Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027185 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 6.6e-174 614.0 323 100.0
CSS0017066 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 8.1e-172 607.1 323 98.5
Actinidia40470 Actinidia chinensis HOM05D005825 ORTHO05D006483 6.0e-143 511.1 322 83.5
Dinv36528 Davidia involucrata HOM05D005825 ORTHO05D006483 6.0e-143 511.1 322 82.3
Rhsim01G0070600 Rhododendron simsii HOM05D005825 ORTHO05D006483 2.5e-141 505.8 325 80.9
vmacro20556 Vaccinium macrocarpon HOM05D005825 ORTHO05D006483 5.6e-141 504.6 323 78.6
Hma1.2p1_0018F.1_g012420 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 5.8e-138 494.6 321 81.0
Hma1.2p1_2368F.1_g320700 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 1.3e-137 493.4 321 80.7
DCAR_009187 Daucus carota HOM05D005825 ORTHO05D006483 1.7e-137 493.0 320 75.3
Ca_21683_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 7.9e-135 484.2 322 75.2
Psat4g040200 Pisum sativum HOM05D005825 ORTHO05D006483 1.1e-133 480.3 322 74.2
Rhsim01G0071200 Rhododendron simsii HOM05D005825 ORTHO05D006483 1.1e-133 480.3 333 77.5
CANSAT11G1244 Cannabis sativa HOM05D005825 ORTHO05D006483 7.4e-133 477.6 323 74.3
Atru.chr7.1162 Acer truncatum HOM05D005825 ORTHO05D006483 3.1e-131 472.2 324 78.7
Medtr4g114160 Medicago truncatula HOM05D005825 ORTHO05D006483 4.1e-131 471.9 322 75.5
Hund09127 Selenicereus undatus HOM05D005825 ORTHO05D006483 4.1e-131 471.9 323 73.1
TAR625G0074 Trochodendron aralioides HOM05D005825 ORTHO05D006483 4.1e-131 471.9 324 75.9
Lsat_1_v5_gn_8_58680 Lactuca sativa HOM05D005825 ORTHO05D006483 6.9e-131 471.1 323 73.1
Phvul.003G164300 Phaseolus vulgaris HOM05D005825 ORTHO05D006483 1.2e-130 470.3 323 73.4
Glyma.13G167400 Glycine max HOM05D005825 ORTHO05D006483 4.5e-130 468.4 322 73.0
Lalb_Chr13g0301881 Lupinus albus HOM05D005825 ORTHO05D006483 4.5e-130 468.4 325 72.0
Oeu007499.1 Olea europaea HOM05D005825 ORTHO05D006483 7.6e-130 467.6 331 71.3
MELO3C004508.2 Cucumis melo HOM05D005825 ORTHO05D006483 1.7e-129 466.5 320 72.8
Ciclev10008932m.g Citrus clementina HOM05D005825 ORTHO05D006483 8.5e-129 464.2 320 73.1
Cpa.g.sc75.29 Carica papaya HOM05D005825 ORTHO05D006483 1.4e-128 463.4 321 71.3
CsaV3_2G002850 Cucumis sativus L. HOM05D005825 ORTHO05D006483 1.4e-128 463.4 320 72.5
arahy.Tifrunner.gnm1.ann1.9UEQ51 Arachis hypogaea HOM05D005825 ORTHO05D006483 4.2e-128 461.8 323 69.0
Lj4g0013357 Lotus japonicus HOM05D005825 ORTHO05D006483 4.2e-128 461.8 322 76.4
Solyc12g009430.2 Solanum lycopersicum HOM05D005825 ORTHO05D006483 4.2e-128 461.8 320 70.6
Sopen12g004430 Solanum pennellii HOM05D005825 ORTHO05D006483 5.5e-128 461.5 320 70.3
Lalb_Chr12g0197941 Lupinus albus HOM05D005825 ORTHO05D006483 7.2e-128 461.1 324 71.0
SGA_v2.0_scaffold299G47720 Striga asiatica HOM05D005825 ORTHO05D006483 7.2e-128 461.1 322 72.0
PGR142G1018 Punica granatum HOM05D005825 ORTHO05D006483 9.3e-128 460.7 325 70.8
