Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027132 Camellia sinensis var. sinensis HOM05D001358 ORTHO05D001154 1.5e-178 629.4 316 100.0
CSS0023252 Camellia sinensis var. sinensis HOM05D001358 ORTHO05D001154 3.3e-85 319.3 292 59.9
Actinidia14619 Actinidia chinensis HOM05D001358 ORTHO05D001154 1.9e-69 266.9 304 52.3
Dinv30170 Davidia involucrata HOM05D001358 ORTHO05D001154 8.4e-65 251.5 296 52.7
Actinidia15685 Actinidia chinensis HOM05D001358 ORTHO05D001154 2.6e-50 203.4 322 42.9
GSVIVG01035818001 Vitis vinifera HOM05D001358 ORTHO05D001154 1.2e-47 194.5 310 41.3
Hma1.2p1_0000F.1_g000630 Hydrangea macrophylla HOM05D001358 ORTHO05D001154 1.0e-38 164.9 291 39.5
Actinidia02742 Actinidia chinensis HOM05D001358 ORTHO05D001154 1.5e-37 161.0 264 42.0
Prupe.1G473800 Prunus persica HOM05D001358 ORTHO05D001154 9.7e-37 158.3 294 38.1
QL02p022416 Quercus lobata HOM05D001358 ORTHO05D001154 1.7e-33 147.5 284 36.3
TAR625G0494 Trochodendron aralioides HOM05D001358 ORTHO05D001154 2.9e-33 146.7 358 36.0
Cfa013173 Carpinus fangiana HOM05D001358 ORTHO05D001154 3.8e-33 146.4 244 43.4
Ciclev10007369m.g Citrus clementina HOM05D001358 ORTHO05D001154 4.7e-31 139.4 273 37.4
Nn2g11942 Nelumbo nucifera HOM05D001358 ORTHO05D001154 1.0e-30 138.3 228 39.9
RcHm_v2.0_Chr6g0298531 Rosa chinensis HOM05D001358 ORTHO05D001154 2.8e-28 130.2 296 36.1
Cc11_g01890 Coffea canephora HOM05D001358 ORTHO05D001154 3.7e-28 129.8 287 35.9
Nn8g39374 Nelumbo nucifera HOM05D001358 ORTHO05D001154 3.5e-26 123.2 249 36.9
Thecc.09G149500 Theobroma cacao HOM05D001358 ORTHO05D001154 1.0e-25 121.7 272 35.3
Duzib150G0799 Durio zibethinus HOM05D001358 ORTHO05D001154 8.5e-25 118.6 295 35.6
MD08G1145800 Malus domestica HOM05D001358 ORTHO05D001154 1.5e-24 117.9 299 36.5
Duzib187G1050 Durio zibethinus HOM05D001358 ORTHO05D001154 5.5e-24 115.9 270 35.2
Atru.chr7.2383 Acer truncatum HOM05D001358 ORTHO05D001154 7.2e-24 115.5 293 33.1
Manes.16G119900 Manihot esculenta HOM05D001358 ORTHO05D001154 9.4e-24 115.2 268 35.1
Oeu030207.1 Olea europaea HOM05D001358 ORTHO05D001154 1.6e-23 114.4 287 33.4
MSTRG.25850 Avicennia marina HOM05D001358 ORTHO05D001154 2.1e-23 114.0 238 35.7
Cpa.g.sc115.13 Carica papaya HOM05D001358 ORTHO05D001154 3.6e-23 113.2 288 33.7
MBI04_g10415_MAGBIO Magnolia biondii HOM05D001358 ORTHO05D001154 8.0e-23 112.1 226 38.5
Peaxi162Scf00341g00027 Petunia axillaris HOM05D001358 ORTHO05D001154 1.8e-22 110.9 298 31.9
COL.COLO4_23979 Corchorus olitorius HOM05D001358 ORTHO05D001154 8.8e-22 108.6 293 31.7
CAN.G98.30 Capsicum annuum HOM05D001358 ORTHO05D001154 1.5e-21 107.8 308 30.2
Sabra06G0196300 Salix brachista HOM05D001358 ORTHO05D001154 2.0e-21 107.5 231 37.7
FAN15G0716 Fragaria x ananassa HOM05D001358 ORTHO05D001154 2.6e-21 107.1 302 33.1
Potri.018G030000 Populus trichocarpa HOM05D001358 ORTHO05D001154 2.6e-21 107.1 229 34.5
FAN20G1969 Fragaria x ananassa HOM05D001358 ORTHO05D001154 3.4e-21 106.7 296 33.1
