Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 5.2e-205 717.6 396 100.0
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 1.1e-157 560.5 397 81.9
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 4.5e-140 501.9 399 71.7
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 1.8e-136 490.0 390 72.1
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 2.2e-131 473.0 415 63.6
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 5.0e-131 471.9 397 72.5
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 2.5e-130 469.5 390 68.2
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 3.2e-130 469.2 411 70.1
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 3.0e-128 462.6 414 68.8
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 5.1e-128 461.8 412 68.4
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.5e-127 460.3 414 68.8
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 3.1e-125 452.6 416 61.5
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 5.3e-125 451.8 404 68.6
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 1.3e-123 447.2 413 68.8
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 1.7e-123 446.8 420 68.6
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 5.0e-123 445.3 420 64.8
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 7.2e-122 441.4 403 60.0
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 1.6e-121 440.3 398 63.6
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 2.7e-121 439.5 403 66.3
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 3.6e-121 439.1 419 64.0
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 5.2e-120 435.3 412 68.2
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 6.7e-120 434.9 410 66.6
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 8.8e-120 434.5 426 62.7
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 1.1e-119 434.1 424 65.8
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 2.6e-119 433.0 404 66.6
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 7.4e-119 431.4 399 66.7
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 1.3e-118 430.6 404 66.3
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 1.3e-118 430.6 403 60.3
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 2.2e-118 429.9 418 63.6
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 6.3e-118 428.3 418 62.2
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 4.1e-117 425.6 408 64.7
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 5.9e-116 421.8 411 60.1
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 3.6e-113 412.5 396 59.3
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 8.0e-113 411.4 403 58.3
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 3.0e-112 409.5 404 57.9
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 1.4e-109 400.6 422 62.8
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 3.5e-108 396.0 397 61.0
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 4.5e-108 395.6 396 62.1
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 3.8e-107 392.5 432 60.2
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 2.7e-105 386.3 401 60.3
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 2.0e-103 380.2 404 61.4
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 2.6e-103 379.8 411 61.3
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 5.7e-103 378.6 437 50.3
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 4.8e-102 375.6 396 59.3
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 6.3e-102 375.2 399 56.4
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 1.8e-101 373.6 401 54.9
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 4.1e-101 372.5 396 58.6
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 1.6e-100 370.5 427 56.4
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 3.5e-100 369.4 418 60.0
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 1.7e-99 367.1 420 59.5
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 3.8e-99 365.9 421 52.7
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 6.6e-99 365.2 409 52.1
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 2.5e-98 363.2 396 56.3
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 1.6e-97 360.5 424 52.1
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 7.0e-93 345.1 396 60.1
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 3.9e-91 339.3 401 56.6
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 5.0e-91 339.0 414 56.8
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 2.1e-89 333.6 413 56.7
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 1.7e-86 323.9 396 57.6
Nitab4.5_0004399g0090 Nicotiana tabacum HOM05D004237 ORTHO05D005002 7.8e-84 315.1 325 63.7
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 5.6e-82 308.9 405 50.1
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 8.9e-80 301.6 400 51.8
Peaxi162Scf00003g00001 Petunia axillaris HOM05D004237 ORTHO05D005002 2.0e-79 300.4 331 60.7
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 1.7e-78 297.4 399 48.9
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.2e-76 291.2 399 54.4
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.2e-76 291.2 399 54.4
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 1.2e-76 291.2 397 54.7
Lj2P435T33 Lonicera japonica HOM05D004237 ORTHO05D005002 6.0e-76 288.9 272 72.8
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 1.7e-59 234.2 236 56.8
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 2.6e-55 220.3 397 39.3
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 2.2e-54 217.2 479 42.2
AUR62023195 Chenopodium quinoa HOM05D004237 ORTHO05D005002 7.8e-52 208.8 327 43.4
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 1.3e-51 208.0 292 45.5
Glyma.14G069000 Glycine max HOM05D004237 ORTHO05D005002 8.7e-51 205.3 325 49.2
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 6.2e-49 199.1 457 39.8
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 1.5e-42 177.9 277 42.6
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 7.4e-42 175.6 264 44.3
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 1.6e-41 174.5 406 37.2
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 1.6e-41 174.5 262 43.9
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 6.2e-41 172.6 261 41.0
