2338 Papaver somniferum HOM05D003910 ORTHO05D004622 2.8e-71 273.1 201 73.1
Actinidia03462 Actinidia chinensis HOM05D003910 ORTHO05D004622 2.4e-70 270.0 184 78.3
MCO01G126 Micromonas commoda HOM05D003910 ORTHO05D004622 2.0e-69 266.9 288 52.4
TPR.G35178 Trifolium pratense HOM05D003910 ORTHO05D004622 1.6e-66 257.3 357 47.6
Cre02.g091050 Chlamydomonas reinhardtii HOM05D003910 ORTHO05D004622 2.5e-64 250.0 266 52.3
Aa31sc95G130 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.5e-61 240.7 179 69.8
Aa31LG6G9390 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.0e-57 228.0 195 61.0
PRCOL_00003407 Prasinoderma coloniale HOM05D003910 ORTHO05D004622 3.9e-57 226.1 236 53.0
Nn3g17592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 6.7e-57 225.3 295 50.5
arahy.Tifrunner.gnm1.ann1.875P1G Arachis hypogaea HOM05D003910 ORTHO05D004622 6.1e-50 202.2 183 61.2
arahy.Tifrunner.gnm1.ann1.YZW1CW Arachis hypogaea HOM05D003910 ORTHO05D004622 4.8e-47 192.6 183 59.0
Psat0s476g0040 Pisum sativum HOM05D003910 ORTHO05D004622 3.2e-43 179.9 147 64.6
arahy.Tifrunner.gnm1.ann1.I497ZX Arachis hypogaea HOM05D003910 ORTHO05D004622 4.2e-43 179.5 173 55.5
arahy.Tifrunner.gnm1.ann1.MAXD3F Arachis hypogaea HOM05D003910 ORTHO05D004622 1.1e-38 164.9 177 53.7
Aa31sc107G70 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.8e-38 164.1 141 64.5
arahy.Tifrunner.gnm1.ann1.KLV74S Arachis hypogaea HOM05D003910 ORTHO05D004622 3.8e-36 156.4 173 52.0
arahy.Tifrunner.gnm1.ann1.FDSF2K Arachis hypogaea HOM05D003910 ORTHO05D004622 3.2e-35 153.3 177 52.0
CBR_g49534 Chara braunii HOM05D003910 ORTHO05D000048 2.3e-33 147.1 228 45.2
Psat4g053240 Pisum sativum HOM05D003910 ORTHO05D004622 2.3e-33 147.1 101 75.2
BcaB06g27098 Brassica carinata HOM05D003910 ORTHO05D004622 5.2e-33 146.0 103 70.9
Haze_27031 Corylus avellana HOM05D003910 ORTHO05D004622 5.7e-32 142.5 247 40.1
BcaB04g19319 Brassica carinata HOM05D003910 ORTHO05D004622 1.4e-30 137.9 100 69.0
BcaB05g22163 Brassica carinata HOM05D003910 ORTHO05D004622 1.2e-29 134.8 100 68.0
Oeu059446.1 Olea europaea HOM05D003910 ORTHO05D004622 2.5e-27 127.1 77 79.2
Lsat_1_v5_gn_8_139480 Lactuca sativa HOM05D003910 ORTHO05D004420 2.5e-19 100.5 87 59.8
TPR.G20499 Trifolium pratense HOM05D003910 ORTHO05D004622 2.5e-19 100.5 111 55.9
SpUn0247_0040 Schrenkiella parvula HOM05D003910 ORTHO05D004622 1.2e-18 98.2 75 65.3
Cfa022049 Carpinus fangiana HOM05D003910 ORTHO05D004622 6.1e-18 95.9 235 32.8
arahy.Tifrunner.gnm1.ann1.ZWJ939 Arachis hypogaea HOM05D000074 ORTHO05D004622 4.9e-15 86.3 193 37.3
Sp6g37550 Schrenkiella parvula HOM05D003910 ORTHO05D004622 1.4e-14 84.7 91 51.6
Psat1g078960 Pisum sativum HOM05D003910 ORTHO05D004622 5.4e-14 82.8 76 57.9
Psat1g079000 Pisum sativum HOM05D003910 ORTHO05D004622 5.4e-14 82.8 76 57.9
arahy.Tifrunner.gnm1.ann1.LHV34C Arachis hypogaea HOM05D003910 ORTHO05D004622 3.9e-12 76.6 76 57.9
ECA233G3734 Erigeron canadensis HOM05D005443 ORTHO05D009021 5.8e-08 62.8 107 43.0
Lsat_1_v5_gn_8_143861 Lactuca sativa HOM05D003910 ORTHO05D004622 7.5e-08 62.4 44 70.5


User provided reference genes

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