Gorai.013G110900 Gossypium raimondii HOM05D001358 ORTHO05D001154 9.8e-21 105.1 214 39.7
vmacro05192 Vaccinium macrocarpon HOM05D001358 ORTHO05D001154 1.3e-20 104.8 248 35.1
Potri.006G251200 Populus trichocarpa HOM05D001358 ORTHO05D001154 1.7e-20 104.4 232 35.8
TAR383G1052 Trochodendron aralioides HOM05D001358 ORTHO05D001154 1.7e-20 104.4 342 29.2
FvH4_2g29570 Fragaria vesca HOM05D001358 ORTHO05D001154 2.8e-20 103.6 302 32.5
Gohir.A02G112600 Gossypium hirsutum HOM05D001358 ORTHO05D001154 1.8e-19 100.9 214 38.8
Nitab4.5_0009006g0010 Nicotiana tabacum HOM05D001358 ORTHO05D001154 3.1e-19 100.1 291 32.6
Gohir.D03G060612 Gossypium hirsutum HOM05D001358 ORTHO05D001154 9.1e-19 98.6 214 39.3
Nitab4.5_0000151g0130 Nicotiana tabacum HOM05D001358 ORTHO05D001154 1.2e-18 98.2 290 31.4
arahy.Tifrunner.gnm1.ann1.79SPSS Arachis hypogaea HOM05D001358 ORTHO05D001154 3.5e-18 96.7 180 37.8
Gorai.013G241500 Gossypium raimondii HOM05D001358 ORTHO05D001154 4.5e-18 96.3 269 32.0
Ca_12933_v3 Cicer arietinum L. HOM05D001358 ORTHO05D001154 5.9e-18 95.9 287 26.8
MD15G1121200 Malus domestica HOM05D001358 ORTHO05D001154 1.0e-17 95.1 150 41.3
Sabra18G0031800 Salix brachista HOM05D001358 ORTHO05D001154 1.0e-17 95.1 216 33.8
Gohir.D13G211400 Gossypium hirsutum HOM05D001358 ORTHO05D001154 1.3e-17 94.7 269 31.6
FAN24G1377 Fragaria x ananassa HOM05D001358 ORTHO05D001154 1.7e-17 94.4 301 31.2
arahy.Tifrunner.gnm1.ann1.B88PIA Arachis hypogaea HOM05D001358 ORTHO05D001154 2.2e-17 94.0 180 37.8
Sopen08g021070 Solanum pennellii HOM05D001358 ORTHO05D001154 2.2e-17 94.0 296 29.1
Gohir.A13G206800 Gossypium hirsutum HOM05D001358 ORTHO05D001154 2.9e-17 93.6 269 31.6
PGR044G1345 Punica granatum HOM05D001358 ORTHO05D001154 5.0e-17 92.8 280 30.4
PGSC0003DMG400023147 Solanum tuberosum HOM05D001358 ORTHO05D001154 1.9e-16 90.9 298 31.2
PSO455G0156 Papaver somniferum HOM05D001358 ORTHO05D001154 4.2e-16 89.7 294 31.3
Solyc08g067150.4 Solanum lycopersicum HOM05D001358 ORTHO05D001154 5.5e-16 89.4 250 30.4
Rhsim07G0147800 Rhododendron simsii HOM05D001358 ORTHO05D001154 1.6e-15 87.8 185 36.2
CiPaw.01G243900 Carya illinoinensis HOM05D001358 ORTHO05D001154 6.1e-15 85.9 290 30.3
Aqoxy7G03750 Aquilegia oxysepala HOM05D001358 ORTHO05D001154 8.0e-15 85.5 218 34.4
Lalb_Chr24g0402241 Lupinus albus HOM05D001358 ORTHO05D001154 1.8e-14 84.3 212 33.0
PSO170G0612 Papaver somniferum HOM05D001358 ORTHO05D001154 4.0e-14 83.2 295 30.2
Dinv11622 Davidia involucrata HOM05D001358 ORTHO05D001154 1.5e-13 81.3 115 46.1
Lj5g0003410 Lotus japonicus HOM05D001358 ORTHO05D001154 9.8e-13 78.6 273 28.6
CDE03G0048 Ceratophyllum demersum HOM05D001358 ORTHO05D001154 1.3e-12 78.2 172 33.1
Medtr1g012020 Medicago truncatula HOM05D001358 ORTHO05D001154 1.7e-12 77.8 290 24.5
Ciclev10027242m.g Citrus clementina HOM05D001358 ORTHO05D001154 4.9e-12 76.3 173 36.4