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 8.1e-41 172.2 271 41.7
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.4e-40 171.4 257 42.8
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 4.0e-40 169.9 257 42.4
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 4.0e-40 169.9 283 38.2
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 4.0e-40 169.9 266 42.5
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 6.9e-40 169.1 282 37.9
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 2.6e-39 167.2 276 39.5
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 2.6e-39 167.2 449 36.3
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 4.5e-39 166.4 263 39.9
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 4.5e-39 166.4 251 42.6
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 5.8e-39 166.0 280 37.5
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 7.6e-39 165.6 263 39.5
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 7.6e-39 165.6 270 40.7
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.7e-38 164.5 261 41.4
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 2.9e-38 163.7 275 39.6
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 3.8e-38 163.3 131 58.8
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 3.8e-38 163.3 267 40.4
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 3.8e-38 163.3 266 40.2
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 6.5e-38 162.5 270 40.4
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 6.5e-38 162.5 454 35.2
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 1.4e-37 161.4 459 35.3
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 1.4e-37 161.4 459 35.3
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 1.9e-37 161.0 267 39.3
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 1.9e-37 161.0 279 38.4
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 3.2e-37 160.2 275 38.5
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 4.2e-37 159.8 182 47.3
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 4.2e-37 159.8 184 47.8
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 7.1e-37 159.1 270 39.3
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 7.1e-37 159.1 429 34.5
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 9.3e-37 158.7 268 39.2
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 9.3e-37 158.7 439 36.2
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 9.3e-37 158.7 96 78.1
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 1.2e-36 158.3 410 34.1
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.6e-36 157.9 432 35.2
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 2.1e-36 157.5 437 37.3
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 2.1e-36 157.5 434 36.6
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 2.1e-36 157.5 434 35.3
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 2.1e-36 157.5 149 53.7
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 2.1e-36 157.5 149 53.7
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 2.7e-36 157.1 437 35.9
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 2.7e-36 157.1 314 36.3
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 3.5e-36 156.8 119 60.5
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 4.6e-36 156.4 432 36.3
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 7.9e-36 155.6 276 39.5
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 7.9e-36 155.6 424 37.7
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 1.0e-35 155.2 269 38.3
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 1.8e-35 154.5 230 42.2
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 3.9e-35 153.3 134 52.2
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 3.9e-35 153.3 134 52.2
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 5.1e-35 152.9 465 30.8
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 5.1e-35 152.9 222 41.0
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 6.7e-35 152.5 438 37.9
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.1e-34 151.8 435 34.7
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 1.1e-34 151.8 462 35.5
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 1.5e-34 151.4 450 35.3
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 1.9e-34 151.0 258 39.1
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 1.9e-34 151.0 258 39.1
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 3.3e-34 150.2 449 34.1
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 4.3e-34 149.8 271 36.9
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 5.7e-34 149.4 153 49.0
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 4.8e-33 146.4 397 35.0
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 1.4e-32 144.8 424 30.0
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 4.0e-32 143.3 435 34.3
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 6.9e-32 142.5 432 34.7
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 9.0e-32 142.1 442 35.7
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 3.4e-31 140.2 461 33.2
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 4.5e-31 139.8 259 39.4
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 4.5e-31 139.8 431 33.9
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 5.8e-31 139.4 257 38.1
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 2.2e-30 137.5 123 52.8
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 8.4e-30 135.6 417 30.2
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 1.1e-29 135.2 246 38.6
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 1.1e-29 135.2 436 34.4
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 1.2e-28 131.7 256 37.5
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 6.1e-28 129.4 220 39.5
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 1.8e-27 127.9 160 45.6
RcHm_v2.0_Chr1g0333501 Rosa chinensis HOM05D004237 ORTHO05D005002 3.7e-25 120.2 192 44.8
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 9.0e-24 115.5 440 35.2
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 1.3e-14 85.1 259 31.3
Peaxi162Scf00013g03225 Petunia axillaris HOM05D004237 ORTHO05D005002 3.0e-11 73.9 43 79.1


User provided reference genes

Program Settings