Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027284 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000063 4.4e-97 357.8 167 100.0
TAR208G0001 Trochodendron aralioides HOM05D000010 ORTHO05D000063 1.8e-42 176.4 177 50.3
TAR381G0109 Trochodendron aralioides HOM05D000010 ORTHO05D000063 1.8e-42 176.4 177 50.3
Thecc.08G183500 Theobroma cacao HOM05D000010 ORTHO05D000063 2.6e-41 172.6 176 51.7
QL02p033813 Quercus lobata HOM05D000010 ORTHO05D000063 1.9e-39 166.4 174 52.9
GSVIVG01034485001 Vitis vinifera HOM05D000010 ORTHO05D000063 4.6e-38 161.8 173 52.6
Duzib116G0667 Durio zibethinus HOM05D000010 ORTHO05D000063 3.0e-37 159.1 176 48.9
Duzib177G0238 Durio zibethinus HOM05D000010 ORTHO05D000063 3.9e-37 158.7 177 50.3
Potri.013G113100 Populus trichocarpa HOM05D000010 ORTHO05D000063 8.8e-37 157.5 182 51.1
Potri.019G083600 Populus trichocarpa HOM05D000010 ORTHO05D000063 8.8e-37 157.5 183 51.4
MSTRG.22447 Avicennia marina HOM05D000010 ORTHO05D000063 3.3e-36 155.6 178 47.8
TAR628G0820 Trochodendron aralioides HOM05D000010 ORTHO05D000063 2.8e-35 152.5 171 48.5
CiPaw.16G061200 Carya illinoinensis HOM05D000010 ORTHO05D000063 1.5e-33 146.7 189 49.2
Prupe.8G058100 Prunus persica HOM05D000010 ORTHO05D000063 2.6e-33 146.0 169 47.9
Sabra13G0096000 Salix brachista HOM05D000010 ORTHO05D000063 1.0e-32 144.1 182 47.3
Cfa018183 Carpinus fangiana HOM05D000010 ORTHO05D000063 1.3e-32 143.7 188 46.3
Haze_17935 Corylus avellana HOM05D000010 ORTHO05D000063 2.7e-30 136.0 185 43.8
Sabra19G0095000 Salix brachista HOM05D000010 ORTHO05D000063 6.1e-30 134.8 184 45.1
MSTRG.25440 Avicennia marina HOM05D000010 ORTHO05D000063 2.3e-29 132.9 179 42.5
MD10G1048500 Malus domestica HOM05D000010 ORTHO05D000063 2.3e-29 132.9 180 46.7
Aqoxy5G02595 Aquilegia oxysepala HOM05D000010 ORTHO05D000063 3.9e-29 132.1 163 42.9
Cc10_g11470 Coffea canephora HOM05D000010 ORTHO05D000063 3.9e-29 132.1 139 51.1
Ciclev10003255m.g Citrus clementina HOM05D000010 ORTHO05D000063 6.7e-29 131.3 185 44.9
Manes.02G191900 Manihot esculenta HOM05D000010 ORTHO05D000063 6.7e-29 131.3 185 43.8
Cc00_g05780 Coffea canephora HOM05D000010 ORTHO05D000063 1.5e-28 130.2 139 51.8
MD05G1042100 Malus domestica HOM05D000010 ORTHO05D000063 1.5e-28 130.2 179 43.0
Oeu030002.1 Olea europaea HOM05D000010 ORTHO05D000063 6.3e-27 124.8 187 43.9
Gohir.A13G121600 Gossypium hirsutum HOM05D000010 ORTHO05D000063 8.2e-27 124.4 179 43.6
Atru.chr13.1777 Acer truncatum HOM05D000010 ORTHO05D000063 3.1e-26 122.5 181 44.8
Gorai.013G140700 Gossypium raimondii HOM05D000010 ORTHO05D000063 3.1e-26 122.5 179 43.0
Gohir.D13G125600 Gossypium hirsutum HOM05D000010 ORTHO05D000063 5.3e-26 121.7 179 43.0
