Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 2.6e-86 322.0 160 100.0
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 2.6e-86 322.0 160 100.0
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 6.8e-79 297.4 160 90.6
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 2.0e-75 285.8 158 89.2
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 2.0e-75 285.8 160 88.1
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 2.7e-75 285.4 160 88.1
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 7.8e-75 283.9 155 89.0
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 1.0e-74 283.5 160 87.5
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 1.7e-74 282.7 160 86.9
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 2.3e-74 282.3 154 88.3
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.9e-74 282.0 155 88.4
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 2.9e-74 282.0 160 85.6
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 3.8e-74 281.6 155 87.1
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 3.8e-74 281.6 160 85.6
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 5.0e-74 281.2 154 87.7
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 5.0e-74 281.2 154 87.7
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 6.6e-74 280.8 160 85.0
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 6.6e-74 280.8 160 86.2
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 8.6e-74 280.4 160 85.0
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 8.6e-74 280.4 160 85.0
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 8.6e-74 280.4 160 85.0
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 8.6e-74 280.4 160 85.0
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 8.6e-74 280.4 160 85.0
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 8.6e-74 280.4 160 85.0
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 1.1e-73 280.0 160 84.4
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.9e-73 279.3 155 87.7
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 1.9e-73 279.3 159 86.8
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 3.3e-73 278.5 160 84.4
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 5.6e-73 277.7 158 85.4
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 5.6e-73 277.7 156 85.9
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 5.6e-73 277.7 158 85.4
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 7.3e-73 277.3 154 87.0
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 9.5e-73 276.9 155 86.5
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 9.5e-73 276.9 155 85.2
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 1.2e-72 276.6 160 83.1
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 1.6e-72 276.2 158 84.8
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.6e-72 276.2 157 84.7
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 6.1e-72 274.2 155 84.5
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.0e-71 273.5 158 83.5
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 1.4e-71 273.1 157 80.9
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 1.8e-71 272.7 160 83.1
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 3.1e-71 271.9 154 85.7
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 3.1e-71 271.9 160 82.5
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 4.0e-71 271.6 160 83.1
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 4.0e-71 271.6 154 84.4
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 5.2e-71 271.2 158 83.5
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 8.9e-71 270.4 157 82.8
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 2.6e-70 268.9 157 82.2
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 7.5e-70 267.3 158 82.3
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 9.8e-70 266.9 157 82.8
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 1.7e-69 266.2 158 81.6
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 1.7e-69 266.2 156 83.3
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 3.7e-69 265.0 155 85.2
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 3.7e-69 265.0 155 81.3
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 3.7e-69 265.0 157 82.2
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 6.4e-69 264.2 155 83.9
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 6.4e-69 264.2 156 83.3
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.1e-68 263.5 160 78.1
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 3.2e-68 261.9 155 80.6
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 3.2e-68 261.9 156 82.1
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 1.2e-67 260.0 157 77.7
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 2.0e-67 259.2 151 82.8
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 2.0e-67 259.2 158 77.2
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 3.5e-67 258.5 158 75.9
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 4.6e-67 258.1 154 79.9
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 6.0e-67 257.7 153 80.4
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 7.8e-67 257.3 160 78.1
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 1.3e-66 256.5 160 77.5
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 1.3e-66 256.5 156 80.1
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 1.3e-66 256.5 156 80.1
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 1.3e-66 256.5 157 77.7
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 1.7e-66 256.1 154 80.5
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 3.0e-66 255.4 160 76.9
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 3.9e-66 255.0 153 79.7
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 3.9e-66 255.0 153 79.7
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 5.0e-66 254.6 160 75.6
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 5.0e-66 254.6 160 77.5
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 1.1e-65 253.4 160 76.2
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 1.1e-65 253.4 160 76.2
