Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 1.1e-99 366.7 195 100.0
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 5.9e-85 317.8 190 85.8
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 1.3e-84 316.6 184 90.8
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 1.3e-84 316.6 195 85.6
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 1.7e-84 316.2 196 84.7
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 2.9e-84 315.5 188 87.8
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 6.5e-84 314.3 185 88.6
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 6.5e-84 314.3 191 86.4
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 1.1e-83 313.5 183 87.4
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 1.5e-83 313.2 196 84.2
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 1.5e-83 313.2 187 85.0
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 3.2e-83 312.0 191 86.4
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 5.5e-83 311.2 190 84.2
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 2.7e-82 308.9 192 84.9
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 2.7e-82 308.9 187 87.2
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 3.6e-82 308.5 197 82.7
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 6.1e-82 307.8 197 83.2
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 6.1e-82 307.8 190 85.3
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 6.1e-82 307.8 195 85.6
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 8.0e-82 307.4 190 82.6
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 8.0e-82 307.4 184 86.4
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 8.0e-82 307.4 195 84.6
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.8e-81 306.2 190 82.6
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.8e-81 306.2 190 82.6
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 1.8e-81 306.2 191 83.2
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 2.3e-81 305.8 184 85.3
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 5.2e-81 304.7 180 86.7
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 5.2e-81 304.7 197 82.2
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 5.2e-81 304.7 197 82.2
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 8.8e-81 303.9 195 82.6
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 8.8e-81 303.9 195 81.0
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 1.2e-80 303.5 181 84.5
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 1.5e-80 303.1 195 80.5
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 2.0e-80 302.8 190 82.1
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 2.0e-80 302.8 195 83.1
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 4.4e-80 301.6 197 82.2
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 4.4e-80 301.6 231 73.2
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.7e-80 301.2 191 83.2
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 7.5e-80 300.8 188 81.4
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 9.8e-80 300.4 185 83.8
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 1.3e-79 300.1 195 83.6
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 2.8e-79 298.9 186 82.8
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 3.7e-79 298.5 184 82.6
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 3.7e-79 298.5 186 82.8
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 3.7e-79 298.5 186 82.8
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 3.7e-79 298.5 187 81.3
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 4.8e-79 298.1 187 80.7
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 4.8e-79 298.1 194 80.9
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 4.8e-79 298.1 173 86.7
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 4.8e-79 298.1 195 80.0
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 6.3e-79 297.7 191 82.2
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 1.1e-78 297.0 191 79.6
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 1.4e-78 296.6 186 82.8
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 1.8e-78 296.2 192 79.7
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 2.4e-78 295.8 196 79.6
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 2.4e-78 295.8 195 81.0
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 3.1e-78 295.4 182 82.4
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 5.4e-78 294.7 184 82.1
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 7.0e-78 294.3 183 81.4
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 7.0e-78 294.3 201 77.6
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 9.1e-78 293.9 195 78.5
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 9.1e-78 293.9 195 80.0
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 1.2e-77 293.5 186 80.6
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 1.6e-77 293.1 174 85.1
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 1.6e-77 293.1 197 78.2
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.5e-77 292.0 195 80.0
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 3.5e-77 292.0 174 84.5
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 4.5e-77 291.6 189 79.4
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 4.5e-77 291.6 192 79.2
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 4.5e-77 291.6 190 81.1
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 5.9e-77 291.2 192 78.1
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 5.9e-77 291.2 180 81.7
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 5.9e-77 291.2 195 80.0
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 5.9e-77 291.2 195 80.0
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 7.7e-77 290.8 189 78.8
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 7.7e-77 290.8 195 79.0
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 7.7e-77 290.8 176 82.4
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 1.0e-76 290.4 188 80.3
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 1.0e-76 290.4 187 80.2
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 1.7e-76 289.7 191 81.7
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 1.7e-76 289.7 188 78.7
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 2.9e-76 288.9 191 77.0