Atru.chr1.3107 Acer truncatum HOM05D001358 ORTHO05D001154 1.4e-11 74.7 229 34.1
EL10As14g24086 Beta vulgaris HOM05D028699 ORTHO05D038985 1.8e-11 74.3 148 38.5
EL10Ac2g02597 Beta vulgaris HOM05D001358 ORTHO05D001154 2.4e-11 73.9 210 32.4
CDE01G0456 Ceratophyllum demersum HOM05D001358 ORTHO05D001154 3.1e-11 73.6 293 24.2
Migut.E01471 Erythranthe guttata HOM05D001358 ORTHO05D001154 1.6e-10 71.2 231 29.0
QL05p027578 Quercus lobata HOM05D001358 ORTHO05D001154 1.6e-10 71.2 137 38.7
Ciclev10004441m.g Citrus clementina HOM05D001358 ORTHO05D001154 2.0e-10 70.9 81 46.9
SGA_v2.0_scaffold169G38612 Striga asiatica HOM05D001358 ORTHO05D001154 1.0e-09 68.6 245 26.1
Psat6g029800 Pisum sativum HOM05D001358 ORTHO05D001154 1.7e-09 67.8 289 25.6
Hund25727 Selenicereus undatus HOM05D001358 ORTHO05D001154 2.3e-09 67.4 153 35.9
SGA_v2.0_scaffold4G02183 Striga asiatica HOM05D001358 ORTHO05D001154 2.3e-09 67.4 209 29.2
Dinv11533 Davidia involucrata HOM05D001358 ORTHO05D001154 2.9e-09 67.0 139 36.0
ECA246G3351 Erigeron canadensis HOM05D001358 ORTHO05D001154 3.8e-09 66.6 67 49.3
Sabra08G0118900 Salix brachista HOM05D001358 ORTHO05D001154 3.8e-09 66.6 72 50.0
CANSAT78G1873 Cannabis sativa HOM05D001358 ORTHO05D001154 6.6e-09 65.9 115 37.4
GSVIVG01021837001 Vitis vinifera HOM05D001358 ORTHO05D001154 8.6e-09 65.5 69 49.3
Lsat_1_v5_gn_5_31600 Lactuca sativa HOM05D001358 ORTHO05D001154 1.1e-08 65.1 249 26.5
TWI73G0388 Tripterygium wilfordii HOM05D001358 ORTHO05D001154 1.9e-08 64.3 97 41.2
Sc13g0004620 Simmondsia chinensis HOM05D001358 ORTHO05D001154 2.5e-08 63.9 206 26.7
TWI53G1527 Tripterygium wilfordii HOM05D001358 ORTHO05D001154 2.5e-08 63.9 139 33.8
Atru.chr4.2387 Acer truncatum HOM05D001358 ORTHO05D001154 7.2e-08 62.4 75 45.3
Atru.chr4.2410 Acer truncatum HOM05D001358 ORTHO05D001154 7.2e-08 62.4 75 45.3
Prupe.3G078800 Prunus persica HOM05D001358 ORTHO05D001154 7.2e-08 62.4 156 32.7
SHI00498 Sapria himalayana HOM05D001358 ORTHO05D001154 7.2e-08 62.4 191 30.4
Phvul.007G060500 Phaseolus vulgaris HOM05D001358 ORTHO05D001154 9.5e-08 62.0 98 39.8
Haze_11214 Corylus avellana HOM05D001358 ORTHO05D001154 1.2e-07 61.6 81 43.2
VMungo0720G2732 Vigna mungo HOM05D001358 ORTHO05D001154 1.2e-07 61.6 98 36.7
Duzib192G0517 Durio zibethinus HOM05D001358 ORTHO05D001154 1.6e-07 61.2 272 26.5
Glyma.20G149100 Glycine max HOM05D001358 ORTHO05D001154 1.6e-07 61.2 118 33.9
Potri.008G156100 Populus trichocarpa HOM05D001358 ORTHO05D001154 1.6e-07 61.2 114 36.8
Potri.010G083400 Populus trichocarpa HOM05D001358 ORTHO05D001154 1.6e-07 61.2 81 44.4
CiPaw.01G197300 Carya illinoinensis HOM05D001358 ORTHO05D001154 3.6e-07 60.1 198 31.8
Ca_24408_v3 Cicer arietinum L. HOM05D001358 ORTHO05D001154 3.6e-07 60.1 172 29.7
Glyma.10G245500 Glycine max HOM05D001358 ORTHO05D001154 4.7e-07 59.7 108 35.2
Glyma.11G006900 Glycine max HOM05D001358 ORTHO05D001154 4.7e-07 59.7 70 44.3
