Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027196 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 9.5e-50 199.9 103 100.0
Actinidia34979 Actinidia chinensis HOM05D006304 ORTHO05D008584 1.0e-27 126.7 81 76.5
Rhsim12G0159100 Rhododendron simsii HOM05D006304 ORTHO05D008584 4.3e-26 121.3 81 74.1
vmacro16566 Vaccinium macrocarpon HOM05D006304 ORTHO05D008584 5.6e-26 120.9 81 74.1
Actinidia19056 Actinidia chinensis HOM05D006304 ORTHO05D008584 4.7e-25 117.9 81 72.8
Glyma.17G097500 Glycine max HOM05D006304 ORTHO05D008584 2.6e-23 112.1 81 69.1
Lalb_Chr12g0196731 Lupinus albus HOM05D006304 ORTHO05D008584 2.6e-23 112.1 81 67.9
VMungo1215G2961 Vigna mungo HOM05D006304 ORTHO05D008584 4.4e-23 111.3 81 67.9
Prupe.5G187100 Prunus persica HOM05D006304 ORTHO05D008584 7.6e-23 110.5 84 67.9
Ciclev10019215m.g Citrus clementina HOM05D006304 ORTHO05D008584 9.9e-23 110.2 83 68.7
Glyma.05G029400 Glycine max HOM05D006304 ORTHO05D008584 1.7e-22 109.4 81 65.4
Lj4g0004911 Lotus japonicus HOM05D006304 ORTHO05D008584 1.7e-22 109.4 81 64.2
Oeu048746.1 Olea europaea HOM05D006304 ORTHO05D008584 1.7e-22 109.4 93 64.5
Phvul.003G192300 Phaseolus vulgaris HOM05D006304 ORTHO05D008584 2.2e-22 109.0 81 66.7
CiPaw.11G039300 Carya illinoinensis HOM05D006304 ORTHO05D008584 2.9e-22 108.6 84 66.7
Cfa018983 Carpinus fangiana HOM05D006304 ORTHO05D008584 6.4e-22 107.5 83 69.9
ClCG01G014430 Citrullus lanatus HOM05D006304 ORTHO05D008584 6.4e-22 107.5 84 66.7
Migut.I00131 Erythranthe guttata HOM05D006304 ORTHO05D008584 6.4e-22 107.5 81 60.5
AUR62008366 Chenopodium quinoa HOM05D006304 ORTHO05D008584 8.4e-22 107.1 81 67.9
Haze_07372 Corylus avellana HOM05D006304 ORTHO05D008584 1.1e-21 106.7 83 69.9
AUR62021733 Chenopodium quinoa HOM05D006304 ORTHO05D008584 1.9e-21 105.9 81 66.7
MD06G1188800 Malus domestica HOM05D006304 ORTHO05D008584 2.4e-21 105.5 83 65.1
RcHm_v2.0_Chr7g0180671 Rosa chinensis HOM05D006304 ORTHO05D008584 5.4e-21 104.4 84 63.1
Hund09367 Selenicereus undatus HOM05D006304 ORTHO05D008584 5.4e-21 104.4 83 69.9
arahy.Tifrunner.gnm1.ann1.E16Z9R Arachis hypogaea HOM05D006304 ORTHO05D008584 7.1e-21 104.0 81 65.4
arahy.Tifrunner.gnm1.ann1.YQHF2A Arachis hypogaea HOM05D006304 ORTHO05D008584 7.1e-21 104.0 81 65.4
Oeu006477.2 Olea europaea HOM05D006304 ORTHO05D008584 1.2e-20 103.2 93 62.4
CsaV3_1G007890 Cucumis sativus L. HOM05D006304 ORTHO05D008584 1.6e-20 102.8 84 65.5
QL10p015689 Quercus lobata HOM05D006304 ORTHO05D008584 1.6e-20 102.8 85 67.1
TWI60G1649 Tripterygium wilfordii HOM05D006304 ORTHO05D008584 2.1e-20 102.4 86 66.3
FvH4_5g15410 Fragaria vesca HOM05D006304 ORTHO05D008584 2.7e-20 102.1 84 63.1
FAN18G3228 Fragaria x ananassa HOM05D006304 ORTHO05D008584 2.7e-20 102.1 84 63.1
TPR.G38415 Trifolium pratense HOM05D006304 ORTHO05D008584 6.0e-20 100.9 82 67.1
GSVIVG01008051001 Vitis vinifera HOM05D006304 ORTHO05D008584 7.8e-20 100.5 82 65.9
