Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027181 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 2.1e-52 208.8 104 100.0
CSS0026820 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 3.1e-48 194.9 104 92.3
CSS0020529 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 3.8e-14 81.6 64 65.6
vmacro12180 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 1.9e-13 79.3 65 64.6
Rhsim06G0165700 Rhododendron simsii HOM05D000399 ORTHO05D000304 3.6e-12 75.1 64 60.9
Ciclev10016164m.g Citrus clementina HOM05D000399 ORTHO05D000304 1.4e-11 73.2 64 59.4
Sopen07g025140 Solanum pennellii HOM05D000399 ORTHO05D000304 2.3e-11 72.4 54 63.0
PGSC0003DMG400000675 Solanum tuberosum HOM05D000399 ORTHO05D000304 3.9e-11 71.6 54 61.1
CSS0017112 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 5.1e-11 71.2 64 54.7
CSS0030062 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 5.1e-11 71.2 64 54.7
Solyc07g049160.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 5.1e-11 71.2 54 61.1
Hma1.2p1_0842F.1_g227050 Hydrangea macrophylla HOM05D000399 ORTHO05D000304 8.8e-11 70.5 64 57.8
Migut.H01231 Erythranthe guttata HOM05D000399 ORTHO05D000304 1.1e-10 70.1 71 50.7
SGA_v2.0_scaffold159G37572 Striga asiatica HOM05D000399 ORTHO05D000304 1.5e-10 69.7 73 52.1
CAN.G834.2 Capsicum annuum HOM05D000399 ORTHO05D000304 2.0e-10 69.3 54 59.3
Dinv08739 Davidia involucrata HOM05D000399 ORTHO05D000304 3.3e-10 68.6 47 68.1
Lsat_1_v5_gn_7_92641 Lactuca sativa HOM05D000399 ORTHO05D000304 3.3e-10 68.6 59 55.9
Cc05_g03400 Coffea canephora HOM05D000399 ORTHO05D000304 4.3e-10 68.2 54 59.3
Hma1.2p1_0842F.1_g227040 Hydrangea macrophylla HOM05D000399 ORTHO05D000304 4.3e-10 68.2 50 64.0
Nitab4.5_0005321g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 5.7e-10 67.8 54 57.4
Potri.002G226700 Populus trichocarpa HOM05D000399 ORTHO05D000304 5.7e-10 67.8 64 53.1
Atru.chr6.3232 Acer truncatum HOM05D000399 ORTHO05D000304 7.4e-10 67.4 64 53.1
Eucgr.K00771 Eucalyptus grandis HOM05D000399 ORTHO05D000304 7.4e-10 67.4 64 54.7
Lj8A128T49 Lonicera japonica HOM05D000399 ORTHO05D000304 9.7e-10 67.0 50 64.0
COL.COLO4_21840 Corchorus olitorius HOM05D000399 ORTHO05D000304 1.3e-09 66.6 64 50.0
Duzib133G0461 Durio zibethinus HOM05D000399 ORTHO05D000304 1.7e-09 66.2 54 53.7
Oeu007118.1 Olea europaea HOM05D000291 ORTHO05D008053 1.7e-09 66.2 54 53.7
Sabra02G0173300 Salix brachista HOM05D000399 ORTHO05D000304 2.2e-09 65.9 64 51.6
Gorai.001G215700 Gossypium raimondii HOM05D000399 ORTHO05D000304 2.8e-09 65.5 64 50.0
Lj8A128T48 Lonicera japonica HOM05D000399 ORTHO05D000304 2.8e-09 65.5 64 51.6
PGSC0003DMG400020752 Solanum tuberosum HOM05D000399 ORTHO05D000304 2.8e-09 65.5 50 60.0
Gohir.A11G154100 Gossypium hirsutum HOM05D000399 ORTHO05D000304 4.8e-09 64.7 64 48.4
HanXRQChr12g0373841 Helianthus annuus HOM05D000399 ORTHO05D000304 4.8e-09 64.7 66 51.5
Nitab4.5_0000482g0020 Nicotiana tabacum HOM05D000399 ORTHO05D000304 4.8e-09 64.7 54 57.4
Peaxi162Scf00921g00025 Petunia axillaris HOM05D000399 ORTHO05D000304 4.8e-09 64.7 54 53.7
