Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027206 Camellia sinensis var. sinensis HOM05D006364 ORTHO05D007968 2.8e-45 184.9 92 100.0
CSS0032087 Camellia sinensis var. sinensis HOM05D006364 ORTHO05D007968 2.0e-43 178.7 92 97.8
Dinv15615 Davidia involucrata HOM05D006364 ORTHO05D007968 1.1e-41 172.9 92 92.4
QL06p013601 Quercus lobata HOM05D006364 ORTHO05D007968 2.5e-41 171.8 90 93.3
Rhsim02G0000900 Rhododendron simsii HOM05D006364 ORTHO05D007968 3.2e-41 171.4 92 90.2
Actinidia31587 Actinidia chinensis HOM05D006364 ORTHO05D007968 4.2e-41 171.0 92 91.3
Gohir.A02G086100 Gossypium hirsutum HOM05D006364 ORTHO05D007968 4.2e-41 171.0 92 91.3
Gohir.D02G062300 Gossypium hirsutum HOM05D006364 ORTHO05D007968 4.2e-41 171.0 92 91.3
Gorai.005G070100 Gossypium raimondii HOM05D006364 ORTHO05D007968 4.2e-41 171.0 92 91.3
Nn3g21850 Nelumbo nucifera HOM05D006364 ORTHO05D007968 4.2e-41 171.0 92 91.3
Duzib212G0576 Durio zibethinus HOM05D006364 ORTHO05D007968 7.2e-41 170.2 92 91.3
THA.LOC104820323 Tarenaya hassleriana HOM05D006364 ORTHO05D007968 1.6e-40 169.1 92 89.1
GSVIVG01017645001 Vitis vinifera HOM05D006364 ORTHO05D007968 1.6e-40 169.1 92 90.2
Actinidia02518 Actinidia chinensis HOM05D006364 ORTHO05D007968 2.1e-40 168.7 92 90.2
MSTRG.26303 Avicennia marina HOM05D006364 ORTHO05D007968 2.1e-40 168.7 91 89.0
Thecc.04G308800 Theobroma cacao HOM05D006364 ORTHO05D007968 2.7e-40 168.3 92 90.2
Hma1.2p1_0013F.1_g008050 Hydrangea macrophylla HOM05D006364 ORTHO05D007968 6.1e-40 167.2 92 89.1
Nitab4.5_0000152g0370 Nicotiana tabacum HOM05D006364 ORTHO05D007968 6.1e-40 167.2 92 88.0
Nitab4.5_0003130g0060 Nicotiana tabacum HOM05D006364 ORTHO05D007968 6.1e-40 167.2 92 88.0
Cpa.g.sc146.52 Carica papaya HOM05D006364 ORTHO05D007968 1.8e-39 165.6 92 88.0
COL.COLO4_34533 Corchorus olitorius HOM05D006364 ORTHO05D007968 1.8e-39 165.6 92 89.1
Solyc04g071180.3 Solanum lycopersicum HOM05D006364 ORTHO05D007968 1.8e-39 165.6 92 87.0
Sopen04g027130 Solanum pennellii HOM05D006364 ORTHO05D007968 1.8e-39 165.6 92 87.0
PGSC0003DMG400008613 Solanum tuberosum HOM05D006364 ORTHO05D007968 1.8e-39 165.6 92 85.9
Duzib151G1172 Durio zibethinus HOM05D006364 ORTHO05D007968 2.3e-39 165.2 87 92.0
Peaxi162Scf00126g01328 Petunia axillaris HOM05D006364 ORTHO05D007968 3.0e-39 164.9 92 87.0
CDE11G0289 Ceratophyllum demersum HOM05D006364 ORTHO05D007968 3.9e-39 164.5 90 86.7
CsaV3_3G015430 Cucumis sativus L. HOM05D006364 ORTHO05D007968 3.9e-39 164.5 92 85.9
Haze_00814 Corylus avellana HOM05D006364 ORTHO05D007968 5.2e-39 164.1 92 89.1
Migut.B01021 Erythranthe guttata HOM05D006364 ORTHO05D007968 5.2e-39 164.1 91 86.8
Migut.N00017 Erythranthe guttata HOM05D006364 ORTHO05D007968 5.2e-39 164.1 91 86.8
