Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.2e-273 946.0 513 100.0
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.8e-221 772.7 424 100.0
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 3.2e-178 629.0 510 68.6
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 9.2e-178 627.5 513 69.8
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 1.0e-176 624.0 516 70.5
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 3.4e-164 582.4 499 70.3
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 9.8e-164 580.9 514 63.8
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 1.7e-147 526.9 512 64.5
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 8.4e-139 498.0 501 61.3
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 2.1e-134 483.4 519 56.1
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 9.0e-133 478.0 498 57.2
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 6.4e-131 471.9 522 59.0
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 4.2e-130 469.2 514 55.1
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 2.1e-129 466.8 514 55.6
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.8e-128 463.8 514 54.3
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.1e-127 461.1 513 53.8
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 1.1e-125 454.5 513 55.0
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 1.4e-125 454.1 509 57.4
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 8.4e-123 444.9 513 52.8
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 1.1e-122 444.5 479 57.8
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 2.5e-122 443.4 511 54.8
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.0e-120 438.0 508 53.1
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 3.9e-120 436.0 512 55.9
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.1e-119 434.5 516 52.5
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 3.3e-119 433.0 513 54.4
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 3.7e-118 429.5 518 54.4
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 5.3e-117 425.6 529 53.3
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 5.3e-117 425.6 521 54.3
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 5.3e-117 425.6 510 51.8
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 6.9e-117 425.2 518 54.8
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 9.0e-117 424.9 512 54.7
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 3.4e-116 422.9 510 53.7
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 4.5e-116 422.5 520 53.3
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 2.2e-115 420.2 518 54.1
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 4.2e-114 416.0 507 51.7
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 5.5e-114 415.6 518 53.1
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.1e-113 413.7 506 51.6
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 4.6e-113 412.5 510 52.5
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 6.7e-112 408.7 515 50.5
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 1.1e-111 407.9 527 54.1
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 9.7e-111 404.8 506 50.0
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 1.3e-110 404.4 509 53.2
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 1.1e-109 401.4 504 51.8
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 4.2e-106 389.4 508 48.0
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 3.9e-104 382.9 503 50.1
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 3.9e-104 382.9 534 47.6
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 8.8e-104 381.7 509 47.9
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 3.3e-103 379.8 510 48.6
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 7.4e-103 378.6 448 54.9
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 1.7e-102 377.5 505 49.7
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 1.5e-100 370.9 504 50.8
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 2.0e-100 370.5 508 47.4
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 1.3e-99 367.9 504 50.0
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 2.2e-99 367.1 535 47.3
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 3.8e-99 366.3 530 49.6
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 3.8e-99 366.3 521 51.1
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 9.4e-98 361.7 537 45.4
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 2.1e-97 360.5 514 48.4
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 7.9e-97 358.6 541 46.6
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 6.7e-96 355.5 500 47.8
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 2.0e-95 354.0 509 47.2
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 1.8e-93 347.4 512 50.4
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 4.1e-93 346.3 513 46.0
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 7.7e-92 342.0 414 52.7
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 7.7e-92 342.0 506 46.2
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 1.0e-91 341.7 448 49.6
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 3.8e-91 339.7 523 44.9
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 7.2e-90 335.5 385 50.9
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 7.2e-90 335.5 519 45.3
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 2.1e-89 334.0 520 47.5
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 4.7e-89 332.8 513 45.4
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.0e-88 331.6 534 43.6
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 1.4e-88 331.3 520 45.0
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 2.3e-88 330.5 514 43.6
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 3.0e-88 330.1 510 47.5
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 4.4e-87 326.2 512 46.1
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 5.7e-87 325.9 521 45.3
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 2.2e-86 323.9 423 51.1
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 3.7e-86 323.2 519 45.5
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 3.7e-86 323.2 521 45.1
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 3.7e-86 323.2 521 46.8
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 4.8e-86 322.8 509 45.2
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 7.7e-84 315.5 517 45.3
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 2.9e-83 313.5 517 44.5
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 3.8e-83 313.2 516 44.8
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 5.0e-83 312.8 442 49.1
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 1.9e-82 310.8 513 45.2
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.5e-82 310.5 522 43.1
