Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027204 Camellia sinensis var. sinensis HOM05D000012 ORTHO05D017217 5.0e-76 287.7 149 100.0
CSS0006532 Camellia sinensis var. sinensis HOM05D000012 ORTHO05D017217 6.2e-42 174.5 139 71.9
CSS0049811 Camellia sinensis var. sinensis HOM05D000012 ORTHO05D017217 3.2e-30 135.6 87 80.5
Actinidia01105 Actinidia chinensis HOM05D000012 ORTHO05D017217 4.7e-26 121.7 88 72.7
Atru.chr8.2213 Acer truncatum HOM05D000012 ORTHO05D003972 5.4e-22 108.2 95 62.1
Prupe.6G272600 Prunus persica HOM05D000012 ORTHO05D003972 7.1e-22 107.8 87 63.2
QL07p035973 Quercus lobata HOM05D000012 ORTHO05D003972 4.3e-19 98.6 80 63.8
CANSAT35G1456 Cannabis sativa HOM05D000012 ORTHO05D003972 5.6e-19 98.2 94 56.4
Actinidia01104 Actinidia chinensis HOM05D000012 ORTHO05D003972 1.6e-18 96.7 88 59.1
Dinv37071 Davidia involucrata HOM05D001221 ORTHO05D009285 1.6e-18 96.7 86 61.6
MD04G1148300 Malus domestica HOM05D000012 ORTHO05D003972 3.6e-18 95.5 84 57.1
Cc06_g01560 Coffea canephora HOM05D000012 ORTHO05D003972 1.1e-17 94.0 92 53.3
Migut.J00191 Erythranthe guttata HOM05D000012 ORTHO05D003972 1.4e-17 93.6 98 49.0
QL07p035967 Quercus lobata HOM05D000012 ORTHO05D003972 1.8e-17 93.2 71 63.4
SalBow5G4030 Salvia bowleyana HOM05D000012 ORTHO05D003972 3.1e-17 92.4 87 58.6
Prupe.6G272500 Prunus persica HOM05D000012 ORTHO05D003972 5.3e-17 91.7 84 56.0
Nn2g11409 Nelumbo nucifera HOM05D000012 ORTHO05D003972 1.2e-16 90.5 88 53.4
Lj3A127T4 Lonicera japonica HOM05D000012 ORTHO05D003972 4.5e-16 88.6 87 54.0
Cfa013509 Carpinus fangiana HOM05D000012 ORTHO05D003972 1.7e-15 86.7 91 58.2
Ciclev10013636m.g Citrus clementina HOM05D000012 ORTHO05D003972 2.2e-15 86.3 73 56.2
Lj2A78G30 Lonicera japonica HOM05D000012 ORTHO05D003972 2.2e-15 86.3 87 52.9
QL07p035998 Quercus lobata HOM05D000012 ORTHO05D003972 2.2e-15 86.3 67 61.2
AL4G35100 Arabidopsis lyrata HOM05D000012 ORTHO05D003972 3.8e-15 85.5 88 55.7
CANSAT35G1359 Cannabis sativa HOM05D000012 ORTHO05D003972 3.8e-15 85.5 86 53.5
QL07p035993 Quercus lobata HOM05D000012 ORTHO05D003972 6.4e-15 84.7 80 56.2
Ciclev10013488m.g Citrus clementina HOM05D000012 ORTHO05D003972 8.4e-15 84.3 71 57.7
Thhalv10016530m.g Eutrema salsugineum HOM05D000012 ORTHO05D003972 8.4e-15 84.3 88 55.7
Carub.0004s2007 Capsella rubella HOM05D000012 ORTHO05D003972 1.1e-14 84.0 88 54.5
CARHR132680 Cardamine hirsuta HOM05D000012 ORTHO05D003972 3.2e-14 82.4 88 54.5
Oeu030521.1 Olea europaea HOM05D000012 ORTHO05D003972 3.2e-14 82.4 90 55.6
A05p07940 Brassica napus HOM05D000012 ORTHO05D003972 4.2e-14 82.0 86 53.5
BraA05t19759Z Brassica rapa HOM05D000012 ORTHO05D003972 4.2e-14 82.0 71 57.7
HanXRQChr08g0220531 Helianthus annuus HOM05D000012 ORTHO05D003972 4.2e-14 82.0 70 54.3
Lsat_1_v5_gn_8_99941 Lactuca sativa HOM05D000012 ORTHO05D003972 4.2e-14 82.0 70 54.3
BcaC02g11953 Brassica carinata HOM05D000012 ORTHO05D003972 5.4e-14 81.6 88 52.3
