Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027256 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 7.5e-166 587.0 282 100.0
CSS0043425 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.0e-122 443.7 257 84.8
CSS0045284 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 6.7e-122 441.0 257 84.4
CSS0006186 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.0e-106 390.6 257 76.7
CSS0049411 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.5e-105 386.7 231 84.0
CSS0013970 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 4.0e-98 362.1 257 73.2
Rhsim09G0099700 Rhododendron simsii HOM05D003933 ORTHO05D004746 1.1e-97 360.5 260 68.5
vmacro10631 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 1.2e-94 350.5 260 65.8
Nitab4.5_0000569g0090 Nicotiana tabacum HOM05D003933 ORTHO05D004746 4.2e-92 342.0 256 64.5
vmacro10628 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 5.5e-92 341.7 260 64.2
Cc11_g08880 Coffea canephora HOM05D003933 ORTHO05D004746 1.6e-91 340.1 257 62.6
Nitab4.5_0003643g0030 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.6e-91 340.1 255 65.1
Actinidia14952 Actinidia chinensis HOM05D003933 ORTHO05D004746 2.7e-91 339.3 259 65.3
CAN.G107.7 Capsicum annuum HOM05D003933 ORTHO05D004746 2.7e-91 339.3 258 64.7
Potri.005G092000 Populus trichocarpa HOM05D003933 ORTHO05D004746 1.4e-90 337.0 256 64.1
PGSC0003DMG402011550 Solanum tuberosum HOM05D003933 ORTHO05D004746 1.8e-90 336.7 257 64.6
QL05p009967 Quercus lobata HOM05D003933 ORTHO05D004746 3.0e-90 335.9 257 63.8
CiPaw.06G061200 Carya illinoinensis HOM05D003933 ORTHO05D004746 5.2e-90 335.1 257 63.0
Solyc12g088450.3 Solanum lycopersicum HOM05D003933 ORTHO05D004746 1.5e-89 333.6 257 64.2
Duzib277G0001 Durio zibethinus HOM05D003933 ORTHO05D004746 2.0e-89 333.2 255 62.7
DCAR_007284 Daucus carota HOM05D003933 ORTHO05D004746 2.6e-89 332.8 257 62.3
Hma1.2p1_0933F.1_g238310 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 2.6e-89 332.8 273 59.0
Hma1.2p1_2428F.1_g321995 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 2.6e-89 332.8 273 59.0
Lj6A748G52 Lonicera japonica HOM05D003933 ORTHO05D004746 2.6e-89 332.8 257 63.8
Duzib132G1110 Durio zibethinus HOM05D003933 ORTHO05D004746 3.4e-89 332.4 255 62.7
Peaxi162Scf00160g00123 Petunia axillaris HOM05D003933 ORTHO05D004746 9.8e-89 330.9 256 62.9
Cfa008748 Carpinus fangiana HOM05D003933 ORTHO05D004746 2.2e-88 329.7 258 62.0
Haze_11764 Corylus avellana HOM05D003933 ORTHO05D004746 2.2e-88 329.7 258 62.4
RcHm_v2.0_Chr4g0446781 Rosa chinensis HOM05D003933 ORTHO05D004746 3.7e-88 328.9 257 61.5
DCAR_030211 Daucus carota HOM05D003933 ORTHO05D004746 4.8e-88 328.6 257 64.2
TAR629G2222 Trochodendron aralioides HOM05D003933 ORTHO05D004746 4.8e-88 328.6 257 62.6
Atru.chr11.1157 Acer truncatum HOM05D003933 ORTHO05D004746 6.3e-88 328.2 254 61.8