Prupe.1G110000 Prunus persica HOM05D006364 ORTHO05D007968 5.2e-39 164.1 90 88.9
CAN.G689.14 Capsicum annuum HOM05D006364 ORTHO05D007968 6.7e-39 163.7 92 85.9
Cc03_g00390 Coffea canephora HOM05D006364 ORTHO05D007968 6.7e-39 163.7 90 87.8
EL10Ac1g00595 Beta vulgaris HOM05D006364 ORTHO05D007968 8.8e-39 163.3 90 86.7
Glyma.15G136600 Glycine max HOM05D006364 ORTHO05D007968 8.8e-39 163.3 90 88.9
CANSAT78G0762 Cannabis sativa HOM05D006364 ORTHO05D007968 1.1e-38 162.9 92 88.0
CAN.G175.13 Capsicum annuum HOM05D006364 ORTHO05D007968 1.1e-38 162.9 92 84.8
RcHm_v2.0_Chr4g0426541 Rosa chinensis HOM05D006364 ORTHO05D007968 1.1e-38 162.9 90 86.7
Lj6g0013185 Lotus japonicus HOM05D006364 ORTHO05D007968 2.6e-38 161.8 90 88.9
CiPaw.01G113600 Carya illinoinensis HOM05D006364 ORTHO05D007968 3.3e-38 161.4 90 88.9
arahy.Tifrunner.gnm1.ann1.28BCJ9 Arachis hypogaea HOM05D006364 ORTHO05D007968 4.4e-38 161.0 90 86.7
arahy.Tifrunner.gnm1.ann1.8W9CKH Arachis hypogaea HOM05D006364 ORTHO05D007968 4.4e-38 161.0 90 86.7
arahy.Tifrunner.gnm1.ann1.ZVI86Q Arachis hypogaea HOM05D006364 ORTHO05D007968 4.4e-38 161.0 90 86.7
MD16G1140400 Malus domestica HOM05D006364 ORTHO05D007968 4.4e-38 161.0 92 84.8
MELO3C006742.2 Cucumis melo HOM05D006364 ORTHO05D007968 5.7e-38 160.6 92 83.7
HanXRQChr09g0252081 Helianthus annuus HOM05D006364 ORTHO05D007968 5.7e-38 160.6 88 88.6
Glyma.09G031500 Glycine max HOM05D006364 ORTHO05D007968 7.4e-38 160.2 90 86.7
Phvul.006G121400 Phaseolus vulgaris HOM05D006364 ORTHO05D007968 7.4e-38 160.2 90 85.6
Medtr2g032700 Medicago truncatula HOM05D006364 ORTHO05D007968 9.7e-38 159.8 90 83.3
Hund19242 Selenicereus undatus HOM05D006364 ORTHO05D007968 9.7e-38 159.8 92 82.6
Lalb_Chr18g0058441 Lupinus albus HOM05D006364 ORTHO05D007968 1.3e-37 159.5 90 86.7
Sed0012877 Sechium edule HOM05D006364 ORTHO05D007968 1.7e-37 159.1 92 83.7
Potri.010G152100 Populus trichocarpa HOM05D006364 ORTHO05D007968 2.2e-37 158.7 92 84.8
Psat1g163400 Pisum sativum HOM05D006364 ORTHO05D007968 2.8e-37 158.3 90 84.4
FvH4_4g21000 Fragaria vesca HOM05D006364 ORTHO05D007968 6.3e-37 157.1 90 83.3
FAN12G1354 Fragaria x ananassa HOM05D000037 ORTHO05D001684 6.3e-37 157.1 90 83.3
Lj7E712T1 Lonicera japonica HOM05D006364 ORTHO05D007968 6.3e-37 157.1 87 86.2
TPR.G30811 Trifolium pratense HOM05D006364 ORTHO05D007968 6.3e-37 157.1 90 85.6
TWI73G0896 Tripterygium wilfordii HOM05D006364 ORTHO05D007968 8.2e-37 156.8 92 81.5
AUR62014465 Chenopodium quinoa HOM05D000862 ORTHO05D000943 1.1e-36 156.4 84 88.1
DCAR_026961 Daucus carota HOM05D006364 ORTHO05D007968 1.4e-36 156.0 92 80.4
HPP92_017027 Vanilla planifolia HOM05D006364 ORTHO05D007968 1.4e-36 156.0 92 80.4
ECA246G0645 Erigeron canadensis HOM05D006364 ORTHO05D007968 1.8e-36 155.6 88 84.1
