Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027128 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 5.2e-36 153.7 69 100.0
CSS0037228 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 3.0e-15 84.7 37 97.3
CSS0040757 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 8.7e-15 83.2 36 97.2
CSS0020614 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 1.8e-12 75.5 39 84.6
CSS0036330 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 1.8e-12 75.5 39 84.6
CSS0047088 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 2.0e-11 72.0 39 79.5
Lalb_Chr24g0394261 Lupinus albus HOM05D004321 ORTHO05D004889 2.0e-11 72.0 43 69.8
Hma1.2p1_0624F.1_g191410 Hydrangea macrophylla HOM05D004321 ORTHO05D004889 7.6e-11 70.1 39 71.8
Hma1.2p1_1736F.1_g299920 Hydrangea macrophylla HOM05D004321 ORTHO05D004889 7.6e-11 70.1 39 71.8
CAN.G531.3 Capsicum annuum HOM05D004321 ORTHO05D004889 9.9e-11 69.7 31 87.1
Solyc06g060080.2 Solanum lycopersicum HOM05D004321 ORTHO05D004889 9.9e-11 69.7 31 87.1
PGSC0003DMG400011781 Solanum tuberosum HOM05D004321 ORTHO05D004889 9.9e-11 69.7 31 87.1
Atru.chr8.1939 Acer truncatum HOM05D004321 ORTHO05D004889 1.3e-10 69.3 39 71.8
CAN.G526.11 Capsicum annuum HOM05D004321 ORTHO05D004889 1.3e-10 69.3 36 77.8
HPP92_018999 Vanilla planifolia HOM05D004321 ORTHO05D004889 1.3e-10 69.3 39 66.7
Migut.D00865 Erythranthe guttata HOM05D004321 ORTHO05D004889 1.7e-10 68.9 39 74.4
Migut.H00021 Erythranthe guttata HOM05D004321 ORTHO05D004889 1.7e-10 68.9 39 74.4
FvH4_3g35530 Fragaria vesca HOM05D004321 ORTHO05D004889 1.7e-10 68.9 39 69.2
FAN11G1758 Fragaria x ananassa HOM05D004321 ORTHO05D004889 1.7e-10 68.9 39 69.2
FAN16G3546 Fragaria x ananassa HOM05D004321 ORTHO05D004889 1.7e-10 68.9 39 69.2
FAN21G2447 Fragaria x ananassa HOM05D004321 ORTHO05D004889 1.7e-10 68.9 39 69.2
vmacro20132 Vaccinium macrocarpon HOM05D004321 ORTHO05D004889 1.7e-10 68.9 39 71.8
Ciclev10013313m.g Citrus clementina HOM05D004321 ORTHO05D004889 2.2e-10 68.6 31 83.9
Ciclev10033281m.g Citrus clementina HOM05D004321 ORTHO05D004889 2.9e-10 68.2 31 80.6
FAN25G0680 Fragaria x ananassa HOM05D004321 ORTHO05D004889 2.9e-10 68.2 36 72.2
MD11G1143400 Malus domestica HOM05D004321 ORTHO05D004889 2.9e-10 68.2 43 62.8
PGR142G1540 Punica granatum HOM05D004321 ORTHO05D004889 2.9e-10 68.2 39 74.4
Nitab4.5_0001168g0080 Nicotiana tabacum HOM05D004321 ORTHO05D004889 3.8e-10 67.8 36 77.8
Nitab4.5_0002045g0030 Nicotiana tabacum HOM05D004321 ORTHO05D004889 3.8e-10 67.8 36 77.8
