Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027133 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 2.3e-218 761.9 371 100.0
CSS0042805 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 2.3e-218 761.9 371 100.0
Dinv37763 Davidia involucrata HOM05D004508 ORTHO05D005180 4.9e-173 611.3 370 80.3
Rhsim07G0101600 Rhododendron simsii HOM05D004508 ORTHO05D005180 2.3e-170 602.4 371 79.0
Actinidia27434 Actinidia chinensis HOM05D004508 ORTHO05D005180 3.9e-170 601.7 364 79.7
vmacro14042 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 5.6e-169 597.8 372 79.6
Hma1.2p1_0108F.1_g051860 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 7.3e-169 597.4 360 81.1
Hma1.2p1_1654F.1_g295900 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 2.1e-168 595.9 365 79.7
Prupe.5G079500 Prunus persica HOM05D004508 ORTHO05D005180 3.2e-164 582.0 371 76.8
TAR374G1167 Trochodendron aralioides HOM05D004508 ORTHO05D005180 1.2e-163 580.1 370 77.0
CiPaw.11G147500 Carya illinoinensis HOM05D004508 ORTHO05D005180 5.1e-162 574.7 370 75.1
Haze_02980 Corylus avellana HOM05D004508 ORTHO05D005180 6.9e-159 564.3 396 71.0
Lj8C255T7 Lonicera japonica HOM05D004508 ORTHO05D005180 6.9e-159 564.3 372 74.5
GSVIVG01004911001 Vitis vinifera HOM05D004508 ORTHO05D005180 6.9e-159 564.3 371 76.3
RcHm_v2.0_Chr4g0419741 Rosa chinensis HOM05D004508 ORTHO05D005180 9.0e-159 563.9 371 73.9
RcHm_v2.0_Chr7g0201591 Rosa chinensis HOM05D004508 ORTHO05D005180 9.0e-159 563.9 371 73.6
MD04G1079500 Malus domestica HOM05D004508 ORTHO05D005180 2.6e-158 562.4 370 74.1
Cpa.g.sc29.91 Carica papaya HOM05D004508 ORTHO05D005180 2.9e-157 558.9 369 72.9
QL12p014971 Quercus lobata HOM05D004508 ORTHO05D005180 2.9e-157 558.9 369 74.8
FvH4_5g00670 Fragaria vesca HOM05D004508 ORTHO05D005180 3.8e-157 558.5 371 72.8
arahy.Tifrunner.gnm1.ann1.CN31X8 Arachis hypogaea HOM05D004508 ORTHO05D005180 4.9e-157 558.1 372 71.0
arahy.Tifrunner.gnm1.ann1.VMS6QR Arachis hypogaea HOM05D004508 ORTHO05D005180 4.9e-157 558.1 372 71.0
Nitab4.5_0003534g0110 Nicotiana tabacum HOM05D004508 ORTHO05D005180 6.5e-157 557.8 370 72.2
FAN08G3098 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.1e-156 557.0 371 72.5
FAN13G3174 Fragaria x ananassa HOM05D004508 ORTHO05D005180 2.5e-156 555.8 371 72.2
FAN18G1402 Fragaria x ananassa HOM05D004508 ORTHO05D005180 3.2e-156 555.4 371 72.5
Lsat_1_v5_gn_3_3920 Lactuca sativa HOM05D004508 ORTHO05D005180 5.5e-156 554.7 372 71.8
Cc08_g13230 Coffea canephora HOM05D004508 ORTHO05D005180 3.5e-155 552.0 373 70.8
FAN04G0404 Fragaria x ananassa HOM05D004508 ORTHO05D005180 4.6e-155 551.6 366 72.7
Lj2g0024595 Lotus japonicus HOM05D004508 ORTHO05D005180 4.6e-155 551.6 371 70.9
Manes.01G073700 Manihot esculenta HOM05D004508 ORTHO05D005180 1.0e-154 550.4 369 72.4