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 1.1e-65 253.4 153 79.7
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 1.5e-65 253.1 140 87.9
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 1.9e-65 252.7 160 75.6
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 2.5e-65 252.3 160 75.0
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 4.3e-65 251.5 158 77.2
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 4.3e-65 251.5 209 63.6
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 9.5e-65 250.4 158 75.9
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 1.2e-64 250.0 159 76.7
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 1.2e-64 250.0 159 76.7
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 1.2e-64 250.0 156 76.9
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 1.6e-64 249.6 160 74.4
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 2.1e-64 249.2 158 75.3
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 2.8e-64 248.8 159 75.5
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 6.2e-64 247.7 150 78.7
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 6.2e-64 247.7 150 78.7
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 6.2e-64 247.7 150 78.7
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 6.2e-64 247.7 150 78.7
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 6.2e-64 247.7 150 78.7
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 6.2e-64 247.7 150 78.7
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 8.0e-64 247.3 156 76.9
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 1.1e-63 246.9 160 73.1
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 1.4e-63 246.5 160 74.4
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 2.3e-63 245.7 150 78.0
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 3.1e-63 245.4 149 78.5
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 3.1e-63 245.4 149 78.5
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 3.1e-63 245.4 149 78.5
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 3.1e-63 245.4 153 77.1
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 4.0e-63 245.0 160 73.8
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 5.2e-63 244.6 150 77.3
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 1.5e-62 243.0 160 72.5
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 9.8e-62 240.4 155 73.5
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 4.9e-61 238.0 143 79.7
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 5.4e-60 234.6 247 54.7
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 5.4e-60 234.6 156 71.8
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 2.3e-58 229.2 125 88.0
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 5.1e-58 228.0 135 82.2
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 1.9e-57 226.1 144 75.7
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 1.2e-56 223.4 155 71.0
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 1.6e-56 223.0 145 71.0
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 2.1e-56 222.6 145 71.7
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 3.1e-55 218.8 156 67.9
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 1.2e-54 216.9 123 85.4
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 5.8e-54 214.5 208 54.3
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 1.4e-52 209.9 301 43.5
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 1.3e-50 203.4 191 56.5
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 1.2e-48 196.8 123 75.6
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 2.1e-48 196.1 156 60.3
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 3.8e-45 185.3 109 79.8
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 1.1e-44 183.7 144 66.7
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 1.5e-38 163.3 93 88.2
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 3.8e-37 158.7 113 72.6
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 1.7e-34 149.8 133 57.1
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 3.0e-34 149.1 90 78.9
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 4.8e-32 141.7 154 46.8
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 2.0e-30 136.3 149 48.3
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 2.0e-30 136.3 149 47.7
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 8.4e-29 131.0 146 54.8
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 5.4e-28 128.3 157 42.7
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 1.2e-27 127.1 77 76.6
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.6e-27 126.7 123 54.5
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 8.7e-26 120.9 132 47.0
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 2.8e-24 115.9 143 43.4
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 2.4e-23 112.8 76 72.4
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 3.1e-23 112.5 96 59.4
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 3.1e-23 112.5 96 59.4
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 2.0e-22 109.8 65 76.9
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 2.6e-22 109.4 65 75.4
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 5.8e-22 108.2 144 41.7
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 4.9e-21 105.1 64 75.0
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 7.1e-20 101.3 64 71.9
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 7.1e-20 101.3 101 57.4
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 3.5e-19 99.0 78 64.1
PSO063G6118 Papaver somniferum HOM05D004743 ORTHO05D005698 2.2e-13 79.7 157 38.9
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 8.7e-10 67.8 69 52.2
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 2.5e-09 66.2 69 50.7
TPR.G284 Trifolium pratense HOM05D004743 ORTHO05D005698 9.0e-07 57.8 43 69.8
AT3G57900 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 4.5e-06 55.5 96 35.4
ATR0706G141 Amborella trichopoda HOM05D007613 ORTHO05D009344 7.7e-06 54.7 121 28.9


User provided reference genes

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