Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027143 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 6.5e-69 263.8 126 100.0
CSS0023154 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.2e-65 253.1 126 96.0
CSS0000056 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.6e-65 251.9 125 96.0
CSS0030235 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 5.4e-63 244.2 126 93.7
CSS0019964 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 5.0e-61 237.7 126 92.1
CSS0030327 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.9e-60 235.7 116 96.6
CSS0018077 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.6e-59 232.6 116 95.7
CSS0016301 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.8e-59 231.9 116 94.8
CSS0004008 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 3.6e-59 231.5 116 95.7
CSS0000994 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.3e-56 223.0 116 92.2
CSS0014937 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.3e-56 223.0 116 91.4
CSS0040510 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.0e-45 186.8 116 81.9
CANSAT11G1463 Cannabis sativa HOM05D001309 ORTHO05D000385 3.2e-23 112.1 85 61.2
CANSAT21G2150 Cannabis sativa HOM05D001309 ORTHO05D000385 7.1e-23 110.9 85 60.0
CANSAT35G0020 Cannabis sativa HOM05D001309 ORTHO05D000385 7.1e-23 110.9 116 46.6
CANSAT11G0213 Cannabis sativa HOM05D001309 ORTHO05D000385 8.7e-21 104.0 116 45.7
PGR044G2648 Punica granatum HOM05D000876 ORTHO05D000285 8.4e-16 87.4 85 47.1
vmacro21586 Vaccinium macrocarpon HOM05D008488 ORTHO05D000385 2.7e-14 82.4 109 45.0
vmacro21926 Vaccinium macrocarpon HOM05D008488 ORTHO05D000385 2.7e-14 82.4 109 45.0
vmacro23420 Vaccinium macrocarpon HOM05D008488 ORTHO05D000385 2.7e-14 82.4 109 45.0
MBI15_g36793_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.6e-14 81.6 105 41.9
MBI16_g07725_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D000385 1.3e-13 80.1 79 44.3
MBI11_g19485_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.9e-12 76.3 107 39.3
Lj9A299T35 Lonicera japonica HOM05D001309 ORTHO05D000385 4.3e-12 75.1 108 38.9
Cpa.g.c35072.1 Carica papaya HOM05D001309 ORTHO05D000385 5.6e-12 74.7 94 40.4
MBI13_g26301_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.6e-11 73.2 86 40.7
Gohir.A12G044100 Gossypium hirsutum HOM05D001309 ORTHO05D005970 2.8e-11 72.4 95 38.9
Gohir.A12G105966 Gossypium hirsutum HOM05D040140 ORTHO05D000385 2.8e-11 72.4 108 37.0
MBI09_g15192_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 2.8e-11 72.4 75 41.3
Gohir.D12G043100 Gossypium hirsutum HOM05D001309 ORTHO05D000385 3.6e-11 72.0 95 38.9
MBI14_g07746_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.6e-11 72.0 75 41.3
vmacro09403 Vaccinium macrocarpon HOM05D008488 ORTHO05D000385 3.6e-11 72.0 93 41.9
MBI05_g40697_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.8e-11 71.6 104 38.5
vmacro22655 Vaccinium macrocarpon HOM05D008488 ORTHO05D000385 4.8e-11 71.6 112 41.1
DCAR_001756 Daucus carota HOM05D001309 ORTHO05D000385 1.4e-10 70.1 88 40.9