Phvul.007G089600 Phaseolus vulgaris HOM05D000010 ORTHO05D000063 5.9e-25 118.2 182 37.9
Oeu004767.1 Olea europaea HOM05D000010 ORTHO05D000063 1.3e-24 117.1 183 41.5
Manes.18G100800 Manihot esculenta HOM05D000010 ORTHO05D000063 1.7e-24 116.7 178 43.3
PSO017G4784 Papaver somniferum HOM05D000010 ORTHO05D000063 2.9e-24 115.9 195 39.0
Oeu021014.1 Olea europaea HOM05D000010 ORTHO05D000063 6.5e-24 114.8 136 47.8
PSO063G2549 Papaver somniferum HOM05D000010 ORTHO05D000063 2.5e-23 112.8 196 39.3
Actinidia23330 Actinidia chinensis HOM05D000010 ORTHO05D009770 3.2e-23 112.5 125 56.0
Lj5g0001861 Lotus japonicus HOM05D000010 ORTHO05D000063 4.2e-23 112.1 188 39.9
SGA_v2.0_scaffold118G32474 Striga asiatica HOM05D000010 ORTHO05D000063 1.6e-22 110.2 183 39.3
Glyma.20G175500 Glycine max HOM05D000010 ORTHO05D000063 2.1e-22 109.8 193 38.3
TPR.G8824 Trifolium pratense HOM05D000010 ORTHO05D000063 4.7e-22 108.6 187 35.8
CiPaw.15G081700 Carya illinoinensis HOM05D000010 ORTHO05D000063 6.1e-22 108.2 172 41.9
Oeu004766.1 Olea europaea HOM05D000010 ORTHO05D000063 2.3e-21 106.3 142 45.8
SGA_v2.0_scaffold4612G54510 Striga asiatica HOM05D000010 ORTHO05D000063 5.2e-21 105.1 176 38.1
Lalb_Chr02g0141821 Lupinus albus HOM05D000010 ORTHO05D000063 6.7e-21 104.8 193 39.4
Peaxi162Scf00268g01214 Petunia axillaris HOM05D000010 ORTHO05D000063 8.8e-21 104.4 187 39.0
Peaxi162Scf00083g00319 Petunia axillaris HOM05D000010 ORTHO05D000063 1.1e-20 104.0 198 39.9
Eucgr.F02615 Eucalyptus grandis HOM05D000010 ORTHO05D000063 2.0e-20 103.2 182 36.3
Medtr1g096430 Medicago truncatula HOM05D000010 ORTHO05D000063 2.6e-20 102.8 196 35.7
CAN.G199.16 Capsicum annuum HOM05D000010 ORTHO05D000063 5.7e-20 101.7 193 38.3
Sopen06g023890 Solanum pennellii HOM05D000010 ORTHO05D000063 1.3e-19 100.5 193 36.8
Glyma.10G216400 Glycine max HOM05D000010 ORTHO05D000063 2.2e-19 99.8 195 39.0
Psat6g187480 Pisum sativum HOM05D000010 ORTHO05D000063 2.2e-19 99.8 195 33.3
Solyc06g065410.3 Solanum lycopersicum HOM05D000010 ORTHO05D000063 6.3e-19 98.2 186 37.1
Lalb_Chr21g0305811 Lupinus albus HOM05D000010 ORTHO05D000063 8.2e-19 97.8 199 35.2
TWI32G0618 Tripterygium wilfordii HOM05D000010 ORTHO05D000063 1.1e-18 97.4 174 37.9
SalBow7G0510 Salvia bowleyana HOM05D000010 ORTHO05D000063 3.1e-18 95.9 177 37.3
CSS0007510 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000063 4.1e-18 95.5 107 49.5
AUR62004648 Chenopodium quinoa HOM05D000010 ORTHO05D000063 5.3e-18 95.1 195 37.4
Nitab4.5_0002500g0070 Nicotiana tabacum HOM05D000010 ORTHO05D000063 1.6e-17 93.6 184 37.5
PGSC0003DMG400026079 Solanum tuberosum HOM05D000010 ORTHO05D000063 2.0e-17 93.2 200 36.5