ECA234G4145 Erigeron canadensis HOM05D003933 ORTHO05D004746 6.3e-88 328.2 260 61.9
Gohir.A13G060600 Gossypium hirsutum HOM05D003933 ORTHO05D004746 8.3e-88 327.8 256 62.1
Gorai.013G069800 Gossypium raimondii HOM05D003933 ORTHO05D004746 8.3e-88 327.8 256 62.1
TWI77G0671 Tripterygium wilfordii HOM05D003933 ORTHO05D004746 1.1e-87 327.4 255 60.4
MSTRG.890 Avicennia marina HOM05D003933 ORTHO05D004746 1.8e-87 326.6 257 61.9
Manes.08G053300 Manihot esculenta HOM05D003933 ORTHO05D004746 1.8e-87 326.6 254 62.6
MD13G1004400 Malus domestica HOM05D003933 ORTHO05D004746 2.4e-87 326.2 257 60.3
Ciclev10031732m.g Citrus clementina HOM05D003933 ORTHO05D004746 3.1e-87 325.9 255 62.7
Sopen12g030430 Solanum pennellii HOM05D003933 ORTHO05D004746 4.1e-87 325.5 251 64.1
COL.COLO4_08591 Corchorus olitorius HOM05D003933 ORTHO05D004746 9.1e-87 324.3 257 61.5
Eucgr.J00872 Eucalyptus grandis HOM05D003933 ORTHO05D004746 9.1e-87 324.3 257 60.7
FAN07G0849 Fragaria x ananassa HOM05D003933 ORTHO05D004746 9.1e-87 324.3 255 61.2
PSO063G7666 Papaver somniferum HOM05D003933 ORTHO05D004746 9.1e-87 324.3 258 62.4
Migut.L00761 Erythranthe guttata HOM05D003933 ORTHO05D004746 1.2e-86 323.9 260 60.4
Prupe.1G348200 Prunus persica HOM05D003933 ORTHO05D004746 1.2e-86 323.9 257 59.9
PGR142G4240 Punica granatum HOM05D003933 ORTHO05D004746 1.6e-86 323.6 254 60.2
Duzib248G0690 Durio zibethinus HOM05D003933 ORTHO05D004746 2.0e-86 323.2 252 62.3
Thecc.02G159300 Theobroma cacao HOM05D003933 ORTHO05D004746 2.0e-86 323.2 257 60.7
FvH4_4g36990 Fragaria vesca HOM05D003933 ORTHO05D004746 2.7e-86 322.8 255 60.8
Sabra05G0076300 Salix brachista HOM05D003933 ORTHO05D004746 4.5e-86 322.0 243 64.6
SalBow8G0218 Salvia bowleyana HOM05D003933 ORTHO05D004746 5.9e-86 321.6 257 60.3
SGA_v2.0_scaffold38G15064 Striga asiatica HOM05D003933 ORTHO05D004746 5.9e-86 321.6 258 60.5
ClCG10G012050 Citrullus lanatus HOM05D003933 ORTHO05D004746 1.0e-85 320.9 257 62.6
CANSAT78G0638 Cannabis sativa HOM05D003933 ORTHO05D004746 1.7e-85 320.1 258 58.9
Gohir.D13G061300 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.7e-85 320.1 256 60.9
Cpa.g.sc0.130 Carica papaya HOM05D003933 ORTHO05D004746 3.8e-85 318.9 256 61.7
THA.LOC104800863 Tarenaya hassleriana HOM05D003933 ORTHO05D004746 5.0e-85 318.5 254 60.6
PSO782G2797 Papaver somniferum HOM05D003933 ORTHO05D004746 8.5e-85 317.8 258 61.2
HanXRQChr12g0377651 Helianthus annuus HOM05D003933 ORTHO05D004746 1.1e-84 317.4 260 60.0
Manes.09G017800 Manihot esculenta HOM05D003933 ORTHO05D004746 1.1e-84 317.4 255 62.7
MBI06_g32507_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 2.5e-84 316.2 256 59.8
MELO3C024011.2 Cucumis melo HOM05D003933 ORTHO05D004746 4.2e-84 315.5 257 59.9
Peaxi162Scf00081g01011 Petunia axillaris HOM05D003933 ORTHO05D004746 7.2e-84 314.7 251 59.4