PGSC0003DMG400003935 Solanum tuberosum HOM05D004508 ORTHO05D005180 1.0e-154 550.4 369 72.1
Atru.chr9.1431 Acer truncatum HOM05D004508 ORTHO05D005180 3.9e-154 548.5 375 72.8
Nitab4.5_0005465g0020 Nicotiana tabacum HOM05D004508 ORTHO05D005180 3.9e-154 548.5 370 71.4
CANSAT21G2188 Cannabis sativa HOM05D004508 ORTHO05D005180 1.1e-153 547.0 371 71.7
ClCG10G003140 Citrullus lanatus HOM05D004508 ORTHO05D005180 1.5e-153 546.6 367 72.2
HanXRQChr17g0549071 Helianthus annuus HOM05D004508 ORTHO05D005180 1.5e-153 546.6 373 72.1
Sopen08g027840 Solanum pennellii HOM05D004508 ORTHO05D005180 1.5e-153 546.6 369 71.5
Nitab4.5_0007591g0010 Nicotiana tabacum HOM05D004508 ORTHO05D005180 2.5e-153 545.8 372 71.5
PSO782G0229 Papaver somniferum HOM05D004508 ORTHO05D005180 2.5e-153 545.8 366 70.8
Hund14651 Selenicereus undatus HOM05D004508 ORTHO05D005180 2.5e-153 545.8 370 71.6
EL10Ac5g12616 Beta vulgaris HOM05D004508 ORTHO05D005180 1.3e-152 543.5 362 72.4
Medtr3g078637 Medicago truncatula HOM05D004508 ORTHO05D005180 1.3e-152 543.5 370 70.0
Ca_16218_v3 Cicer arietinum L. HOM05D004508 ORTHO05D005180 3.7e-152 542.0 370 70.0
Glyma.11G029800 Glycine max HOM05D004508 ORTHO05D005180 4.8e-152 541.6 370 69.7
Solyc08g079470.3 Solanum lycopersicum HOM05D004508 ORTHO05D005180 6.3e-152 541.2 369 71.0
Duzib205G1463 Durio zibethinus HOM05D004508 ORTHO05D005180 8.2e-152 540.8 372 71.2
Aa31LG11G5140 Aethionema arabicum HOM05D004508 ORTHO05D005180 1.8e-151 539.7 373 69.7
MSTRG.12061 Avicennia marina HOM05D004508 ORTHO05D005180 1.8e-151 539.7 372 71.0
Gohir.A12G221000 Gossypium hirsutum HOM05D004508 ORTHO05D005180 3.1e-151 538.9 374 69.8
SGA_v2.0_scaffold25G11118 Striga asiatica HOM05D004508 ORTHO05D005180 3.1e-151 538.9 360 70.6
Sed0020035 Sechium edule HOM05D004508 ORTHO05D005180 4.1e-151 538.5 366 71.6
Eucgr.D01989 Eucalyptus grandis HOM05D004508 ORTHO05D005180 6.9e-151 537.7 370 69.7
Potri.001G117700 Populus trichocarpa HOM05D004508 ORTHO05D005180 6.9e-151 537.7 370 71.1
Aa31LG9G10340 Aethionema arabicum HOM05D004508 ORTHO05D005180 9.0e-151 537.3 373 68.9
Gohir.D12G223300 Gossypium hirsutum HOM05D004508 ORTHO05D005180 9.0e-151 537.3 372 69.6
SGA_v2.0_scaffold146G36178 Striga asiatica HOM05D004508 ORTHO05D005180 1.2e-150 537.0 360 70.8
Thecc.03G261800 Theobroma cacao HOM05D004508 ORTHO05D005180 2.0e-150 536.2 370 70.8
Gorai.008G239600 Gossypium raimondii HOM05D004508 ORTHO05D005180 3.4e-150 535.4 372 69.4
BcaC04g21205 Brassica carinata HOM05D004508 ORTHO05D005180 1.3e-149 533.5 373 68.9
C09p34340 Brassica napus HOM05D004508 ORTHO05D005180 1.3e-149 533.5 373 68.9
BolC9t56277H Brassica oleracea HOM05D004508 ORTHO05D005180 1.3e-149 533.5 373 68.9
Phvul.002G060100 Phaseolus vulgaris HOM05D004508 ORTHO05D005180 1.7e-149 533.1 370 68.9