DCAR_032274 Daucus carota HOM05D000010 ORTHO05D000063 1.0e-16 90.9 181 35.9
SalBow6G4851 Salvia bowleyana HOM05D000010 ORTHO05D000063 1.0e-16 90.9 189 37.0
Nitab4.5_0000277g0010 Nicotiana tabacum HOM05D000010 ORTHO05D000063 1.3e-16 90.5 177 38.4
AUR62022690 Chenopodium quinoa HOM05D000010 ORTHO05D000063 2.9e-16 89.4 180 37.2
Oeu030001.1 Olea europaea HOM05D000059 ORTHO05D000128 5.0e-16 88.6 116 45.7
PGR042G2227 Punica granatum HOM05D000010 ORTHO05D000063 6.5e-16 88.2 166 34.9
EL10Ac1g00081 Beta vulgaris HOM05D000010 ORTHO05D000063 1.1e-15 87.4 211 35.5
Cpa.g.c30558 Carica papaya HOM05D000010 ORTHO05D000063 1.9e-15 86.7 187 36.4
BcaC03g15311 Brassica carinata HOM05D000010 ORTHO05D000063 2.5e-15 86.3 198 32.3
C02p29220 Brassica napus HOM05D000010 ORTHO05D000063 2.5e-15 86.3 198 32.3
BolC2t08972H Brassica oleracea HOM05D000010 ORTHO05D000063 2.5e-15 86.3 198 32.3
BcaB03g14914 Brassica carinata HOM05D000010 ORTHO05D000063 2.7e-14 82.8 198 30.8
THA.LOC104800112 Tarenaya hassleriana HOM05D000010 ORTHO05D000063 2.7e-14 82.8 174 35.6
CARHR064750 Cardamine hirsuta HOM05D000010 ORTHO05D000063 3.6e-14 82.4 199 33.7
Nitab4.5_0000303g0090 Nicotiana tabacum HOM05D000010 ORTHO05D000063 8.0e-14 81.3 165 38.8
SGA_v2.0_scaffold149G36597 Striga asiatica HOM05D000010 ORTHO05D000063 8.0e-14 81.3 195 34.9
PGSC0003DMG400000887 Solanum tuberosum HOM05D000010 ORTHO05D000063 3.0e-13 79.3 191 35.6
A02p17570 Brassica napus HOM05D000010 ORTHO05D000063 4.0e-13 79.0 198 30.3
BraA02t06803Z Brassica rapa HOM05D000010 ORTHO05D000063 4.0e-13 79.0 198 30.3
TWI60G1386 Tripterygium wilfordii HOM05D000010 ORTHO05D000063 6.7e-13 78.2 180 37.2
AL2G31540 Arabidopsis lyrata HOM05D000010 ORTHO05D000063 8.8e-13 77.8 199 34.2
BcaB05g24694 Brassica carinata HOM05D000010 ORTHO05D000063 1.2e-12 77.4 146 35.6
A07p38100 Brassica napus HOM05D000010 ORTHO05D000063 1.5e-12 77.0 191 31.4
Sed0009043 Sechium edule HOM05D000010 ORTHO05D000063 1.5e-12 77.0 176 32.4
SGA_v2.0_scaffold25G11072 Striga asiatica HOM05D000010 ORTHO05D000063 3.3e-12 75.9 182 33.5
HPP92_011941 Vanilla planifolia HOM05D000010 ORTHO05D000063 3.3e-12 75.9 139 33.1
BraA07t31375Z Brassica rapa HOM05D000010 ORTHO05D000063 9.7e-12 74.3 191 31.4
Migut.N03347 Erythranthe guttata HOM05D000010 ORTHO05D000063 9.7e-12 74.3 204 31.4
Migut.C01249 Erythranthe guttata HOM05D000010 ORTHO05D000063 1.7e-11 73.6 192 31.8
Thhalv10018853m.g Eutrema salsugineum HOM05D000010 ORTHO05D000063 2.8e-11 72.8 146 37.0
THA.LOC104809743 Tarenaya hassleriana HOM05D000010 ORTHO05D000063 3.7e-11 72.4 188 30.9
Carub.0002s1871 Capsella rubella HOM05D000010 ORTHO05D000063 6.3e-11 71.6 192 31.8