AUR62034532 Chenopodium quinoa HOM05D000862 ORTHO05D000943 3.1e-36 154.8 84 86.9
Eucgr.H04093 Eucalyptus grandis HOM05D006364 ORTHO05D007968 3.1e-36 154.8 92 80.4
Sp3g15490 Schrenkiella parvula HOM05D006364 ORTHO05D007968 9.1e-36 153.3 92 80.4
unitig_22.g5765 Utricularia gibba HOM05D006364 ORTHO05D007968 9.1e-36 153.3 92 80.4
Lalb_Chr20g0120331 Lupinus albus HOM05D006364 ORTHO05D007968 1.2e-35 152.9 90 83.3
Zm00001eb028690 Zea mays HOM05D006364 ORTHO05D007968 1.6e-35 152.5 88 83.0
Aa31LG8G4220 Aethionema arabicum HOM05D006364 ORTHO05D007968 2.6e-35 151.8 92 77.2
AL3G30350 Arabidopsis lyrata HOM05D006364 ORTHO05D007968 2.6e-35 151.8 92 80.4
AT3G17300 Arabidopsis thaliana HOM05D006364 ORTHO05D007968 2.6e-35 151.8 92 80.4
Carub.0003s1701 Capsella rubella HOM05D006364 ORTHO05D007968 2.6e-35 151.8 92 80.4
Potri.008G100400 Populus trichocarpa HOM05D006364 ORTHO05D007968 2.6e-35 151.8 86 83.7
Aqoxy2G02602 Aquilegia oxysepala HOM05D006364 ORTHO05D007968 3.5e-35 151.4 92 81.5
BcaB04g18937 Brassica carinata HOM05D006364 ORTHO05D007968 5.9e-35 150.6 92 79.3
BcaB04g20848 Brassica carinata HOM05D006364 ORTHO05D007968 5.9e-35 150.6 92 79.3
A03p40140 Brassica napus HOM05D006364 ORTHO05D007968 5.9e-35 150.6 92 79.3
BraA03t13164Z Brassica rapa HOM05D006364 ORTHO05D007968 5.9e-35 150.6 92 79.3
Thhalv10021841m.g Eutrema salsugineum HOM05D006364 ORTHO05D007968 5.9e-35 150.6 92 79.3
Zm00001eb418900 Zea mays HOM05D006364 ORTHO05D007968 7.7e-35 150.2 88 81.8
PGR004G1259 Punica granatum HOM05D006364 ORTHO05D007968 1.0e-34 149.8 92 78.3
BcaC01g03770 Brassica carinata HOM05D006364 ORTHO05D007968 1.3e-34 149.4 92 78.3
Os12g0566100 Oryza sativa ssp. japonica HOM05D006364 ORTHO05D007968 1.7e-34 149.1 89 78.7
BcaC01g03776 Brassica carinata HOM05D006364 ORTHO05D007968 2.2e-34 148.7 92 78.3
C03p48710 Brassica napus HOM05D006364 ORTHO05D007968 2.2e-34 148.7 92 78.3
C03p48760 Brassica napus HOM05D006364 ORTHO05D007968 2.2e-34 148.7 92 78.3
BolC3t17152H Brassica oleracea HOM05D006364 ORTHO05D007968 2.2e-34 148.7 92 78.3
BcaC09g48691 Brassica carinata HOM05D006364 ORTHO05D007968 2.9e-34 148.3 92 78.3
C01p46890 Brassica napus HOM05D006364 ORTHO05D007968 2.9e-34 148.3 92 78.3
BolC1t04661H Brassica oleracea HOM05D006364 ORTHO05D007968 2.9e-34 148.3 92 78.3
Rhsim04G0245400 Rhododendron simsii HOM05D006364 ORTHO05D007968 3.8e-34 147.9 135 60.0
CARHR092600 Cardamine hirsuta HOM05D006364 ORTHO05D007968 1.5e-33 146.0 88 79.5
A01p37010 Brassica napus HOM05D006364 ORTHO05D007968 9.4e-33 143.3 86 80.2
BraA01t03762Z Brassica rapa HOM05D006364 ORTHO05D007968 9.4e-33 143.3 86 80.2
SHI21779 Sapria himalayana HOM05D006364 ORTHO05D007968 2.1e-32 142.1 82 84.1
TWI09G0430 Tripterygium wilfordii HOM05D006364 ORTHO05D007968 2.1e-32 142.1 89 79.8