Aqoxy5G00269 Aquilegia oxysepala HOM05D003933 ORTHO05D004746 9.4e-84 314.3 255 59.6
CsaV3_3G031790 Cucumis sativus L. HOM05D003933 ORTHO05D004746 2.7e-83 312.8 257 59.1
AL6G34400 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 4.7e-83 312.0 255 60.8
CARHR190340 Cardamine hirsuta HOM05D003933 ORTHO05D004746 4.7e-83 312.0 255 60.4
Sed0001276 Sechium edule HOM05D003933 ORTHO05D004746 4.7e-83 312.0 258 58.9
Aa31LG3G18300 Aethionema arabicum HOM05D003933 ORTHO05D004746 8.0e-83 311.2 257 59.5
Nitab4.5_0004707g0060 Nicotiana tabacum HOM05D003933 ORTHO05D004746 8.0e-83 311.2 253 58.9
Carub.0006s2098 Capsella rubella HOM05D003933 ORTHO05D004746 1.2e-81 307.4 255 60.4
AUR62032977 Chenopodium quinoa HOM05D003933 ORTHO05D004746 1.2e-81 307.4 257 56.8
AT5G23200 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 1.5e-81 307.0 256 59.8
Lsat_1_v5_gn_4_15060 Lactuca sativa HOM05D003933 ORTHO05D004746 1.5e-81 307.0 263 56.7
arahy.Tifrunner.gnm1.ann1.2XRJ77 Arachis hypogaea HOM05D003933 ORTHO05D004746 2.0e-81 306.6 258 57.0
arahy.Tifrunner.gnm1.ann1.J5HH0A Arachis hypogaea HOM05D003933 ORTHO05D004746 2.6e-81 306.2 258 57.0
Hund08600 Selenicereus undatus HOM05D003933 ORTHO05D004746 5.7e-81 305.1 258 57.4
C07p44350 Brassica napus HOM05D003933 ORTHO05D004746 2.2e-80 303.1 255 58.8
BolC7t44956H Brassica oleracea HOM05D003933 ORTHO05D004746 2.2e-80 303.1 255 58.8
Thhalv10004353m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 2.2e-80 303.1 257 59.5
EL10Ac9g22955 Beta vulgaris HOM05D003933 ORTHO05D004746 4.9e-80 302.0 257 58.4
Nitab4.5_0000934g0120 Nicotiana tabacum HOM05D003933 ORTHO05D004746 4.9e-80 302.0 253 56.9
Glyma.09G282800 Glycine max HOM05D003933 ORTHO05D004746 1.1e-79 300.8 257 55.6
Sp2g23940 Schrenkiella parvula HOM05D003933 ORTHO05D004746 1.4e-79 300.4 257 59.5
Phvul.003G004900 Phaseolus vulgaris HOM05D003933 ORTHO05D004746 1.8e-79 300.1 257 55.6
Medtr1g037570 Medicago truncatula HOM05D003933 ORTHO05D004746 2.4e-79 299.7 256 55.5
BraA03t13757Z Brassica rapa HOM05D003933 ORTHO05D004746 4.1e-79 298.9 257 58.4
Lalb_Chr10g0094951 Lupinus albus HOM05D003933 ORTHO05D004746 4.1e-79 298.9 257 56.8
A03p46330 Brassica napus HOM05D003933 ORTHO05D004746 9.1e-79 297.7 257 58.0
Psat6g135760 Pisum sativum HOM05D003933 ORTHO05D004746 1.6e-78 297.0 257 55.6
TPR.G29790 Trifolium pratense HOM05D003933 ORTHO05D004746 1.6e-78 297.0 256 55.9
CAN.G1054.19 Capsicum annuum HOM05D003933 ORTHO05D004746 2.0e-78 296.6 253 58.1
VMungo0251G2024 Vigna mungo HOM05D003933 ORTHO05D004746 4.5e-78 295.4 254 55.9
Ca_07914_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 5.0e-77 292.0 257 54.9
Zm00001eb248160 Zea mays HOM05D003933 ORTHO05D004746 1.2e-75 287.3 257 53.7
Lj2g0026122 Lotus japonicus HOM05D003933 ORTHO05D004746 2.8e-75 286.2 274 51.1