arahy.Tifrunner.gnm1.ann1.1NB5KJ Arachis hypogaea HOM05D005825 ORTHO05D006483 1.2e-127 460.3 321 69.8
EL10Ac8g18654 Beta vulgaris HOM05D005825 ORTHO05D006483 1.6e-127 459.9 327 69.7
ClCG11G003030 Citrullus lanatus HOM05D005825 ORTHO05D006483 1.6e-127 459.9 320 71.9
DCAR_017816 Daucus carota HOM05D005825 ORTHO05D006483 2.1e-127 459.5 360 64.2
Peaxi162Scf00157g01524 Petunia axillaris HOM05D005825 ORTHO05D006483 2.7e-127 459.1 320 71.2
Lj2C942T8 Lonicera japonica HOM05D005825 ORTHO05D006483 6.1e-127 458.0 348 68.1
Sc08g0006620 Simmondsia chinensis HOM05D005825 ORTHO05D006483 7.9e-127 457.6 328 72.3
Sed0008025 Sechium edule HOM05D005825 ORTHO05D006483 1.8e-126 456.4 322 68.6
MSTRG.19597 Avicennia marina HOM05D005825 ORTHO05D006483 8.7e-126 454.1 321 69.8
Cfa003372 Carpinus fangiana HOM05D005825 ORTHO05D006483 8.7e-126 454.1 321 70.4
Eucgr.C01173 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.1e-125 453.8 327 72.8
SalBow3G4290 Salvia bowleyana HOM05D005825 ORTHO05D006483 1.1e-125 453.8 320 70.6
CAN.G1591.11 Capsicum annuum HOM05D005825 ORTHO05D006483 4.3e-125 451.8 320 71.2
arahy.Tifrunner.gnm1.ann1.85XGXJ Arachis hypogaea HOM05D005825 ORTHO05D006483 5.7e-125 451.4 323 71.5
Carub.0004s0696 Capsella rubella HOM05D005825 ORTHO05D006483 5.7e-125 451.4 321 69.5
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 9.7e-125 450.7 317 69.7
Migut.B01717 Erythranthe guttata HOM05D005825 ORTHO05D006483 1.3e-124 450.3 324 69.8
Nn2g12789 Nelumbo nucifera HOM05D005825 ORTHO05D006483 1.3e-124 450.3 326 70.6
CiPaw.03G244100 Carya illinoinensis HOM05D005825 ORTHO05D006483 1.6e-124 449.9 321 69.8
VMungo1215G3451 Vigna mungo HOM05D005825 ORTHO05D006483 6.3e-124 448.0 321 67.3
Sp4g09150 Schrenkiella parvula HOM05D005825 ORTHO05D006483 8.2e-124 447.6 321 68.5
AUR62013360 Chenopodium quinoa HOM05D005825 ORTHO05D006483 1.1e-123 447.2 283 74.9
Manes.06G058801 Manihot esculenta HOM05D005825 ORTHO05D006483 1.8e-123 446.4 327 73.7
Aqoxy5G01398 Aquilegia oxysepala HOM05D005825 ORTHO05D006483 2.4e-123 446.0 321 72.3
Ah.09g226210 Amaranthus hybridus HOM05D005825 ORTHO05D006483 3.1e-123 445.7 324 72.5
THA.LOC104815280 Tarenaya hassleriana HOM05D005825 ORTHO05D006483 5.3e-123 444.9 323 69.0
MBI16_g24711_MAGBIO Magnolia biondii HOM05D005825 ORTHO05D006483 6.9e-123 444.5 322 68.6
Sabra02G0094300 Salix brachista HOM05D005825 ORTHO05D006483 6.9e-123 444.5 322 70.8
Potri.014G017900 Populus trichocarpa HOM05D005825 ORTHO05D006483 9.1e-123 444.1 322 74.8
arahy.Tifrunner.gnm1.ann1.R6UVTB Arachis hypogaea HOM05D005825 ORTHO05D006483 1.2e-122 443.7 322 69.6
AL4G19680 Arabidopsis lyrata HOM05D005825 ORTHO05D006483 1.5e-122 443.4 322 68.3
BcaB06g28186 Brassica carinata HOM05D005825 ORTHO05D006483 3.4e-122 442.2 324 71.0
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 5.9e-122 441.4 321 67.3
Lj2A929T15 Lonicera japonica HOM05D005825 ORTHO05D006483 5.9e-122 441.4 348 67.2
AT2G26680 Arabidopsis thaliana HOM05D005825 ORTHO05D006483 7.7e-122 441.0 322 68.3