CAN.G630.82 Capsicum annuum HOM05D004508 ORTHO05D005180 2.9e-149 532.3 370 68.6
TWI60G0362 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 3.8e-149 531.9 366 71.3
Sp6g05370 Schrenkiella parvula HOM05D004508 ORTHO05D005180 5.0e-149 531.6 373 68.6
CsaV3_3G003200 Cucumis sativus L. HOM05D004508 ORTHO05D005180 1.4e-148 530.0 365 69.6
SalBow5G3960 Salvia bowleyana HOM05D004508 ORTHO05D005180 1.4e-148 530.0 375 68.8
SalBow5G2183 Salvia bowleyana HOM05D004508 ORTHO05D005180 2.5e-148 529.3 375 68.8
A09p27030 Brassica napus HOM05D004508 ORTHO05D005180 3.2e-148 528.9 373 68.4
BraA09t38274Z Brassica rapa HOM05D004508 ORTHO05D005180 3.2e-148 528.9 373 68.4
Aa31LG11G5170 Aethionema arabicum HOM05D004508 ORTHO05D005180 4.2e-148 528.5 385 66.5
Ah.12g058230 Amaranthus hybridus HOM05D004508 ORTHO05D005180 4.2e-148 528.5 368 68.2
CARHR254050 Cardamine hirsuta HOM05D004508 ORTHO05D005180 1.2e-147 526.9 373 68.1
Ciclev10020216m.g Citrus clementina HOM05D004508 ORTHO05D005180 1.6e-147 526.6 405 67.9
PGR031G2216 Punica granatum HOM05D004508 ORTHO05D005180 2.1e-147 526.2 366 69.4
Thhalv10028714m.g Eutrema salsugineum HOM05D004508 ORTHO05D005180 2.7e-147 525.8 373 67.8
TWI81G0341 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 2.7e-147 525.8 370 70.5
Sc07g0009440 Simmondsia chinensis HOM05D004508 ORTHO05D005180 7.9e-147 524.2 372 69.9
BraA03t12150Z Brassica rapa HOM05D004508 ORTHO05D005180 2.3e-146 522.7 373 67.6
BcaB01g01727 Brassica carinata HOM05D004508 ORTHO05D005180 8.7e-146 520.8 373 67.8
AT4G12130 Arabidopsis thaliana HOM05D004508 ORTHO05D005180 1.9e-145 519.6 373 67.3
BcaB01g02657 Brassica carinata HOM05D004508 ORTHO05D005180 1.9e-145 519.6 368 68.2
AL6G47050 Arabidopsis lyrata HOM05D004508 ORTHO05D005180 1.3e-144 516.9 373 66.8
Lj4g0011407 Lotus japonicus HOM05D004508 ORTHO05D005180 2.2e-144 516.2 369 68.8
Peaxi162Scf00271g00023 Petunia axillaris HOM05D004508 ORTHO05D005180 4.8e-144 515.0 377 69.5
PSO478G4546 Papaver somniferum HOM05D004508 ORTHO05D005180 6.3e-144 514.6 436 59.6
Carub.0006s3132 Capsella rubella HOM05D004508 ORTHO05D005180 1.4e-143 513.5 373 66.2
Gorai.003G166400 Gossypium raimondii HOM05D004508 ORTHO05D005180 3.4e-142 508.8 371 69.0
BolC3t15891H Brassica oleracea HOM05D004508 ORTHO05D005180 4.5e-142 508.4 368 67.1
BcaC01g04604 Brassica carinata HOM05D004508 ORTHO05D005180 5.9e-142 508.1 370 66.8
ECA234G2416 Erigeron canadensis HOM05D004508 ORTHO05D005180 2.2e-141 506.1 371 66.0
ECA246G1898 Erigeron canadensis HOM05D004508 ORTHO05D005180 6.5e-141 504.6 372 65.6
Lalb_Chr25g0283101 Lupinus albus HOM05D004508 ORTHO05D005180 1.4e-140 503.4 372 65.9
VMungo1215G0237 Vigna mungo HOM05D004508 ORTHO05D005180 8.8e-138 494.2 347 68.6