Thhalv10013838m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 1.4e-74 283.9 251 56.6
Solyc04g078160.4 Solanum lycopersicum HOM05D003933 ORTHO05D004746 1.4e-74 283.9 252 56.3
Os02g0634600 Oryza sativa ssp. japonica HOM05D003933 ORTHO05D004746 5.2e-74 282.0 250 52.8
AL6G18670 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 8.9e-74 281.2 255 54.5
PGSC0003DMG400021516 Solanum tuberosum HOM05D003933 ORTHO05D004746 3.4e-73 279.3 251 56.6
unitig_26.g10014 Utricularia gibba HOM05D003933 ORTHO05D004746 3.4e-73 279.3 241 58.9
CANSAT11G2660 Cannabis sativa HOM05D003933 ORTHO05D004746 7.5e-73 278.1 253 54.2
ATR0618G423 Amborella trichopoda HOM05D003933 ORTHO05D004746 9.8e-73 277.7 262 54.2
AT5G08270 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 1.3e-72 277.3 247 54.7
Sopen04g031790 Solanum pennellii HOM05D003933 ORTHO05D004746 4.9e-72 275.4 252 56.3
MBI06_g23608_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 9.2e-71 271.2 256 53.9
Carub.0006s0715 Capsella rubella HOM05D003933 ORTHO05D004746 2.0e-70 270.0 249 53.4
BcaB08g37269 Brassica carinata HOM05D003933 ORTHO05D004746 1.7e-69 266.9 256 55.9
Glyma.11G100000 Glycine max HOM05D003933 ORTHO05D004746 1.7e-69 266.9 254 53.5
Potri.005G092100 Populus trichocarpa HOM05D003933 ORTHO05D004746 1.7e-69 266.9 235 57.9
VMungo1127G0010 Vigna mungo HOM05D003933 ORTHO05D004746 1.1e-68 264.2 252 54.0
FAN12G2057 Fragaria x ananassa HOM05D003933 ORTHO05D004746 2.5e-68 263.1 243 55.1
Lj3g0003114 Lotus japonicus HOM05D003933 ORTHO05D004746 7.3e-68 261.5 252 53.6
Lj3g0021014 Lotus japonicus HOM05D003933 ORTHO05D004746 7.3e-68 261.5 252 53.6
Gohir.A03G165000 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.6e-67 260.4 255 51.8
Lj3g0017683 Lotus japonicus HOM05D003933 ORTHO05D004746 1.6e-67 260.4 252 53.2
Lj3g0001561 Lotus japonicus HOM05D003933 ORTHO05D004746 2.8e-67 259.6 252 53.2
Lj3g0018867 Lotus japonicus HOM05D003933 ORTHO05D004746 6.2e-67 258.5 252 53.2
CDE08G0738 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 1.8e-66 256.9 251 50.6
Gohir.D02G188200 Gossypium hirsutum HOM05D003933 ORTHO05D004746 3.4e-65 252.7 255 51.0
Gorai.005G210900 Gossypium raimondii HOM05D003933 ORTHO05D004746 2.9e-64 249.6 255 50.6
Lalb_Chr19g0139431 Lupinus albus HOM05D003933 ORTHO05D004746 2.9e-64 249.6 252 50.8
BolC9t59613H Brassica oleracea HOM05D003933 ORTHO05D004746 3.2e-63 246.1 242 53.7
CARHR204870 Cardamine hirsuta HOM05D003933 ORTHO05D004746 4.1e-63 245.7 249 52.6
C09p68670 Brassica napus HOM05D003933 ORTHO05D004746 5.4e-63 245.4 242 53.3
FAN17G2963 Fragaria x ananassa HOM05D003933 ORTHO05D004746 5.4e-63 245.4 185 60.5
arahy.Tifrunner.gnm1.ann1.E3G1QY Arachis hypogaea HOM05D003933 ORTHO05D004746 1.6e-62 243.8 248 48.0
Sp6g34690 Schrenkiella parvula HOM05D003933 ORTHO05D004746 2.0e-62 243.4 260 50.0