BolC4t22566H Brassica oleracea HOM05D000012 ORTHO05D003972 5.4e-14 81.6 88 52.3
BcaB02g09218 Brassica carinata HOM05D000012 ORTHO05D003972 1.2e-13 80.5 73 56.2
DCAR_018721 Daucus carota HOM05D000012 ORTHO05D003972 1.2e-13 80.5 71 54.9
ECA236G1283 Erigeron canadensis HOM05D000012 ORTHO05D000567 1.6e-13 80.1 114 43.9
AUR62021861 Chenopodium quinoa HOM05D000012 ORTHO05D003972 2.7e-13 79.3 70 52.9
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 2.7e-13 79.3 71 53.5
EL10Ac8g20188 Beta vulgaris HOM05D000012 ORTHO05D003972 4.6e-13 78.6 70 51.4
Duzib093G0916 Durio zibethinus HOM05D000012 ORTHO05D003972 1.3e-12 77.0 86 50.0
Migut.J00198 Erythranthe guttata HOM05D000012 ORTHO05D003972 1.3e-12 77.0 85 49.4
C04p09590 Brassica napus HOM05D000012 ORTHO05D003972 3.0e-12 75.9 87 51.7
Lsat_1_v5_gn_2_3761 Lactuca sativa HOM05D000012 ORTHO05D003972 3.0e-12 75.9 70 54.3
TAR636G0546 Trochodendron aralioides HOM05D000012 ORTHO05D003972 3.0e-12 75.9 74 59.5
Cpa.g.sc163.8 Carica papaya HOM05D000012 ORTHO05D003972 3.9e-12 75.5 88 46.6
Cc00_g17610 Coffea canephora HOM05D000012 ORTHO05D017217 3.9e-12 75.5 75 52.0
Cc11_g06880 Coffea canephora HOM05D000012 ORTHO05D003972 3.9e-12 75.5 87 51.7
Aa31sc236G20 Aethionema arabicum HOM05D000012 ORTHO05D003972 5.1e-12 75.1 86 52.3
QL07p035978 Quercus lobata HOM05D000012 ORTHO05D003972 8.7e-12 74.3 76 55.3
CiPaw.10G155000 Carya illinoinensis HOM05D000012 ORTHO05D003972 1.1e-11 73.9 87 48.3
HanXRQChr08g0211441 Helianthus annuus HOM05D000012 ORTHO05D003972 1.1e-11 73.9 70 51.4
THA.LOC104806521 Tarenaya hassleriana HOM05D000012 ORTHO05D003972 1.1e-11 73.9 72 58.3
Cfa017238 Carpinus fangiana HOM05D000012 ORTHO05D003972 3.3e-11 72.4 91 51.6
AUR62012791 Chenopodium quinoa HOM05D000012 ORTHO05D003972 4.3e-11 72.0 76 48.7
AUR62012793 Chenopodium quinoa HOM05D000012 ORTHO05D003972 4.3e-11 72.0 76 48.7
Cc11_g06890 Coffea canephora HOM05D000012 ORTHO05D003972 4.3e-11 72.0 87 47.1
SGA_v2.0_scaffold85G26754 Striga asiatica HOM05D001221 ORTHO05D009285 5.6e-11 71.6 75 50.7
HanXRQChr04g0102001 Helianthus annuus HOM05D000012 ORTHO05D003972 7.4e-11 71.2 70 51.4
AUR62012790 Chenopodium quinoa HOM05D000012 ORTHO05D003972 1.3e-10 70.5 66 48.5
AUR62021863 Chenopodium quinoa HOM05D000012 ORTHO05D003972 1.3e-10 70.5 66 48.5
SalBow1G4398 Salvia bowleyana HOM05D000012 ORTHO05D003972 1.3e-10 70.5 84 48.8
Sp4g20420 Schrenkiella parvula HOM05D000012 ORTHO05D003972 1.3e-10 70.5 72 56.9
AT2G38100 Arabidopsis thaliana HOM05D000012 ORTHO05D003972 1.6e-10 70.1 72 56.9
SalBow5G4197 Salvia bowleyana HOM05D000012 ORTHO05D003972 2.1e-10 69.7 72 54.2
SalBow5G5134 Salvia bowleyana HOM05D000012 ORTHO05D003972 2.1e-10 69.7 72 54.2
AUR62021862 Chenopodium quinoa HOM05D000012 ORTHO05D003972 3.7e-10 68.9 79 43.0
unitig_8.g3230 Utricularia gibba HOM05D007005 ORTHO05D008799 3.7e-10 68.9 71 52.1