AUR62010510 Chenopodium quinoa HOM05D004508 ORTHO05D005180 2.2e-136 489.6 366 64.8
ATR0757G012 Amborella trichopoda HOM05D004508 ORTHO05D005180 5.9e-134 481.5 375 62.4
CDE04G2826 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 5.5e-132 474.9 362 62.7
Oeu016511.2 Olea europaea HOM05D004508 ORTHO05D005180 2.1e-131 473.0 398 60.8
Sabra01G0090400 Salix brachista HOM05D004508 ORTHO05D005180 3.9e-130 468.8 372 64.0
COL.COLO4_23880 Corchorus olitorius HOM05D004508 ORTHO05D005180 3.7e-128 462.2 371 63.3
C03p35810 Brassica napus HOM05D004508 ORTHO05D005180 1.4e-127 460.3 325 68.6
HPP92_014947 Vanilla planifolia HOM05D004508 ORTHO05D005180 3.5e-126 455.7 375 60.8
HPP92_014982 Vanilla planifolia HOM05D004508 ORTHO05D005180 3.5e-126 455.7 375 60.8
unitig_8.g3903 Utricularia gibba HOM05D004508 ORTHO05D005180 6.5e-125 451.4 362 61.0
Os06g0134800 Oryza sativa ssp. japonica HOM05D004508 ORTHO05D005180 1.8e-122 443.4 383 58.2
Nn2g12338 Nelumbo nucifera HOM05D004508 ORTHO05D005180 1.1e-121 440.7 291 72.2
Zm00001eb377920 Zea mays HOM05D004508 ORTHO05D005180 2.0e-121 439.9 379 58.6
Psat1g081320 Pisum sativum HOM05D004508 ORTHO05D005180 3.2e-116 422.5 272 72.4
Psat5g109880 Pisum sativum HOM05D004508 ORTHO05D005180 4.2e-116 422.2 272 72.4
SEGI_30484 Sequoiadendron giganteum HOM05D004508 ORTHO05D005180 4.2e-116 422.2 369 57.2
Pp3c2_10920 Physcomitrium patens HOM05D004508 ORTHO05D005180 1.1e-111 407.5 360 55.6
CiPaw.12G105000 Carya illinoinensis HOM05D004508 ORTHO05D005180 9.1e-111 404.4 366 58.7
AagrBONN_evm.TU.Sc2ySwM_344.736 Anthoceros agrestis HOM05D004508 ORTHO05D005180 1.2e-110 404.1 371 55.0
Dinv39078 Davidia involucrata HOM05D004508 ORTHO05D005180 6.5e-109 398.3 356 61.0
Glyma.01G212000 Glycine max HOM05D004508 ORTHO05D005180 6.5e-109 398.3 261 72.0
Pp3c14_15790 Physcomitrium patens HOM05D004508 ORTHO05D005180 3.2e-108 396.0 368 54.9
MBI04_g30221_MAGBIO Magnolia biondii HOM05D004508 ORTHO05D005180 5.5e-108 395.2 594 41.2
VMungo1215G2974 Vigna mungo HOM05D004508 ORTHO05D005180 6.1e-107 391.7 255 72.2
Mapoly0014s0047 Marchantia polymorpha HOM05D004508 ORTHO05D005180 1.4e-106 390.6 366 52.2
C07p28450 Brassica napus HOM05D004508 ORTHO05D005180 2.3e-106 389.8 271 67.5
AUR62017391 Chenopodium quinoa HOM05D004508 ORTHO05D005180 1.7e-104 383.6 237 76.4
SMO165G0061 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 2.2e-104 383.3 359 54.0
PSO017G0573 Papaver somniferum HOM05D004508 ORTHO05D005180 1.5e-100 370.5 252 69.8
A03p29560 Brassica napus HOM05D004508 ORTHO05D005180 5.2e-98 362.1 253 66.8
SMO230G0075 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 2.6e-97 359.8 359 48.7
BolC7t43385H Brassica oleracea HOM05D004508 ORTHO05D005180 1.3e-96 357.5 251 66.1
BcaC06g34438 Brassica carinata HOM05D004508 ORTHO05D005180 2.2e-96 356.7 252 65.9