Prupe.7G242700 Prunus persica HOM05D005825 ORTHO05D006483 2.9e-121 439.1 325 68.3
Thhalv10002044m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 5.0e-121 438.3 321 67.3
MD02G1032800 Malus domestica HOM05D005825 ORTHO05D006483 8.5e-121 437.6 322 68.0
A04p21320 Brassica napus HOM05D005825 ORTHO05D006483 1.1e-120 437.2 325 68.9
BraA04t17698Z Brassica rapa HOM05D005825 ORTHO05D006483 1.1e-120 437.2 325 68.9
FAN19G0135 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.1e-120 437.2 323 69.0
HanXRQChr17g0537711 Helianthus annuus HOM05D005825 ORTHO05D006483 1.1e-120 437.2 322 72.7
PSO782G3266 Papaver somniferum HOM05D005825 ORTHO05D006483 1.4e-120 436.8 325 68.0
Sabra14G0011800 Salix brachista HOM05D005825 ORTHO05D006483 1.4e-120 436.8 323 72.1
FvH4_1g03280 Fragaria vesca HOM05D005825 ORTHO05D006483 1.9e-120 436.4 323 68.7
Nitab4.5_0014105g0010 Nicotiana tabacum HOM05D005825 ORTHO05D006483 1.9e-120 436.4 318 70.1
Nitab4.5_0002658g0050 Nicotiana tabacum HOM05D005825 ORTHO05D006483 2.5e-120 436.0 318 70.1
FAN26G2420 Fragaria x ananassa HOM05D005825 ORTHO05D006483 3.2e-120 435.6 326 68.7
PSO675G5818 Papaver somniferum HOM05D005825 ORTHO05D006483 5.5e-120 434.9 327 66.4
TWI34G0282 Tripterygium wilfordii HOM05D005825 ORTHO05D006483 1.2e-119 433.7 287 73.5
HanXRQChr17g0537731 Helianthus annuus HOM05D005825 ORTHO05D006483 1.6e-119 433.3 328 68.3
FAN23G1198 Fragaria x ananassa HOM05D005825 ORTHO05D006483 2.1e-119 433.0 326 68.4
Thecc.09G126400 Theobroma cacao HOM05D005825 ORTHO05D006483 2.7e-119 432.6 330 68.2
FAN28G2006 Fragaria x ananassa HOM05D005825 ORTHO05D006483 3.6e-119 432.2 323 69.3
C04p57230 Brassica napus HOM05D005825 ORTHO05D006483 7.9e-119 431.0 327 70.3
BolC4t27250H Brassica oleracea HOM05D005825 ORTHO05D006483 1.4e-118 430.3 327 71.3
Gorai.010G064100 Gossypium raimondii HOM05D005825 ORTHO05D006483 1.8e-118 429.9 330 67.9
Gohir.D06G054601 Gossypium hirsutum HOM05D005825 ORTHO05D006483 5.1e-118 428.3 330 67.6
Gohir.A06G056101 Gossypium hirsutum HOM05D005825 ORTHO05D006483 8.8e-118 427.6 327 70.0
unitig_748.g8100 Utricularia gibba HOM05D005825 ORTHO05D006483 8.8e-118 427.6 322 67.4
BcaC02g08209 Brassica carinata HOM05D005825 ORTHO05D006483 1.1e-117 427.2 328 70.7
RcHm_v2.0_Chr2g0088431 Rosa chinensis HOM05D005825 ORTHO05D006483 1.1e-117 427.2 330 66.7
Duzib168G1077 Durio zibethinus HOM05D005825 ORTHO05D006483 2.6e-117 426.0 327 66.7
Thhalv10023596m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 8.2e-116 421.0 321 65.7
QL10p023454 Quercus lobata HOM05D005825 ORTHO05D006483 1.9e-112 409.8 498 48.4
CDE04G1080 Ceratophyllum demersum HOM05D005825 ORTHO05D006483 3.2e-112 409.1 327 63.0
Os03g0566600 Oryza sativa ssp. japonica HOM05D005825 ORTHO05D006483 5.7e-109 398.3 280 68.9
HanXRQChr06g0180341 Helianthus annuus HOM05D005825 ORTHO05D006483 8.2e-108 394.4 289 68.9
HPP92_017605 Vanilla planifolia HOM05D005825 ORTHO05D006483 3.1e-107 392.5 286 67.5
Haze_25579 Corylus avellana HOM05D005825 ORTHO05D006483 1.2e-106 390.6 313 65.2