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 7.2e-82 308.9 510 42.7
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 4.7e-81 306.2 445 50.1
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 8.0e-81 305.4 405 46.4
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 2.0e-79 300.8 477 48.2
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 4.4e-79 299.7 448 48.9
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.4e-77 294.7 527 41.6
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 1.6e-76 291.2 522 40.8
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 3.5e-76 290.0 513 41.1
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 5.0e-75 286.2 511 41.5
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 1.1e-74 285.0 508 41.9
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 2.7e-73 280.4 513 40.7
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 1.0e-72 278.5 481 41.8
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 8.8e-72 275.4 444 44.4
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 3.4e-71 273.5 535 40.0
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 1.8e-69 267.7 432 41.9
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 4.5e-68 263.1 458 40.2
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 4.5e-68 263.1 477 42.1
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 7.7e-68 262.3 366 46.4
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 3.6e-65 253.4 522 39.7
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 3.0e-64 250.4 519 42.4
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 1.5e-63 248.1 436 40.8
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.1e-61 241.9 501 40.7
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 1.8e-61 241.1 273 51.6
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.8e-61 241.1 349 45.0
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 2.4e-61 240.7 422 40.3
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 1.6e-60 238.0 424 40.1
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 7.8e-60 235.7 425 40.0
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 1.0e-59 235.3 515 39.4
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 1.3e-59 235.0 425 39.8
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 5.6e-58 229.6 423 39.0
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 5.6e-58 229.6 424 41.7
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 2.1e-57 227.6 518 40.0
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 2.8e-57 227.3 508 37.8
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 6.8e-56 222.6 448 42.0
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 8.9e-56 222.2 433 38.1
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 7.0e-53 212.6 522 37.5
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 7.8e-52 209.1 450 37.8
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 5.0e-51 206.5 513 34.7
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 5.6e-50 203.0 435 40.5
Rhsim07G0146000 Rhododendron simsii HOM05D003987 ORTHO05D004532 5.6e-50 203.0 378 43.4
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 2.1e-49 201.1 453 37.7
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 6.8e-48 196.1 497 33.0
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 3.4e-47 193.7 440 39.3
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 1.3e-46 191.8 452 37.2
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 1.7e-46 191.4 368 41.0
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 2.9e-46 190.7 486 35.6
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 6.4e-46 189.5 429 38.9
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 3.5e-44 183.7 414 36.0
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 4.6e-44 183.3 414 35.7
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 6.0e-44 183.0 414 35.7
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 2.0e-39 167.9 122 73.8
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 2.6e-39 167.5 389 34.7
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 6.4e-38 162.9 144 62.5
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 1.6e-36 158.3 437 33.2
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 1.0e-35 155.6 363 35.8
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 1.5e-34 151.8 300 40.3
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.2e-33 148.7 473 29.6
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 4.7e-33 146.7 212 43.9
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 1.4e-32 145.2 529 32.7
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 9.9e-31 139.0 139 53.2
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 4.9e-30 136.7 450 32.4
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 6.4e-30 136.3 140 65.0
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.4e-29 134.4 179 43.6
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 7.1e-29 132.9 144 52.8
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 7.8e-28 129.4 551 29.0
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 3.4e-23 114.0 523 28.5
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 5.8e-23 113.2 294 35.0
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 1.1e-21 109.0 214 41.1
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 1.2e-15 89.0 213 29.1
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 4.5e-15 87.0 58 74.1
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.7e-14 85.1 426 27.7
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.4e-13 82.0 239 32.2
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.9e-13 81.6 106 41.5
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 7.1e-13 79.7 213 33.3
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 1.5e-10 72.0 72 50.0
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 3.3e-10 70.9 231 29.4
SHI32880 Sapria himalayana HOM05D003987 ORTHO05D004532 2.1e-09 68.2 203 32.5
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 8.2e-09 66.2 314 27.1
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 1.1e-08 65.9 95 40.0
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 1.8e-08 65.1 122 41.8
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 2.4e-08 64.7 43 69.8
unitig_26.g9098 Utricularia gibba HOM05D003987 ORTHO05D004532 4.0e-08 63.9 135 32.6
FAN08G1429 Fragaria x ananassa HOM05D003987 ORTHO05D004532 5.3e-08 63.5 123 39.8
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 6.9e-08 63.2 118 36.4
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 2.6e-07 61.2 177 29.4
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 3.4e-07 60.8 188 29.8
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 3.8e-06 57.4 236 26.7
Glyma.03G074233 Glycine max HOM05D003987 ORTHO05D004532 8.4e-06 56.2 123 36.6


User provided reference genes

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