AagrBONN_evm.TU.Sc2ySwM_344.739 Anthoceros agrestis HOM05D004508 ORTHO05D005180 1.6e-94 350.5 371 51.2
Migut.A00834 Erythranthe guttata HOM05D004508 ORTHO05D005180 2.3e-90 336.7 239 68.2
Oeu022318.1 Olea europaea HOM05D004508 ORTHO05D005180 3.1e-90 336.3 238 67.6
CBR_g46688 Chara braunii HOM05D004508 ORTHO05D005180 2.0e-89 333.6 393 44.8
Eucgr.D02019 Eucalyptus grandis HOM05D004508 ORTHO05D005180 4.7e-83 312.4 361 47.1
Gohir.D03G157900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 8.1e-83 311.6 239 65.3
MELO3C013985.2 Cucumis melo HOM05D004508 ORTHO05D005180 8.3e-80 301.6 195 72.8
TPR.G214 Trifolium pratense HOM05D004508 ORTHO05D005180 2.4e-66 256.9 160 77.5
Gohir.A03G011900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 5.3e-58 229.2 270 50.4
Lsat_1_v5_gn_3_76480 Lactuca sativa HOM05D004508 ORTHO05D005180 1.1e-52 211.5 203 55.7
vmacro17466 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 1.3e-51 208.0 135 77.8
AagrBONN_evm.TU.Sc2ySwM_344.731 Anthoceros agrestis HOM05D004508 ORTHO05D005180 7.6e-49 198.7 202 48.5
CSS0024785 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 9.3e-47 191.8 106 84.0
MELO3C021762.2 Cucumis melo HOM05D004508 ORTHO05D005180 4.2e-39 166.4 143 57.3
MCO07G558 Micromonas commoda HOM05D004508 ORTHO05D005180 1.1e-36 158.3 401 31.9
Nn8g40647 Nelumbo nucifera HOM05D004508 ORTHO05D005180 9.6e-36 155.2 176 51.7
VMungo1215G1224 Vigna mungo HOM05D004508 ORTHO05D005180 9.6e-36 155.2 119 63.0
Duzib084G0179 Durio zibethinus HOM05D004508 ORTHO05D005180 3.2e-31 140.2 150 49.3
PRCOL_00002067 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 1.6e-30 137.9 363 28.7
Cre10.g459000 Chlamydomonas reinhardtii HOM05D004508 ORTHO05D005180 2.2e-27 127.5 296 31.8
BolC6t40022H Brassica oleracea HOM05D004508 ORTHO05D005180 6.9e-26 122.5 99 59.6
Cfa023844 Carpinus fangiana HOM05D004508 ORTHO05D005180 2.1e-22 110.9 288 32.6
BcaC06g35234 Brassica carinata HOM05D004508 ORTHO05D005180 1.0e-21 108.6 70 64.3
BolC7t43387H Brassica oleracea HOM05D004508 ORTHO05D005180 1.3e-19 101.7 93 55.9
C03p35830 Brassica napus HOM05D004508 ORTHO05D005180 1.8e-18 97.8 93 53.8
C07p28470 Brassica napus HOM05D004508 ORTHO05D005180 2.0e-17 94.4 93 52.7
SGA_v2.0_scaffold120G32815 Striga asiatica HOM05D004508 ORTHO05D005180 2.0e-17 94.4 84 51.2
BolC3t15893H Brassica oleracea HOM05D004508 ORTHO05D005180 2.6e-09 67.4 54 55.6
BolC3t15892H Brassica oleracea HOM05D004508 ORTHO05D005180 3.5e-09 67.0 52 57.7
BcaC06g34436 Brassica carinata HOM05D004508 ORTHO05D005180 3.8e-08 63.5 55 52.7
CDE04G3100 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 1.1e-07 62.0 65 50.8


User provided reference genes

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