Manes.03G174900 Manihot esculenta HOM05D001358 ORTHO05D001154 4.7e-07 59.7 80 41.2
Aqoxy2G03440 Aquilegia oxysepala HOM05D001358 ORTHO05D001154 6.1e-07 59.3 69 46.4
THA.LOC104808570 Tarenaya hassleriana HOM05D001358 ORTHO05D001154 8.0e-07 58.9 53 52.8
TPR.G15672 Trifolium pratense HOM05D001358 ORTHO05D001154 8.0e-07 58.9 276 23.9
TWI09G1240 Tripterygium wilfordii HOM05D001358 ORTHO05D001154 8.0e-07 58.9 60 46.7
Cfa008460 Carpinus fangiana HOM05D001358 ORTHO05D001154 1.0e-06 58.5 168 31.0
THA.LOC104803136 Tarenaya hassleriana HOM05D001358 ORTHO05D001154 1.0e-06 58.5 53 52.8
VMungo1215G0998 Vigna mungo HOM05D001358 ORTHO05D001154 1.0e-06 58.5 70 44.3
Actinidia22364 Actinidia chinensis HOM05D001358 ORTHO05D001154 1.4e-06 58.2 72 44.4
CiPaw.02G122500 Carya illinoinensis HOM05D001358 ORTHO05D001154 1.4e-06 58.2 81 44.4
PGR142G0675 Punica granatum HOM05D001358 ORTHO05D001154 1.4e-06 58.2 54 51.9
QL06p001419 Quercus lobata HOM05D001358 ORTHO05D001154 1.4e-06 58.2 158 31.6
AUR62030662 Chenopodium quinoa HOM05D001358 ORTHO05D001154 1.8e-06 57.8 234 29.5
FAN17G3066 Fragaria x ananassa HOM05D001358 ORTHO05D001154 1.8e-06 57.8 55 50.9
Glyma.01G236300 Glycine max HOM05D001358 ORTHO05D001154 1.8e-06 57.8 70 42.9
Lj7A719T45 Lonicera japonica HOM05D001358 ORTHO05D001154 1.8e-06 57.8 170 32.4
Thecc.04G236400 Theobroma cacao HOM05D001358 ORTHO05D001154 1.8e-06 57.8 94 40.4
GSVIVG01018021001 Vitis vinifera HOM05D001358 ORTHO05D001154 1.8e-06 57.8 76 42.1
Phvul.002G043700 Phaseolus vulgaris HOM05D001358 ORTHO05D001154 2.3e-06 57.4 100 39.0
TPR.G37972 Trifolium pratense HOM05D001358 ORTHO05D001154 2.3e-06 57.4 54 53.7
Thhalv10020174m.g Eutrema salsugineum HOM05D001358 ORTHO05D001154 3.0e-06 57.0 169 33.7
Psat2g190640 Pisum sativum HOM05D001358 ORTHO05D001154 4.0e-06 56.6 137 32.1
arahy.Tifrunner.gnm1.ann1.SA7CU8 Arachis hypogaea HOM05D001358 ORTHO05D001154 5.2e-06 56.2 103 33.0
arahy.Tifrunner.gnm1.ann1.VMK2JT Arachis hypogaea HOM05D001358 ORTHO05D001154 5.2e-06 56.2 103 33.0
Carub.0003s2290 Capsella rubella HOM05D001358 ORTHO05D001154 5.2e-06 56.2 53 52.8
Lj6C610G1 Lonicera japonica HOM05D001358 ORTHO05D001154 5.2e-06 56.2 138 34.8
MD13G1197800 Malus domestica HOM05D001358 ORTHO05D001154 5.2e-06 56.2 83 39.8
Cpa.g.sc58.61 Carica papaya HOM05D001358 ORTHO05D001154 6.8e-06 55.8 62 46.8
SGA_v2.0_scaffold308G48126 Striga asiatica HOM05D001358 ORTHO05D001154 6.8e-06 55.8 122 32.8
C01p28370 Brassica napus HOM05D001358 ORTHO05D001154 8.9e-06 55.5 56 53.6
CsaV3_3G013010 Cucumis sativus L. HOM05D001358 ORTHO05D001154 8.9e-06 55.5 75 41.3
Thhalv10024624m.g Eutrema salsugineum HOM05D001358 ORTHO05D001154 8.9e-06 55.5 54 53.7
MD16G1197800 Malus domestica HOM05D001358 ORTHO05D001154 8.9e-06 55.5 93 38.7
TWI12G0268 Tripterygium wilfordii HOM05D001358 ORTHO05D001154 8.9e-06 55.5 150 30.7


User provided reference genes

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