Cc05_g03410 Coffea canephora HOM05D000399 ORTHO05D000304 6.3e-09 64.3 54 59.3
ECA236G2908 Erigeron canadensis HOM05D000399 ORTHO05D000304 6.3e-09 64.3 54 55.6
HanXRQChr04g0126951 Helianthus annuus HOM05D000399 ORTHO05D000304 6.3e-09 64.3 54 57.4
Sc21g0001200 Simmondsia chinensis HOM05D000399 ORTHO05D000304 6.3e-09 64.3 64 53.1
MSTRG.14144 Avicennia marina HOM05D000399 ORTHO05D000304 8.2e-09 63.9 47 57.4
SalBow1G0456 Salvia bowleyana HOM05D000399 ORTHO05D000304 8.2e-09 63.9 66 53.0
Solyc05g041920.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 8.2e-09 63.9 50 58.0
Actinidia09734 Actinidia chinensis HOM05D000399 ORTHO05D000304 1.1e-08 63.5 47 68.1
CiPaw.11G011600 Carya illinoinensis HOM05D000399 ORTHO05D000304 1.1e-08 63.5 67 50.7
Dinv08740 Davidia involucrata HOM05D000399 ORTHO05D000304 1.1e-08 63.5 63 49.2
Gohir.A07G186300 Gossypium hirsutum HOM05D000399 ORTHO05D000304 1.1e-08 63.5 64 48.4
Manes.13G068400 Manihot esculenta HOM05D000399 ORTHO05D000304 1.1e-08 63.5 64 50.0
Peaxi162Scf00147g01712 Petunia axillaris HOM05D000399 ORTHO05D000304 1.1e-08 63.5 64 51.6
Sopen05g025990 Solanum pennellii HOM05D000399 ORTHO05D000304 1.4e-08 63.2 60 53.3
MSTRG.12282 Avicennia marina HOM05D000399 ORTHO05D000304 1.8e-08 62.8 56 51.8
CSS0041264 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 1.8e-08 62.8 50 58.0
CAN.G834.3 Capsicum annuum HOM05D000399 ORTHO05D000304 1.8e-08 62.8 63 49.2
Gohir.D07G192800 Gossypium hirsutum HOM05D000399 ORTHO05D000304 1.8e-08 62.8 64 48.4
Peaxi162Scf00921g00026 Petunia axillaris HOM05D000399 ORTHO05D000304 2.4e-08 62.4 52 55.8
QL08p031336 Quercus lobata HOM05D000399 ORTHO05D000304 2.4e-08 62.4 64 48.4
Rhsim06G0165800 Rhododendron simsii HOM05D000399 ORTHO05D000304 2.4e-08 62.4 65 47.7
Nitab4.5_0009416g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 3.1e-08 62.0 50 58.0
Oeu021493.1 Olea europaea HOM05D000399 ORTHO05D000304 3.1e-08 62.0 54 57.4
SalBow1G2750 Salvia bowleyana HOM05D000399 ORTHO05D000304 3.1e-08 62.0 47 57.4
GSVIVG01030481001 Vitis vinifera HOM05D000399 ORTHO05D000304 3.1e-08 62.0 52 48.1
Duzib138G0147 Durio zibethinus HOM05D000399 ORTHO05D000304 5.3e-08 61.2 64 48.4
TAR624G0809 Trochodendron aralioides HOM05D006348 ORTHO05D008261 5.3e-08 61.2 64 43.8
Cfa014335 Carpinus fangiana HOM05D000225 ORTHO05D001595 6.9e-08 60.8 64 50.0
RcHm_v2.0_Chr2g0158531 Rosa chinensis HOM05D000399 ORTHO05D000304 9.1e-08 60.5 64 50.0
DCAR_012935 Daucus carota HOM05D000399 ORTHO05D000304 1.2e-07 60.1 51 56.9
Nn1g03433 Nelumbo nucifera HOM05D000399 ORTHO05D000304 1.2e-07 60.1 64 45.3
Lsat_1_v5_gn_5_123501 Lactuca sativa HOM05D000399 ORTHO05D000304 1.5e-07 59.7 64 48.4
Medtr3g079980 Medicago truncatula HOM05D000399 ORTHO05D000304 1.5e-07 59.7 64 46.9
Nitab4.5_0000482g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.5e-07 59.7 45 64.4
Sed0024897 Sechium edule HOM05D000399 ORTHO05D000304 1.5e-07 59.7 42 59.5
ClCG02G002110 Citrullus lanatus HOM05D000399 ORTHO05D000304 2.0e-07 59.3 42 61.9
MD09G1111700 Malus domestica HOM05D000399 ORTHO05D000304 2.0e-07 59.3 64 50.0