Gorai.008G045300 Gossypium raimondii HOM05D001309 ORTHO05D005970 1.4e-10 70.1 95 37.9
COL.COLO4_17726 Corchorus olitorius HOM05D001309 ORTHO05D005970 2.4e-10 69.3 106 37.7
Gohir.D01G174600 Gossypium hirsutum HOM05D001309 ORTHO05D000385 2.4e-10 69.3 93 38.7
Gorai.002G216700 Gossypium raimondii HOM05D001309 ORTHO05D000385 2.4e-10 69.3 93 38.7
MBI19_g12820_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.1e-10 68.9 81 37.0
Manes.10G118800 Manihot esculenta HOM05D001309 ORTHO05D000385 3.1e-10 68.9 100 42.0
MBI19_g33997_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.0e-10 68.6 84 35.7
Gohir.A01G183600 Gossypium hirsutum HOM05D001309 ORTHO05D005970 1.2e-09 67.0 98 36.7
MBI14_g03116_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.2e-09 67.0 79 36.7
Dinv19412 Davidia involucrata HOM05D001309 ORTHO05D005970 2.0e-09 66.2 96 36.5
PGSC0003DMG400015737 Solanum tuberosum HOM05D001309 ORTHO05D000385 2.0e-09 66.2 78 43.6
Manes.07G023800 Manihot esculenta HOM05D001309 ORTHO05D005970 2.6e-09 65.9 77 41.6
MELO3C032241.2 Cucumis melo HOM05D000539 ORTHO05D000233 4.5e-09 65.1 81 43.2
arahy.Tifrunner.gnm1.ann1.HKAM97 Arachis hypogaea HOM05D010482 ORTHO05D000385 5.8e-09 64.7 83 39.8
ECA232G4413 Erigeron canadensis HOM05D000107 ORTHO05D000062 7.6e-09 64.3 101 35.6
ECA234G1533 Erigeron canadensis HOM05D000107 ORTHO05D000062 7.6e-09 64.3 101 35.6
Nn3g20149 Nelumbo nucifera HOM05D001309 ORTHO05D000385 7.6e-09 64.3 93 33.3
ECA164G0002 Erigeron canadensis HOM05D008488 ORTHO05D000385 9.9e-09 63.9 80 37.5
Lj5A265G37 Lonicera japonica HOM05D005763 ORTHO05D005970 9.9e-09 63.9 105 34.3
Actinidia01605 Actinidia chinensis HOM05D001309 ORTHO05D005970 1.3e-08 63.5 105 39.0
CSS0035442 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D005970 1.3e-08 63.5 117 33.3
CSS0011333 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.7e-08 63.2 79 36.7
CSS0013398 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.7e-08 63.2 77 41.6
Ca_04520_v3 Cicer arietinum L. HOM05D001309 ORTHO05D000385 1.7e-08 63.2 101 32.7
Nn1g01837 Nelumbo nucifera HOM05D006525 ORTHO05D007845 1.7e-08 63.2 102 37.3
CSS0006329 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.2e-08 62.8 85 38.8
arahy.Tifrunner.gnm1.ann1.5MEJ54 Arachis hypogaea HOM05D010482 ORTHO05D000385 2.9e-08 62.4 89 37.1
CSS0004946 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.9e-08 62.4 79 36.7
CSS0007321 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.9e-08 62.4 77 36.4
CSS0011055 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.9e-08 62.4 79 36.7
CSS0017872 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.9e-08 62.4 77 36.4
CSS0024690 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.9e-08 62.4 79 36.7
AUR62043436 Chenopodium quinoa HOM05D009343 ORTHO05D000385 2.9e-08 62.4 78 39.7
arahy.Tifrunner.gnm1.ann1.CXU7YK Arachis hypogaea HOM05D010482 ORTHO05D000385 3.8e-08 62.0 89 37.1
Nn2g11546 Nelumbo nucifera HOM05D001309 ORTHO05D000385 3.8e-08 62.0 107 31.8
Lsat_1_v5_gn_9_120520 Lactuca sativa HOM05D001309 ORTHO05D005970 6.4e-08 61.2 100 35.0
MBI01_g25641_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 6.4e-08 61.2 60 45.0