Solyc11g005050.2 Solanum lycopersicum HOM05D004321 ORTHO05D004889 3.8e-10 67.8 39 71.8
SGA_v2.0_scaffold199G41163 Striga asiatica HOM05D004321 ORTHO05D004889 3.8e-10 67.8 42 66.7
ClCG04G008340 Citrullus lanatus HOM05D004321 ORTHO05D004889 4.9e-10 67.4 39 66.7
DCAR_015188 Daucus carota HOM05D004321 ORTHO05D004889 4.9e-10 67.4 31 80.6
DCAR_027656 Daucus carota HOM05D004321 ORTHO05D004889 4.9e-10 67.4 31 80.6
Lalb_Chr14g0374991 Lupinus albus HOM05D004321 ORTHO05D004889 4.9e-10 67.4 39 71.8
TAR369G0439 Trochodendron aralioides HOM05D004321 ORTHO05D004889 4.9e-10 67.4 39 69.2
CAN.G711.6 Capsicum annuum HOM05D004321 ORTHO05D004889 6.4e-10 67.0 31 83.9
Ca_19194_v3 Cicer arietinum L. HOM05D004321 ORTHO05D004889 6.4e-10 67.0 36 77.8
Cc02_g08100 Coffea canephora HOM05D004321 ORTHO05D004889 6.4e-10 67.0 39 71.8
Lalb_Chr01g0003821 Lupinus albus HOM05D004321 ORTHO05D004889 6.4e-10 67.0 39 69.2
Lalb_Chr03g0026871 Lupinus albus HOM05D004321 ORTHO05D004889 6.4e-10 67.0 39 69.2
Potri.010G207600 Populus trichocarpa HOM05D004321 ORTHO05D004889 6.4e-10 67.0 39 69.2
Atru.chr12.498 Acer truncatum HOM05D004321 ORTHO05D004889 8.4e-10 66.6 39 66.7
EL10Ac7g15980 Beta vulgaris HOM05D004321 ORTHO05D004889 8.4e-10 66.6 38 68.4
Ca_01346_v3 Cicer arietinum L. HOM05D004321 ORTHO05D004889 8.4e-10 66.6 36 77.8
Ca_31212_v3 Cicer arietinum L. HOM05D004321 ORTHO05D004889 8.4e-10 66.6 36 77.8
Glyma.11G143200 Glycine max HOM05D004321 ORTHO05D004889 8.4e-10 66.6 39 71.8
Glyma.12G066300 Glycine max HOM05D004321 ORTHO05D004889 8.4e-10 66.6 39 71.8
Oeu033243.1 Olea europaea HOM05D004321 ORTHO05D004889 8.4e-10 66.6 39 71.8
Phvul.011G067300 Phaseolus vulgaris HOM05D004321 ORTHO05D004889 8.4e-10 66.6 31 83.9
Prupe.2G232300 Prunus persica HOM05D004321 ORTHO05D004889 8.4e-10 66.6 31 80.6
Hund04987 Selenicereus undatus HOM05D004321 ORTHO05D004889 8.4e-10 66.6 30 83.3
PGSC0003DMG402006052 Solanum tuberosum HOM05D004321 ORTHO05D004889 8.4e-10 66.6 31 83.9
Nitab4.5_0000322g0010 Nicotiana tabacum HOM05D004321 ORTHO05D004889 1.1e-09 66.2 39 71.8
Nitab4.5_0003240g0020 Nicotiana tabacum HOM05D004321 ORTHO05D004889 1.1e-09 66.2 39 71.8
Prupe.6G081200 Prunus persica HOM05D004321 ORTHO05D004889 1.1e-09 66.2 31 77.4
TAR633G0306 Trochodendron aralioides HOM05D004321 ORTHO05D004889 1.1e-09 66.2 39 69.2
unitig_37.g12533 Utricularia gibba HOM05D000061 ORTHO05D003487 1.1e-09 66.2 31 83.9
MSTRG.15649 Avicennia marina HOM05D004321 ORTHO05D004889 1.4e-09 65.9 40 70.0
CANSAT54G0658 Cannabis sativa HOM05D004321 ORTHO05D004889 1.4e-09 65.9 31 80.6