BraA10t44888Z Brassica rapa HOM05D003933 ORTHO05D004746 2.7e-62 243.0 242 52.1
arahy.Tifrunner.gnm1.ann1.3AB2AC Arachis hypogaea HOM05D003933 ORTHO05D004746 6.0e-62 241.9 248 47.6
A10p28410 Brassica napus HOM05D003933 ORTHO05D004746 1.3e-61 240.7 237 52.7
SEGI_04055 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 3.9e-61 239.2 235 50.6
Ca_20843_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 5.0e-61 238.8 250 48.8
TPR.G25000 Trifolium pratense HOM05D003933 ORTHO05D004746 1.9e-60 236.9 252 48.8
Medtr4g075120 Medicago truncatula HOM05D003933 ORTHO05D004746 4.3e-60 235.7 253 49.4
Ca_19016_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 7.3e-60 235.0 250 47.6
Psat7g177760 Pisum sativum HOM05D003933 ORTHO05D004746 2.8e-59 233.0 253 47.8
PGSC0003DMG400011553 Solanum tuberosum HOM05D003933 ORTHO05D004746 1.2e-57 227.6 158 66.5
HPP92_008573 Vanilla planifolia HOM05D003933 ORTHO05D004746 9.8e-57 224.6 200 52.5
SMO364G0332 Selaginella moellendorffii HOM05D003933 ORTHO05D004746 1.3e-56 224.2 261 43.7
AagrBONN_evm.TU.Sc2ySwM_117.4016 Anthoceros agrestis HOM05D003933 ORTHO05D004746 8.6e-53 211.5 308 39.9
Mapoly0072s0109 Marchantia polymorpha HOM05D003933 ORTHO05D004746 8.1e-51 204.9 262 42.7
Sc10g0005110 Simmondsia chinensis HOM05D003933 ORTHO05D004746 8.4e-48 194.9 197 52.8
Pp3c10_5850 Physcomitrium patens HOM05D003933 ORTHO05D004746 5.4e-47 192.2 269 39.4
Dinv17619 Davidia involucrata HOM05D003933 ORTHO05D004746 2.8e-43 179.9 115 72.2
Sed0007936 Sechium edule HOM05D003933 ORTHO05D004746 6.2e-43 178.7 173 53.8
GSVIVG01026245001 Vitis vinifera HOM05D003933 ORTHO05D004746 1.3e-37 161.0 245 40.8
CBR_g6576 Chara braunii HOM05D003933 ORTHO05D004746 1.3e-35 154.5 284 33.1
MD16G1003200 Malus domestica HOM05D003933 ORTHO05D004746 1.5e-28 131.0 172 46.5
C06p10890 Brassica napus HOM05D003933 ORTHO05D004746 1.9e-28 130.6 215 39.5
COL.COLO4_20883 Corchorus olitorius HOM05D003933 ORTHO05D004746 1.9e-28 130.6 111 54.1
MCO06G263 Micromonas commoda HOM05D003933 ORTHO05D004746 3.3e-28 129.8 320 29.7
C02p60970 Brassica napus HOM05D003933 ORTHO05D004746 5.6e-28 129.0 215 38.6
Cre02.g086076 Chlamydomonas reinhardtii HOM05D003933 ORTHO05D004746 1.6e-22 110.9 163 33.1
A02p41110 Brassica napus HOM05D003933 ORTHO05D004746 3.5e-22 109.8 68 72.1
BcaC03g18034 Brassica carinata HOM05D003933 ORTHO05D004746 5.8e-17 92.4 181 34.8
SHI31071 Sapria himalayana HOM05D003933 ORTHO05D004746 5.1e-13 79.3 245 30.2
Dinv17620 Davidia involucrata HOM05D003933 ORTHO05D028341 1.4e-10 71.2 53 67.9
BcaC03g13212 Brassica carinata HOM05D003933 ORTHO05D004746 1.4e-07 61.2 90 41.1
BolC2t12147H Brassica oleracea HOM05D003933 ORTHO05D028341 2.7e-06 57.0 41 68.3


User provided reference genes

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