Oeu023404.2 Olea europaea HOM05D001309 ORTHO05D005970 6.4e-08 61.2 132 32.6
HanXRQChr03g0064971 Helianthus annuus HOM05D001309 ORTHO05D005970 8.4e-08 60.8 98 40.8
MBI19_g16213_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 8.4e-08 60.8 59 45.8
Thecc.02G018900 Theobroma cacao HOM05D005763 ORTHO05D005970 8.4e-08 60.8 87 36.8
CSS0000023 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.1e-07 60.5 79 35.4
ECA233G0549 Erigeron canadensis HOM05D008488 ORTHO05D000385 1.1e-07 60.5 78 35.9
Nn3g21442 Nelumbo nucifera HOM05D001309 ORTHO05D000385 1.1e-07 60.5 114 28.9
arahy.Tifrunner.gnm1.ann1.U7U33W Arachis hypogaea HOM05D010482 ORTHO05D000385 1.4e-07 60.1 89 36.0
CSS0042181 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.4e-07 60.1 79 35.4
AUR62036837 Chenopodium quinoa HOM05D009343 ORTHO05D011970 1.4e-07 60.1 75 40.0
Dinv05901 Davidia involucrata HOM05D014212 ORTHO05D000385 1.4e-07 60.1 64 45.3
arahy.Tifrunner.gnm1.ann1.U4Z5MQ Arachis hypogaea HOM05D010482 ORTHO05D000385 1.9e-07 59.7 86 39.5
MELO3C028785.2 Cucumis melo HOM05D000539 ORTHO05D000233 1.9e-07 59.7 82 41.5
ECA238G3595 Erigeron canadensis HOM05D008488 ORTHO05D000385 1.9e-07 59.7 72 41.7
GSVIVG01019142001 Vitis vinifera HOM05D008595 ORTHO05D009597 1.9e-07 59.7 101 34.7
AUR62022305 Chenopodium quinoa HOM05D009343 ORTHO05D000385 2.4e-07 59.3 108 34.3
MBI17_g16204_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 2.4e-07 59.3 60 43.3
Rhsim11G0122900 Rhododendron simsii HOM05D001309 ORTHO05D005970 2.4e-07 59.3 73 38.4
AUR62031112 Chenopodium quinoa HOM05D009343 ORTHO05D000385 3.2e-07 58.9 78 38.5
AUR62032537 Chenopodium quinoa HOM05D009343 ORTHO05D011970 3.2e-07 58.9 78 38.5
AUR62037174 Chenopodium quinoa HOM05D009343 ORTHO05D000385 3.2e-07 58.9 78 38.5
AUR62040089 Chenopodium quinoa HOM05D001309 ORTHO05D000385 3.2e-07 58.9 78 38.5
Gohir.A01G193333 Gossypium hirsutum HOM05D021375 ORTHO05D022808 3.2e-07 58.9 79 35.4
Lsat_1_v5_gn_9_120321 Lactuca sativa HOM05D005763 ORTHO05D005970 3.2e-07 58.9 111 34.2
MBI01_g25649_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.2e-07 58.9 60 43.3
Hund24527 Selenicereus undatus HOM05D009682 ORTHO05D000385 3.2e-07 58.9 104 34.6
arahy.Tifrunner.gnm1.ann1.465ER6 Arachis hypogaea HOM05D010482 ORTHO05D000385 4.2e-07 58.5 81 38.3
arahy.Tifrunner.gnm1.ann1.PL7LDA Arachis hypogaea HOM05D010482 ORTHO05D000385 4.2e-07 58.5 81 38.3
CSS0031187 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 4.2e-07 58.5 75 38.7
AUR62010806 Chenopodium quinoa HOM05D004615 ORTHO05D000385 4.2e-07 58.5 96 34.4
AUR62019804 Chenopodium quinoa HOM05D004615 ORTHO05D000385 4.2e-07 58.5 96 34.4
MBI08_g25554_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.2e-07 58.5 107 29.9
MELO3C027653.2 Cucumis melo HOM05D001963 ORTHO05D001863 5.5e-07 58.2 89 37.1
Hund03863 Selenicereus undatus HOM05D009682 ORTHO05D000385 5.5e-07 58.2 109 33.0
CANSAT25G0318 Cannabis sativa HOM05D007314 ORTHO05D010380 7.1e-07 57.8 77 39.0
ECA247G2658 Erigeron canadensis HOM05D001309 ORTHO05D000385 7.1e-07 57.8 79 31.6