Sp5g27000 Schrenkiella parvula HOM05D000010 ORTHO05D000063 1.1e-10 70.9 194 31.4
Sopen11g009640 Solanum pennellii HOM05D000010 ORTHO05D000063 1.8e-10 70.1 185 36.2
AT1G71930 Arabidopsis thaliana HOM05D000010 ORTHO05D000063 2.4e-10 69.7 190 32.6
BcaC08g46632 Brassica carinata HOM05D000010 ORTHO05D000063 7.0e-10 68.2 194 28.9
C06p46020 Brassica napus HOM05D000010 ORTHO05D000063 7.0e-10 68.2 194 28.9
BolC6t39654H Brassica oleracea HOM05D000010 ORTHO05D000063 7.0e-10 68.2 194 28.9
Solyc11g018660.2 Solanum lycopersicum HOM05D000010 ORTHO05D000063 7.0e-10 68.2 184 35.3
Ah.05g178100 Amaranthus hybridus HOM05D000010 ORTHO05D000063 1.2e-09 67.4 196 30.6
MELO3C000247.2 Cucumis melo HOM05D000010 ORTHO05D000063 2.7e-09 66.2 112 38.4
Lj7C289G2 Lonicera japonica HOM05D000557 ORTHO05D000063 3.5e-09 65.9 85 44.7
CsaV3_7G023750 Cucumis sativus L. HOM05D000010 ORTHO05D000063 5.9e-09 65.1 151 33.1
COL.COLO4_21946 Corchorus olitorius HOM05D000010 ORTHO05D000063 7.7e-09 64.7 152 30.9
CANSAT25G1085 Cannabis sativa HOM05D000010 ORTHO05D000063 1.0e-08 64.3 238 26.9
ClCG09G010570 Citrullus lanatus HOM05D000010 ORTHO05D000063 1.7e-08 63.5 165 32.1
TWI53G0949 Tripterygium wilfordii HOM05D000010 ORTHO05D000063 2.9e-08 62.8 158 29.7
MD02G1134500 Malus domestica HOM05D000010 ORTHO05D000063 3.8e-08 62.4 141 31.2
MD15G1247800 Malus domestica HOM05D000010 ORTHO05D000063 5.0e-08 62.0 162 30.9
Gohir.D11G044700 Gossypium hirsutum HOM05D000010 ORTHO05D000063 6.5e-08 61.6 136 33.1
Gorai.007G048000 Gossypium raimondii HOM05D000010 ORTHO05D000063 6.5e-08 61.6 136 33.1
Aqoxy6G02337 Aquilegia oxysepala HOM05D000010 ORTHO05D000063 8.5e-08 61.2 145 30.3
Actinidia17458 Actinidia chinensis HOM05D000010 ORTHO05D000063 1.5e-07 60.5 136 28.7
Oeu048449.1 Olea europaea HOM05D000010 ORTHO05D000063 1.5e-07 60.5 143 30.8
BolC1t00266H Brassica oleracea HOM05D000010 ORTHO05D000063 1.9e-07 60.1 164 29.3
CiPaw.07G057000 Carya illinoinensis HOM05D000010 ORTHO05D000063 1.9e-07 60.1 141 28.4
Oeu052715.1 Olea europaea HOM05D000010 ORTHO05D000063 1.9e-07 60.1 144 30.6
Prupe.7G166300 Prunus persica HOM05D000010 ORTHO05D000063 1.9e-07 60.1 136 29.4
BcaB03g16592 Brassica carinata HOM05D000010 ORTHO05D000063 2.5e-07 59.7 96 35.4
BraA07t28057Z Brassica rapa HOM05D000010 ORTHO05D000063 2.5e-07 59.7 156 28.8
Hma1.2p1_0743F.1_g211530 Hydrangea macrophylla HOM05D000010 ORTHO05D000063 2.5e-07 59.7 136 30.1
Actinidia22996 Actinidia chinensis HOM05D000010 ORTHO05D000063 3.2e-07 59.3 139 30.2
Haze_03797 Corylus avellana HOM05D000010 ORTHO05D000063 3.2e-07 59.3 140 31.4
Duzib147G0744 Durio zibethinus HOM05D000010 ORTHO05D000063 3.2e-07 59.3 144 30.6