Zm00001eb043030 Zea mays HOM05D005825 ORTHO05D006483 7.7e-106 387.9 265 69.4
ATR0225G021 Amborella trichopoda HOM05D005825 ORTHO05D006483 1.5e-104 383.6 262 72.9
SHI03392 Sapria himalayana HOM05D005825 ORTHO05D006483 8.0e-103 377.9 383 52.5
AUR62011128 Chenopodium quinoa HOM05D005825 ORTHO05D006483 3.0e-102 375.9 325 60.3
ECA246G2031 Erigeron canadensis HOM05D000004 ORTHO05D000002 1.2e-87 327.4 202 78.7
Potri.002G119800 Populus trichocarpa HOM05D005825 ORTHO05D006483 5.7e-85 318.5 190 80.5
TPR.G10697 Trifolium pratense HOM05D005825 ORTHO05D006483 1.3e-84 317.4 183 85.2
AagrBONN_evm.TU.Sc2ySwM_344.1792 Anthoceros agrestis HOM05D005825 ORTHO05D006483 3.7e-84 315.8 268 55.2
GSVIVG01015529001 Vitis vinifera HOM05D005825 ORTHO05D006483 1.5e-80 303.9 168 88.1
Cc06_g08520 Coffea canephora HOM05D005825 ORTHO05D006483 9.5e-80 301.2 170 86.5
Glyma.17G115000 Glycine max HOM05D005825 ORTHO05D006483 1.6e-79 300.4 176 83.5
SMO147G0115 Selaginella moellendorffii HOM05D005825 ORTHO05D006483 6.1e-79 298.5 259 55.2
CiPaw.04G171000 Carya illinoinensis HOM05D005825 ORTHO05D006483 3.0e-78 296.2 175 81.7
CARHR118580 Cardamine hirsuta HOM05D005825 ORTHO05D006483 3.0e-65 253.1 203 60.6
Ca_13270_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 9.2e-59 231.5 184 64.1
Actinidia21988 Actinidia chinensis HOM05D005825 ORTHO05D006483 3.6e-55 219.5 123 88.6
Ca_14592_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 6.2e-55 218.8 184 65.2
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 1.9e-48 197.2 163 55.8
Eucgr.G00617 Eucalyptus grandis HOM05D005825 ORTHO05D006483 4.3e-48 196.1 121 80.2
Eucgr.B02426 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.2e-45 188.0 121 76.9
CARHR118590 Cardamine hirsuta HOM05D005825 ORTHO05D006483 4.4e-45 186.0 120 73.3
Eucgr.C03225 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.2e-42 177.9 115 75.7
TAR381G0761 Trochodendron aralioides HOM05D005825 ORTHO05D006483 6.9e-38 162.2 151 62.3
Eucgr.E01840 Eucalyptus grandis HOM05D005825 ORTHO05D006483 3.4e-37 159.8 121 70.2
Eucgr.B02447 Eucalyptus grandis HOM05D005825 ORTHO05D006483 4.6e-34 149.4 95 78.9
CAN.G204.2 Capsicum annuum HOM05D005825 ORTHO05D006483 1.8e-22 110.9 73 72.6
SalBow6G2945 Salvia bowleyana HOM05D000060 ORTHO05D000082 2.2e-15 87.4 124 41.1
Zm00001eb219900 Zea mays HOM05D005825 ORTHO05D006483 1.5e-13 81.3 161 34.2
VMungo0464G1687 Vigna mungo HOM05D005825 ORTHO05D006483 1.9e-11 74.3 55 63.6
Cre12.g488550 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 3.2e-11 73.6 148 34.5
MCO17G084 Micromonas commoda HOM05D051517 ORTHO05D006483 1.8e-09 67.8 174 25.9
Cre02.g103000 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 1.1e-08 65.1 145 34.5
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 6.3e-07 59.3 52 61.5
PRCOL_00003044 Prasinoderma coloniale HOM05D024924 ORTHO05D006483 8.2e-07 58.9 151 31.1


User provided reference genes

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