CsaV3_4G024800 Cucumis sativus L. HOM05D004321 ORTHO05D004889 1.4e-09 65.9 31 80.6
Glyma.13G333000 Glycine max HOM05D004321 ORTHO05D004889 1.4e-09 65.9 39 71.8
MD01G1124900 Malus domestica HOM05D004321 ORTHO05D004889 1.4e-09 65.9 31 80.6
Nn2g12809 Nelumbo nucifera HOM05D004321 ORTHO05D004889 1.4e-09 65.9 31 80.6
Sed0004580 Sechium edule HOM05D004321 ORTHO05D004889 1.4e-09 65.9 31 83.9
Sed0023983 Sechium edule HOM05D004321 ORTHO05D004889 1.4e-09 65.9 31 83.9
Sc12g0001610 Simmondsia chinensis HOM05D004321 ORTHO05D004889 1.4e-09 65.9 42 64.3
SGA_v2.0_scaffold104G30152 Striga asiatica HOM05D004321 ORTHO05D004889 1.4e-09 65.9 31 80.6
Glyma.15G041300 Glycine max HOM05D004321 ORTHO05D004889 1.9e-09 65.5 39 69.2
Lsat_1_v5_gn_5_168880 Lactuca sativa HOM05D004321 ORTHO05D004889 1.9e-09 65.5 39 69.2
Lj3g0011964 Lotus japonicus HOM05D004321 ORTHO05D004889 1.9e-09 65.5 39 69.2
MD03G1096900 Malus domestica HOM05D004321 ORTHO05D004889 1.9e-09 65.5 31 74.2
Potri.008G053000 Populus trichocarpa HOM05D004321 ORTHO05D004889 1.9e-09 65.5 39 66.7
MELO3C003114.2 Cucumis melo HOM05D004321 ORTHO05D004889 2.4e-09 65.1 29 86.2
TAR636G2028 Trochodendron aralioides HOM05D004321 ORTHO05D004889 2.4e-09 65.1 39 66.7
ATR0582G115 Amborella trichopoda HOM05D004321 ORTHO05D004889 3.2e-09 64.7 31 74.2
CiPaw.14G070600 Carya illinoinensis HOM05D004321 ORTHO05D004889 3.2e-09 64.7 31 77.4
Cc01_g12570 Coffea canephora HOM05D004321 ORTHO05D004889 3.2e-09 64.7 31 83.9
MBI14_g11678_MAGBIO Magnolia biondii HOM05D004321 ORTHO05D004889 3.2e-09 64.7 56 51.8
Oeu031979.1 Olea europaea HOM05D004321 ORTHO05D004889 3.2e-09 64.7 31 83.9
Psat0s128g0040 Pisum sativum HOM05D004321 ORTHO05D004889 3.2e-09 64.7 31 74.2
Psat7g219560 Pisum sativum HOM05D004321 ORTHO05D004889 3.2e-09 64.7 31 74.2
SalBow1G1058 Salvia bowleyana HOM05D004321 ORTHO05D004889 3.2e-09 64.7 39 66.7
SalBow1G8509 Salvia bowleyana HOM05D004321 ORTHO05D004889 3.2e-09 64.7 39 66.7
Hund04986 Selenicereus undatus HOM05D004321 ORTHO05D004889 3.2e-09 64.7 30 80.0
TWI75G1213 Tripterygium wilfordii HOM05D004321 ORTHO05D004889 3.2e-09 64.7 39 66.7
Haze_24057 Corylus avellana HOM05D004321 ORTHO05D004889 5.4e-09 63.9 39 69.2
CiPaw.13G097400 Carya illinoinensis HOM05D004321 ORTHO05D004889 7.1e-09 63.5 31 74.2
HanXRQChr02g0044521 Helianthus annuus HOM05D004321 ORTHO05D004889 7.1e-09 63.5 31 77.4
HanXRQChr05g0129691 Helianthus annuus HOM05D004321 ORTHO05D004889 7.1e-09 63.5 31 77.4
HanXRQChr05g0132661 Helianthus annuus HOM05D004321 ORTHO05D004889 7.1e-09 63.5 31 77.4
Ah.15g096870 Amaranthus hybridus HOM05D004321 ORTHO05D004889 9.3e-09 63.2 39 66.7