RcHm_v2.0_Chr5g0061221 Rosa chinensis HOM05D000012 ORTHO05D017217 4.8e-10 68.6 62 54.8
Cc11_g10430 Coffea canephora HOM05D000012 ORTHO05D003972 8.1e-10 67.8 76 52.6
CANSAT35G0460 Cannabis sativa HOM05D000012 ORTHO05D003972 1.4e-09 67.0 67 44.8
SalBow5G4867 Salvia bowleyana HOM05D000012 ORTHO05D003972 1.8e-09 66.6 70 47.1
Haze_20965 Corylus avellana HOM05D000012 ORTHO05D003972 5.3e-09 65.1 79 49.4
Migut.J00193 Erythranthe guttata HOM05D000012 ORTHO05D003972 2.0e-08 63.2 74 44.6
Migut.J00197 Erythranthe guttata HOM05D000012 ORTHO05D003972 2.0e-08 63.2 70 51.4
SalBow5G4000 Salvia bowleyana HOM05D000012 ORTHO05D003972 2.0e-08 63.2 70 47.1
Actinidia18445 Actinidia chinensis HOM05D000012 ORTHO05D003972 4.5e-08 62.0 89 39.3
SalBow5G5066 Salvia bowleyana HOM05D000012 ORTHO05D003972 4.5e-08 62.0 71 42.3
SalBow5G2554 Salvia bowleyana HOM05D000012 ORTHO05D003972 5.8e-08 61.6 71 42.3
SalBow5G2834 Salvia bowleyana HOM05D000012 ORTHO05D003972 5.8e-08 61.6 71 42.3
SalBow5G4460 Salvia bowleyana HOM05D000012 ORTHO05D003972 5.8e-08 61.6 71 42.3
Nitab4.5_0001264g0210 Nicotiana tabacum HOM05D000012 ORTHO05D003972 7.6e-08 61.2 86 41.9
SalBow5G0084 Salvia bowleyana HOM05D000103 ORTHO05D017217 9.9e-08 60.8 81 42.0
CANSAT35G0501 Cannabis sativa HOM05D000012 ORTHO05D003972 1.7e-07 60.1 71 46.5
FAN11G0886 Fragaria x ananassa HOM05D000012 ORTHO05D003972 2.2e-07 59.7 71 43.7
FAN14G2705 Fragaria x ananassa HOM05D000012 ORTHO05D017217 2.2e-07 59.7 73 42.5
FAN21G1126 Fragaria x ananassa HOM05D000012 ORTHO05D003972 2.2e-07 59.7 71 43.7
SalBow5G4034 Salvia bowleyana HOM05D000012 ORTHO05D003972 2.2e-07 59.7 84 39.3
Prupe.6G272400 Prunus persica HOM05D000012 ORTHO05D003972 2.9e-07 59.3 73 42.5
FvH4_3g33690 Fragaria vesca HOM05D000012 ORTHO05D003972 4.9e-07 58.5 66 43.9
Haze_20968 Corylus avellana HOM05D000012 ORTHO05D003972 6.4e-07 58.2 74 52.7
DCAR_010584 Daucus carota HOM05D000012 ORTHO05D003972 6.4e-07 58.2 54 53.7
FvH4_6g11880 Fragaria vesca HOM05D000012 ORTHO05D003972 6.4e-07 58.2 67 43.3
FAN14G2604 Fragaria x ananassa HOM05D000012 ORTHO05D003972 6.4e-07 58.2 67 43.3
FAN14G4999 Fragaria x ananassa HOM05D000012 ORTHO05D003972 6.4e-07 58.2 67 43.3
FAN02G1045 Fragaria x ananassa HOM05D000012 ORTHO05D003972 1.1e-06 57.4 67 43.3
Nitab4.5_0002650g0020 Nicotiana tabacum HOM05D000012 ORTHO05D003972 1.1e-06 57.4 68 47.1
FvH4_6g11890 Fragaria vesca HOM05D000012 ORTHO05D003972 1.9e-06 56.6 65 40.0
SalBow5G2865 Salvia bowleyana HOM05D000012 ORTHO05D003972 1.9e-06 56.6 84 38.1
DCAR_010585 Daucus carota HOM05D000012 ORTHO05D003972 2.4e-06 56.2 51 52.9
EL10Ac8g20185 Beta vulgaris HOM05D000012 ORTHO05D003972 3.2e-06 55.8 76 42.1
EL10Ac8g20184 Beta vulgaris HOM05D000012 ORTHO05D003972 7.1e-06 54.7 63 44.4
CANSAT35G0684 Cannabis sativa HOM05D000012 ORTHO05D003972 9.3e-06 54.3 71 45.1


User provided reference genes

Program Settings