PSO210G6302 Papaver somniferum HOM05D006364 ORTHO05D007968 1.8e-31 139.0 92 75.0
PSO761G0417 Papaver somniferum HOM05D006364 ORTHO05D007968 1.8e-31 139.0 92 75.0
Manes.03G210000 Manihot esculenta HOM05D006364 ORTHO05D007968 2.3e-31 138.7 92 79.3
AUR62036805 Chenopodium quinoa HOM05D000862 ORTHO05D000943 8.8e-31 136.7 120 60.8
ClCG05G006780 Citrullus lanatus HOM05D006364 ORTHO05D007968 2.8e-29 131.7 144 54.9
Zm00001eb137950 Zea mays HOM05D006364 ORTHO05D007968 8.2e-29 130.2 119 58.0
Sc07g0002970 Simmondsia chinensis HOM05D006364 ORTHO05D007968 1.2e-27 126.3 66 90.9
Dinv29542 Davidia involucrata HOM05D006364 ORTHO05D007968 2.0e-27 125.6 66 92.4
SalBow4G1453 Salvia bowleyana HOM05D006364 ORTHO05D007968 2.7e-27 125.2 91 70.3
Lsat_1_v5_gn_6_117381 Lactuca sativa HOM05D006364 ORTHO05D007968 5.9e-27 124.0 73 80.8
MBI18_g09661_MAGBIO Magnolia biondii HOM05D006364 ORTHO05D007968 1.3e-26 122.9 119 61.3
Ah.05g176740 Amaranthus hybridus HOM05D006364 ORTHO05D007968 1.1e-25 119.8 66 86.4
Sed0013937 Sechium edule HOM05D006364 ORTHO05D007968 7.2e-25 117.1 66 84.8
Zm00001eb224320 Zea mays HOM05D006364 ORTHO05D007968 4.0e-23 111.3 65 81.5
SalBow6G4934 Salvia bowleyana HOM05D006364 ORTHO05D007968 1.1e-20 103.2 95 55.8
Hund17201 Selenicereus undatus HOM05D000862 ORTHO05D000943 1.8e-20 102.4 89 62.9
Zm00001eb193610 Zea mays HOM05D006364 ORTHO05D007968 1.2e-19 99.8 60 78.3
SGA_v2.0_scaffold449G51796 Striga asiatica HOM05D006364 ORTHO05D007968 1.6e-19 99.4 94 59.6
EL10Ac3g06351 Beta vulgaris HOM05D006364 ORTHO05D007968 5.9e-19 97.4 61 72.1
Pp3c26_11720 Physcomitrium patens HOM05D006364 ORTHO05D007968 2.1e-16 89.0 86 47.7
vmacro07987 Vaccinium macrocarpon HOM05D006364 ORTHO05D007968 3.6e-16 88.2 107 49.5
BraA01t03642Z Brassica rapa HOM05D006364 ORTHO05D007968 8.8e-15 83.6 72 62.5
AagrBONN_evm.TU.Sc2ySwM_368.2196 Anthoceros agrestis HOM05D006364 ORTHO05D007968 1.5e-14 82.8 84 46.4
SMO196G0146 Selaginella moellendorffii HOM05D006364 ORTHO05D007968 3.4e-14 81.6 69 52.2
A01p35610 Brassica napus HOM05D006364 ORTHO05D007968 1.3e-13 79.7 72 59.7
Cfa015704 Carpinus fangiana HOM05D006364 ORTHO05D007968 3.7e-13 78.2 66 65.2
MD13G1146500 Malus domestica HOM05D006364 ORTHO05D007968 5.4e-12 74.3 56 69.6
SalBow3G2548 Salvia bowleyana HOM05D006364 ORTHO05D007968 1.6e-08 62.8 52 53.8
MCO05G593 Micromonas commoda HOM05D006364 ORTHO05D007968 8.0e-08 60.5 71 40.8
Cre14.g626250 Chlamydomonas reinhardtii HOM05D006364 ORTHO05D007968 1.0e-07 60.1 64 45.3
Actinidia07522 Actinidia chinensis HOM05D006364 ORTHO05D007968 1.4e-07 59.7 56 58.9
Ciclev10027020m.g Citrus clementina HOM05D006364 ORTHO05D007968 1.2e-06 56.6 137 35.0


User provided reference genes

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