Lj5A115T69 Lonicera japonica HOM05D006304 ORTHO05D008584 1.0e-19 100.1 85 62.4
Eucgr.B00434 Eucalyptus grandis HOM05D006304 ORTHO05D008584 1.3e-19 99.8 82 67.1
Solyc06g071040.4 Solanum lycopersicum HOM05D006304 ORTHO05D008584 1.3e-19 99.8 90 58.9
Sopen06g027340 Solanum pennellii HOM05D006304 ORTHO05D008584 1.3e-19 99.8 90 58.9
MD14G1195600 Malus domestica HOM05D006304 ORTHO05D008584 1.7e-19 99.4 86 61.6
Potri.015G064600 Populus trichocarpa HOM05D006304 ORTHO05D008584 1.7e-19 99.4 84 63.1
MELO3C002204.2 Cucumis melo HOM05D006304 ORTHO05D008584 2.3e-19 99.0 85 61.2
HanXRQChr02g0045271 Helianthus annuus HOM05D006304 ORTHO05D008584 2.3e-19 99.0 83 65.1
Gorai.008G191000 Gossypium raimondii HOM05D006304 ORTHO05D008584 3.0e-19 98.6 82 63.4
Peaxi162Scf00013g00025 Petunia axillaris HOM05D006304 ORTHO05D008584 3.0e-19 98.6 90 61.1
Medtr4g107890 Medicago truncatula HOM05D006304 ORTHO05D008584 3.9e-19 98.2 82 64.6
Dinv19922 Davidia involucrata HOM05D006304 ORTHO05D008584 6.6e-19 97.4 100 56.0
Cpa.g.sc17.206 Carica papaya HOM05D006304 ORTHO05D008584 8.7e-19 97.1 82 59.8
Nitab4.5_0000269g0180 Nicotiana tabacum HOM05D006304 ORTHO05D008584 8.7e-19 97.1 89 60.7
Sc10g0009990 Simmondsia chinensis HOM05D006304 ORTHO05D008584 8.7e-19 97.1 78 66.7
Duzib205G0644 Durio zibethinus HOM05D006304 ORTHO05D008584 1.1e-18 96.7 82 63.4
SalBow5G3794 Salvia bowleyana HOM05D006304 ORTHO05D008584 1.1e-18 96.7 82 58.5
Gohir.D12G178452 Gossypium hirsutum HOM05D006304 ORTHO05D008584 1.5e-18 96.3 82 62.2
Sed0028137 Sechium edule HOM05D006304 ORTHO05D008584 1.5e-18 96.3 77 64.9
Ah.11g048730 Amaranthus hybridus HOM05D006304 ORTHO05D008584 1.9e-18 95.9 82 61.0
DCAR_021535 Daucus carota HOM05D006304 ORTHO05D008584 2.5e-18 95.5 95 58.9
SGA_v2.0_scaffold56G20049 Striga asiatica HOM05D006304 ORTHO05D008584 2.5e-18 95.5 80 58.8
Ca_21844_v3 Cicer arietinum L. HOM05D006304 ORTHO05D008584 5.6e-18 94.4 81 63.0
Nitab4.5_0009895g0010 Nicotiana tabacum HOM05D006304 ORTHO05D008584 5.6e-18 94.4 89 58.4
Sabra15G0090300 Salix brachista HOM05D006304 ORTHO05D008584 5.6e-18 94.4 84 58.3
ECA247G4106 Erigeron canadensis HOM05D006304 ORTHO05D008584 9.6e-18 93.6 81 63.0
Gohir.A12G175370 Gossypium hirsutum HOM05D006304 ORTHO05D008584 9.6e-18 93.6 78 62.8
Psat4g053720 Pisum sativum HOM05D006304 ORTHO05D008584 9.6e-18 93.6 75 66.7
FAN13G0685 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.3e-17 93.2 80 62.5
TAR629G0077 Trochodendron aralioides HOM05D006304 ORTHO05D008584 1.3e-17 93.2 84 61.9
FAN04G3159 Fragaria x ananassa HOM05D006304 ORTHO05D008584 2.8e-17 92.0 80 61.2
CSS0027880 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 4.8e-17 91.3 130 46.2
FAN08G3028 Fragaria x ananassa HOM05D006304 ORTHO05D008584 4.8e-17 91.3 77 62.3
Nn3g17140 Nelumbo nucifera HOM05D006304 ORTHO05D008584 4.8e-17 91.3 82 57.3