Ah.15g096900 Amaranthus hybridus HOM05D004321 ORTHO05D004889 9.3e-09 63.2 39 66.7
Medtr2g096370 Medicago truncatula HOM05D004321 ORTHO05D004889 9.3e-09 63.2 40 67.5
QL01p032862 Quercus lobata HOM05D004321 ORTHO05D004889 1.2e-08 62.8 31 74.2
RcHm_v2.0_Chr5g0063751 Rosa chinensis HOM05D004321 ORTHO05D004889 1.2e-08 62.8 31 71.0
Cpa.g.sc190.10 Carica papaya HOM05D004321 ORTHO05D004889 1.6e-08 62.4 39 61.5
Phvul.L002443 Phaseolus vulgaris HOM05D004321 ORTHO05D004889 2.1e-08 62.0 31 80.6
RcHm_v2.0_Chr7g0223231 Rosa chinensis HOM05D004321 ORTHO05D004889 2.1e-08 62.0 44 56.8
VMungo0720G0686 Vigna mungo HOM05D004321 ORTHO05D004889 2.7e-08 61.6 31 80.6
Aqoxy2G02059 Aquilegia oxysepala HOM05D004321 ORTHO05D004889 4.6e-08 60.8 31 74.2
Medtr4g063080 Medicago truncatula HOM05D004321 ORTHO05D004889 4.6e-08 60.8 31 74.2
PSO339G6107 Papaver somniferum HOM05D004321 ORTHO05D004889 6.0e-08 60.5 36 69.4
Sabra08G0038100 Salix brachista HOM05D004321 ORTHO05D004889 6.0e-08 60.5 39 61.5
Zm00001eb355680 Zea mays HOM05D004321 ORTHO05D004889 6.0e-08 60.5 31 71.0
Aa31LG4G15480 Aethionema arabicum HOM05D004321 ORTHO05D004889 7.9e-08 60.1 39 64.1
Aa31sc23G280 Aethionema arabicum HOM05D004321 ORTHO05D004889 7.9e-08 60.1 39 64.1
HanXRQChr05g0143771 Helianthus annuus HOM05D004321 ORTHO05D004889 7.9e-08 60.1 31 74.2
AL5G25260 Arabidopsis lyrata HOM05D004321 ORTHO05D004889 1.8e-07 58.9 39 61.5
AL8G36130 Arabidopsis lyrata HOM05D004321 ORTHO05D004889 1.8e-07 58.9 39 61.5
AT3G46430 Arabidopsis thaliana HOM05D004321 ORTHO05D004889 1.8e-07 58.9 39 61.5
AT5G59613 Arabidopsis thaliana HOM05D004321 ORTHO05D004889 1.8e-07 58.9 39 61.5
CARHR154850 Cardamine hirsuta HOM05D004321 ORTHO05D004889 1.8e-07 58.9 39 61.5
Thhalv10015813m.g Eutrema salsugineum HOM05D004321 ORTHO05D004889 1.8e-07 58.9 39 61.5
Manes.11G132700 Manihot esculenta HOM05D004321 ORTHO05D004889 1.8e-07 58.9 38 65.8
RcHm_v2.0_Chr1g0360701 Rosa chinensis HOM05D004321 ORTHO05D004889 1.8e-07 58.9 29 72.4
Peaxi162Scf01003g00014 Petunia axillaris HOM05D004321 ORTHO05D004889 2.3e-07 58.5 31 77.4
Thecc.09G325400 Theobroma cacao HOM05D004321 ORTHO05D004889 2.3e-07 58.5 30 73.3
BcaB01g04562 Brassica carinata HOM05D004321 ORTHO05D004889 3.0e-07 58.2 31 71.0
A02p07010 Brassica napus HOM05D004321 ORTHO05D004889 3.0e-07 58.2 31 71.0
BraA02t05781Z Brassica rapa HOM05D004321 ORTHO05D004889 3.0e-07 58.2 31 71.0
CARHR273120 Cardamine hirsuta HOM05D004321 ORTHO05D004889 3.0e-07 58.2 39 59.0