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 2.9e-76 288.9 191 77.5
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 3.8e-76 288.5 184 82.1
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.8e-76 288.5 176 81.8
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 5.0e-76 288.1 188 81.9
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 6.5e-76 287.7 185 78.9
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 6.5e-76 287.7 183 79.8
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 8.6e-76 287.3 185 78.9
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 8.6e-76 287.3 185 78.9
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 1.1e-75 287.0 188 80.9
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 1.1e-75 287.0 175 82.9
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 1.1e-75 287.0 187 78.6
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 1.5e-75 286.6 191 78.5
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 1.9e-75 286.2 185 78.9
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 9.5e-75 283.9 193 76.7
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 1.6e-74 283.1 186 79.0
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 1.6e-74 283.1 186 80.1
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 2.1e-74 282.7 195 77.9
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 2.1e-74 282.7 195 77.9
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 2.1e-74 282.7 195 77.9
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 2.1e-74 282.7 195 77.9
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 5.2e-73 278.1 182 78.0
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 8.8e-73 277.3 177 77.4
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 5.7e-72 274.6 222 67.6
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 1.7e-71 273.1 191 77.0
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 8.3e-71 270.8 231 64.9
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 3.1e-70 268.9 236 64.0
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 5.4e-70 268.1 168 83.3
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 1.6e-69 266.5 159 86.2
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 3.5e-69 265.4 190 74.7
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 1.5e-67 260.0 245 59.6
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 2.8e-66 255.8 189 73.0
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 1.2e-64 250.4 162 80.2
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.7e-63 246.5 191 72.8
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 1.6e-61 240.0 189 66.7
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 2.0e-61 239.6 171 69.0
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 7.8e-61 237.7 137 86.1
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 2.3e-60 236.1 137 88.3
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 1.2e-58 230.3 188 63.8
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 2.1e-58 229.6 137 86.9
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 1.8e-57 226.5 135 83.7
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 2.3e-57 226.1 134 84.3
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 1.7e-55 219.9 172 64.5
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 1.1e-54 217.2 172 62.8
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 1.4e-54 216.9 135 80.7
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.7e-52 209.9 123 87.0
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 3.3e-51 205.7 140 77.9
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 3.6e-50 202.2 133 80.5
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 1.8e-49 199.9 125 80.0
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 3.1e-49 199.1 211 57.8
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 9.9e-48 194.1 124 77.4
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 3.7e-47 192.2 110 88.2
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.8e-42 176.0 109 83.5
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.4e-41 173.7 102 84.3
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.4e-41 172.9 113 81.4
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 6.4e-39 164.9 107 79.4
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.7e-36 156.8 100 83.0
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.3e-36 156.4 99 78.8
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 7.3e-35 151.4 166 45.2
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 6.2e-34 148.3 102 74.5
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 1.2e-32 144.1 94 80.9
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 3.4e-32 142.5 90 82.2
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.4e-32 142.1 82 86.6
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 3.8e-31 139.0 162 43.2
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 4.6e-29 132.1 169 40.2
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.0e-28 131.0 103 70.9
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 1.7e-28 130.2 179 40.2
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 7.3e-27 124.8 104 65.4
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 1.6e-26 123.6 74 82.4
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 8.1e-26 121.3 88 65.9
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 3.1e-25 119.4 100 65.0
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.2e-21 107.5 68 80.9
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.0e-16 90.1 61 75.4
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 2.4e-14 83.2 49 83.7
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 6.0e-13 78.6 111 46.8
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.3e-12 77.4 114 45.6
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.3e-12 77.4 114 45.6
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 5.1e-12 75.5 114 44.7
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 6.7e-12 75.1 114 44.7
TPR.G26018 Trifolium pratense HOM05D004325 ORTHO05D049290 1.1e-11 74.3 66 63.6
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 4.0e-09 65.9 115 40.0
Actinidia14254 Actinidia chinensis HOM05D004325 ORTHO05D005470 5.8e-08 62.0 36 83.3


User provided reference genes

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