Thecc.03G080300 Theobroma cacao HOM05D006304 ORTHO05D008584 1.1e-16 90.1 82 58.5
Aqoxy3G00750 Aquilegia oxysepala HOM05D006304 ORTHO05D008584 3.1e-16 88.6 89 56.2
MBI12_g19403_MAGBIO Magnolia biondii HOM05D006304 ORTHO05D008584 5.3e-16 87.8 85 57.6
CANSAT80G1066 Cannabis sativa HOM05D006304 ORTHO05D008584 1.5e-15 86.3 82 59.8
CAN.G628.40 Capsicum annuum HOM05D006304 ORTHO05D008584 3.4e-15 85.1 90 52.2
TAR371G0034 Trochodendron aralioides HOM05D006304 ORTHO05D008584 3.4e-15 85.1 84 58.3
unitig_0.g2536 Utricularia gibba HOM05D006304 ORTHO05D008584 3.4e-15 85.1 70 60.0
Cc04_g15450 Coffea canephora HOM05D006304 ORTHO05D008584 5.8e-15 84.3 80 57.5
COL.COLO4_05911 Corchorus olitorius HOM05D006304 ORTHO05D008584 7.6e-15 84.0 81 56.8
HPP92_021789 Vanilla planifolia HOM05D006304 ORTHO05D008584 1.3e-14 83.2 82 57.3
Lsat_1_v5_gn_1_10941 Lactuca sativa HOM05D006304 ORTHO05D008584 4.9e-14 81.3 78 59.0
Sp2g25930 Schrenkiella parvula HOM05D006304 ORTHO05D008584 8.4e-14 80.5 77 55.8
THA.LOC104821457 Tarenaya hassleriana HOM05D006304 ORTHO05D008584 1.1e-13 80.1 74 58.1
PGR083G1524 Punica granatum HOM05D006304 ORTHO05D008584 2.4e-13 79.0 76 57.9
Mapoly0068s0038 Marchantia polymorpha HOM05D006304 ORTHO05D008584 2.1e-12 75.9 80 47.5
AL8G39730 Arabidopsis lyrata HOM05D006304 ORTHO05D008584 3.5e-12 75.1 72 55.6
SEGI_29067 Sequoiadendron giganteum HOM05D006304 ORTHO05D008584 3.5e-12 75.1 76 51.3
Aa31LG11G920 Aethionema arabicum HOM05D006304 ORTHO05D008584 4.6e-12 74.7 71 56.3
AT5G62760 Arabidopsis thaliana HOM05D006304 ORTHO05D008584 7.8e-12 73.9 76 52.6
CDE06G1311 Ceratophyllum demersum HOM05D006304 ORTHO05D008584 1.7e-11 72.8 85 42.4
Os02g0215000 Oryza sativa ssp. japonica HOM05D006304 ORTHO05D008584 2.3e-11 72.4 79 51.9
Carub.0008s2349 Capsella rubella HOM05D006304 ORTHO05D008584 3.0e-11 72.0 72 54.2
Thhalv10003777m.g Eutrema salsugineum HOM05D006304 ORTHO05D008584 3.0e-11 72.0 76 52.6
BcaB02g09690 Brassica carinata HOM05D006304 ORTHO05D008584 1.5e-10 69.7 71 53.5
BcaC01g02519 Brassica carinata HOM05D006304 ORTHO05D008584 1.5e-10 69.7 71 53.5
A06p29540 Brassica napus HOM05D006304 ORTHO05D008584 1.5e-10 69.7 71 53.5
C03p63960 Brassica napus HOM05D006304 ORTHO05D008584 1.5e-10 69.7 71 53.5
BolC3t18650H Brassica oleracea HOM05D006304 ORTHO05D008584 1.5e-10 69.7 71 53.5
BraA06t25899Z Brassica rapa HOM05D006304 ORTHO05D008584 1.5e-10 69.7 71 53.5
CARHR276550 Cardamine hirsuta HOM05D006304 ORTHO05D008584 2.5e-10 68.9 75 50.7
Zm00001eb240230 Zea mays HOM05D006304 ORTHO05D008584 4.3e-10 68.2 73 50.7
ATR1120G178 Amborella trichopoda HOM05D006304 ORTHO05D008584 1.6e-09 66.2 86 45.3
EL10Ac5g10949 Beta vulgaris HOM05D006304 ORTHO05D008584 4.8e-09 64.7 52 55.8
Manes.06G096000 Manihot esculenta HOM05D006304 ORTHO05D008584 1.4e-08 63.2 54 64.8


User provided reference genes

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