Gohir.A11G041400 Gossypium hirsutum HOM05D000010 ORTHO05D000063 3.2e-07 59.3 136 32.4
Lj2C465T9 Lonicera japonica HOM05D000010 ORTHO05D000063 3.2e-07 59.3 145 31.7
Lj2C473T6 Lonicera japonica HOM05D000010 ORTHO05D000063 3.2e-07 59.3 145 31.7
Oeu039614.1 Olea europaea HOM05D000010 ORTHO05D000063 3.2e-07 59.3 74 45.9
VMungo1215G3251 Vigna mungo HOM05D000010 ORTHO05D000063 4.2e-07 58.9 144 29.9
A07p02580 Brassica napus HOM05D000010 ORTHO05D000063 5.5e-07 58.5 159 29.6
Lalb_Chr09g0321851 Lupinus albus HOM05D000010 ORTHO05D000063 5.5e-07 58.5 136 29.4
vmacro21912 Vaccinium macrocarpon HOM05D000010 ORTHO05D000063 5.5e-07 58.5 96 36.5
Lalb_Chr16g0377571 Lupinus albus HOM05D000010 ORTHO05D000063 7.2e-07 58.2 138 29.0
BcaNung00753 Brassica carinata HOM05D000010 ORTHO05D000063 9.4e-07 57.8 164 28.7
A01p02580 Brassica napus HOM05D000010 ORTHO05D000063 9.4e-07 57.8 164 28.0
C01p02760 Brassica napus HOM05D000010 ORTHO05D000063 9.4e-07 57.8 164 28.7
BraA01t00244Z Brassica rapa HOM05D000010 ORTHO05D000063 9.4e-07 57.8 164 28.0
Lj4C216T3 Lonicera japonica HOM05D000010 ORTHO05D000063 1.6e-06 57.0 96 36.5
Phvul.002G110900 Phaseolus vulgaris HOM05D000010 ORTHO05D000063 1.6e-06 57.0 144 29.2
Thecc.01G021600 Theobroma cacao HOM05D000010 ORTHO05D000063 1.6e-06 57.0 149 31.5
Hma1.2p1_0266F.1_g106860 Hydrangea macrophylla HOM05D000010 ORTHO05D000063 2.1e-06 56.6 149 29.5
QL06p033721 Quercus lobata HOM05D000010 ORTHO05D000063 2.1e-06 56.6 174 28.2
TWI09G1253 Tripterygium wilfordii HOM05D000010 ORTHO05D000063 2.1e-06 56.6 158 28.5
Aa31LG6G13080 Aethionema arabicum HOM05D000010 ORTHO05D000063 2.7e-06 56.2 137 30.7
BcaC06g36364 Brassica carinata HOM05D000010 ORTHO05D000063 2.7e-06 56.2 167 28.1
Aa31LG4G8690 Aethionema arabicum HOM05D000010 ORTHO05D000063 3.6e-06 55.8 145 31.7
arahy.Tifrunner.gnm1.ann1.VERM2V Arachis hypogaea HOM05D000010 ORTHO05D000063 3.6e-06 55.8 138 28.3
Potri.007G014400 Populus trichocarpa HOM05D000010 ORTHO05D000063 3.6e-06 55.8 95 36.8
AL3G51210 Arabidopsis lyrata HOM05D000010 ORTHO05D000063 6.1e-06 55.1 166 27.7
Thhalv10022756m.g Eutrema salsugineum HOM05D000010 ORTHO05D000063 6.1e-06 55.1 181 25.4
Potri.002G178700 Populus trichocarpa HOM05D000010 ORTHO05D000063 6.1e-06 55.1 168 28.6
arahy.Tifrunner.gnm1.ann1.GU1UJS Arachis hypogaea HOM05D000010 ORTHO05D009770 8.0e-06 54.7 191 27.7
MSTRG.23418 Avicennia marina HOM05D000010 ORTHO05D000063 8.0e-06 54.7 154 32.5
Carub.0007s0406 Capsella rubella HOM05D000010 ORTHO05D000063 8.0e-06 54.7 95 36.8
RcHm_v2.0_Chr2g0099671 Rosa chinensis HOM05D000010 ORTHO05D000063 8.0e-06 54.7 157 27.4


User provided reference genes

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