MD17G1102000 Malus domestica HOM05D000399 ORTHO05D000304 2.0e-07 59.3 64 48.4
Medtr3g079860 Medicago truncatula HOM05D000399 ORTHO05D000304 2.0e-07 59.3 56 50.0
Medtr6g071535 Medicago truncatula HOM05D000399 ORTHO05D000304 2.0e-07 59.3 64 46.9
Oeu057780.1 Olea europaea HOM05D000399 ORTHO05D000304 2.0e-07 59.3 54 55.6
RcHm_v2.0_Chr7g0189841 Rosa chinensis HOM05D000399 ORTHO05D000304 2.0e-07 59.3 64 46.9
Cpa.g.sc87.111 Carica papaya HOM05D000399 ORTHO05D000304 2.6e-07 58.9 64 53.1
Migut.M01455 Erythranthe guttata HOM05D000399 ORTHO05D000304 2.6e-07 58.9 64 45.3
Haze_12793 Corylus avellana HOM05D000399 ORTHO05D000304 3.4e-07 58.5 64 48.4
TPR.G27598 Trifolium pratense HOM05D000399 ORTHO05D000304 3.4e-07 58.5 54 50.0
HanXRQChr16g0506621 Helianthus annuus HOM05D000399 ORTHO05D000304 4.5e-07 58.2 54 44.4
TPR.G35849 Trifolium pratense HOM05D000399 ORTHO05D000304 4.5e-07 58.2 42 59.5
CDE02G1170 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 5.9e-07 57.8 48 50.0
Migut.H01232 Erythranthe guttata HOM05D000399 ORTHO05D000304 5.9e-07 57.8 54 46.3
HanXRQChr16g0506601 Helianthus annuus HOM05D000399 ORTHO05D000304 5.9e-07 57.8 54 46.3
Gorai.007G171400 Gossypium raimondii HOM05D000399 ORTHO05D000304 1.0e-06 57.0 64 45.3
Nitab4.5_0000482g0060 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.0e-06 57.0 45 60.0
Psat5g112200 Pisum sativum HOM05D000399 ORTHO05D000304 1.0e-06 57.0 54 50.0
Lsat_1_v5_gn_7_92980 Lactuca sativa HOM05D000399 ORTHO05D000304 1.3e-06 56.6 47 48.9
Medtr3g080010 Medicago truncatula HOM05D000399 ORTHO05D000304 1.3e-06 56.6 54 50.0
FvH4_6g42650 Fragaria vesca HOM05D000399 ORTHO05D000304 1.7e-06 56.2 64 48.4
FAN09G3465 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.7e-06 56.2 64 46.9
ECA234G3970 Erigeron canadensis HOM05D000399 ORTHO05D000304 2.2e-06 55.8 47 55.3
PSO541G5711 Papaver somniferum HOM05D000399 ORTHO05D000304 2.2e-06 55.8 50 44.0
PSO675G4047 Papaver somniferum HOM05D000399 ORTHO05D000304 2.2e-06 55.8 50 44.0
Prupe.3G213200 Prunus persica HOM05D000399 ORTHO05D000304 2.2e-06 55.8 63 46.0
CANSAT64G0834 Cannabis sativa HOM05D000399 ORTHO05D000304 2.9e-06 55.5 54 46.3
ECA236G0530 Erigeron canadensis HOM05D000399 ORTHO05D000304 2.9e-06 55.5 54 44.4
TWI18G0932 Tripterygium wilfordii HOM05D000399 ORTHO05D000304 2.9e-06 55.5 63 46.0
FAN14G3121 Fragaria x ananassa HOM05D000399 ORTHO05D000304 3.8e-06 55.1 64 48.4
Thecc.01G178900 Theobroma cacao HOM05D000399 ORTHO05D000304 3.8e-06 55.1 54 48.1
CsaV3_7G003390 Cucumis sativus L. HOM05D000399 ORTHO05D000304 5.0e-06 54.7 54 51.9
Medtr3g080000 Medicago truncatula HOM05D000399 ORTHO05D000304 5.0e-06 54.7 54 46.3
Solyc07g049150.2 Solanum lycopersicum HOM05D000399 ORTHO05D000304 5.0e-06 54.7 68 45.6
FAN13G2096 Fragaria x ananassa HOM05D000399 ORTHO05D000304 6.5e-06 54.3 65 41.5
FAN08G0997 Fragaria x ananassa HOM05D000399 ORTHO05D000304 8.5e-06 53.9 65 40.0
Zm00001eb042770 Zea mays HOM05D000399 ORTHO05D000304 8.5e-06 53.9 51 49.0


User provided reference genes

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