FAN18G4094 Fragaria x ananassa HOM05D008321 ORTHO05D003768 7.1e-07 57.8 91 35.2
MBI09_g33431_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 7.1e-07 57.8 112 33.0
Ca_18931_v3 Cicer arietinum L. HOM05D001309 ORTHO05D000385 9.3e-07 57.4 101 31.7
Medtr7g027580 Medicago truncatula HOM05D010482 ORTHO05D000385 9.3e-07 57.4 82 36.6
Hund01438 Selenicereus undatus HOM05D004615 ORTHO05D000385 9.3e-07 57.4 78 38.5
vmacro01714 Vaccinium macrocarpon HOM05D005763 ORTHO05D005970 9.3e-07 57.4 107 29.9
Os04g0609900 Oryza sativa ssp. japonica HOM05D001309 ORTHO05D000385 1.2e-06 57.0 66 37.9
AUR62041672 Chenopodium quinoa HOM05D001309 ORTHO05D000385 1.6e-06 56.6 93 36.6
COL.COLO4_07670 Corchorus olitorius HOM05D001309 ORTHO05D000385 1.6e-06 56.6 48 47.9
Lj2g0010843 Lotus japonicus HOM05D004615 ORTHO05D000385 1.6e-06 56.6 126 29.4
Lj3g0027022 Lotus japonicus HOM05D004615 ORTHO05D000385 1.6e-06 56.6 126 29.4
Lj4g0021808 Lotus japonicus HOM05D001309 ORTHO05D000385 1.6e-06 56.6 104 32.7
MBI12_g08677_MAGBIO Magnolia biondii HOM05D001510 ORTHO05D000385 1.6e-06 56.6 85 30.6
MBI16_g34941_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.6e-06 56.6 95 33.7
Ciclev10003872m.g Citrus clementina HOM05D002644 ORTHO05D000233 2.1e-06 56.2 77 37.7
ECA236G1232 Erigeron canadensis HOM05D008488 ORTHO05D000385 2.1e-06 56.2 64 43.8
HanXRQChr03g0064951 Helianthus annuus HOM05D005763 ORTHO05D005970 2.1e-06 56.2 88 36.4
MBI11_g30647_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 2.1e-06 56.2 99 29.3
Hund24524 Selenicereus undatus HOM05D009682 ORTHO05D000385 2.1e-06 56.2 94 33.0
MELO3C033323.2 Cucumis melo HOM05D000616 ORTHO05D000233 2.7e-06 55.8 105 35.2
ECA096G0001 Erigeron canadensis HOM05D008488 ORTHO05D000385 2.7e-06 55.8 77 35.1
Nn1g00481 Nelumbo nucifera HOM05D001309 ORTHO05D000385 2.7e-06 55.8 78 38.5
Lj4g0009512 Lotus japonicus HOM05D001309 ORTHO05D000385 3.5e-06 55.5 63 39.7
COL.COLO4_06576 Corchorus olitorius HOM05D001309 ORTHO05D000385 4.6e-06 55.1 119 31.1
DCAR_032097 Daucus carota HOM05D004615 ORTHO05D000385 4.6e-06 55.1 118 31.4
ECA247G3253 Erigeron canadensis HOM05D005763 ORTHO05D005970 4.6e-06 55.1 95 32.6
RcHm_v2.0_Chr3g0460621 Rosa chinensis HOM05D007314 ORTHO05D003768 6.0e-06 54.7 106 31.1
AUR62013324 Chenopodium quinoa HOM05D010065 ORTHO05D000385 7.9e-06 54.3 106 34.9
AUR62036502 Chenopodium quinoa HOM05D009343 ORTHO05D011970 7.9e-06 54.3 89 36.0
AUR62042816 Chenopodium quinoa HOM05D010065 ORTHO05D000385 7.9e-06 54.3 66 40.9
HanXRQChr09g0240121 Helianthus annuus HOM05D004615 ORTHO05D000385 7.9e-06 54.3 101 35.6
Lj5g0025673 Lotus japonicus HOM05D001309 ORTHO05D000385 7.9e-06 54.3 94 33.0
MBI15_g37112_MAGBIO Magnolia biondii HOM05D000308 ORTHO05D000194 7.9e-06 54.3 76 31.6
Nn1g09472 Nelumbo nucifera HOM05D001309 ORTHO05D000385 7.9e-06 54.3 76 30.3
Os04g0610000 Oryza sativa ssp. japonica HOM05D001309 ORTHO05D000385 7.9e-06 54.3 112 32.1
Hund13368 Selenicereus undatus HOM05D009682 ORTHO05D000385 7.9e-06 54.3 95 35.8


User provided reference genes

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