arahy.Tifrunner.gnm1.ann1.CZHF5K Arachis hypogaea HOM05D004321 ORTHO05D004889 3.9e-07 57.8 39 61.5
arahy.Tifrunner.gnm1.ann1.NFV9ZK Arachis hypogaea HOM05D004321 ORTHO05D004889 3.9e-07 57.8 39 61.5
COL.COLO4_18474 Corchorus olitorius HOM05D004321 ORTHO05D004889 3.9e-07 57.8 30 73.3
BcaB08g36233 Brassica carinata HOM05D004321 ORTHO05D004889 6.7e-07 57.0 31 71.0
BcaB08g36235 Brassica carinata HOM05D004321 ORTHO05D004889 6.7e-07 57.0 31 71.0
BcaC01g06508 Brassica carinata HOM05D004321 ORTHO05D004889 6.7e-07 57.0 31 71.0
BcaC03g13996 Brassica carinata HOM05D004321 ORTHO05D004889 6.7e-07 57.0 31 71.0
BcaC04g19749 Brassica carinata HOM05D004321 ORTHO05D004889 6.7e-07 57.0 31 71.0
A03p11570 Brassica napus HOM05D004321 ORTHO05D004889 6.7e-07 57.0 31 71.0
A10p16870 Brassica napus HOM05D004321 ORTHO05D004889 6.7e-07 57.0 31 71.0
C02p12350 Brassica napus HOM05D004321 ORTHO05D004889 6.7e-07 57.0 31 71.0
C03p13450 Brassica napus HOM05D004321 ORTHO05D004889 6.7e-07 57.0 31 71.0
C09p52020 Brassica napus HOM05D004321 ORTHO05D004889 6.7e-07 57.0 31 71.0
BolC2t07335H Brassica oleracea HOM05D004321 ORTHO05D004889 6.7e-07 57.0 31 71.0
BolC3t13802H Brassica oleracea HOM05D004321 ORTHO05D004889 6.7e-07 57.0 31 71.0
BolC9t58064H Brassica oleracea HOM05D004321 ORTHO05D004889 6.7e-07 57.0 31 71.0
BraA03t10470Z Brassica rapa HOM05D004321 ORTHO05D004889 6.7e-07 57.0 31 71.0
BraA10t43766Z Brassica rapa HOM05D004321 ORTHO05D004889 6.7e-07 57.0 31 71.0
Carub.0005s1223 Capsella rubella HOM05D004321 ORTHO05D004889 6.7e-07 57.0 31 71.0
Carub.0008s2029 Capsella rubella HOM05D004321 ORTHO05D004889 6.7e-07 57.0 31 71.0
Manes.04G032700 Manihot esculenta HOM05D004321 ORTHO05D004889 6.7e-07 57.0 30 73.3
Sp5g15250 Schrenkiella parvula HOM05D004321 ORTHO05D004889 6.7e-07 57.0 31 71.0
Sp6g21320 Schrenkiella parvula HOM05D004321 ORTHO05D004889 6.7e-07 57.0 31 71.0
THA.LOC104814874 Tarenaya hassleriana HOM05D004321 ORTHO05D004889 6.7e-07 57.0 31 67.7
Thhalv10003016m.g Eutrema salsugineum HOM05D004321 ORTHO05D004889 8.7e-07 56.6 39 59.0
Gohir.A05G097300 Gossypium hirsutum HOM05D004321 ORTHO05D004889 8.7e-07 56.6 30 73.3
Gohir.A05G097400 Gossypium hirsutum HOM05D004321 ORTHO05D004889 8.7e-07 56.6 30 73.3
Gohir.D03G128000 Gossypium hirsutum HOM05D004321 ORTHO05D004889 8.7e-07 56.6 30 73.3
Gohir.D05G097400 Gossypium hirsutum HOM05D004321 ORTHO05D004889 8.7e-07 56.6 30 73.3
Gohir.D05G097500 Gossypium hirsutum HOM05D004321 ORTHO05D004889 8.7e-07 56.6 30 73.3
Gorai.003G134700 Gossypium raimondii HOM05D004321 ORTHO05D004889 8.7e-07 56.6 30 73.3
Gorai.009G101000 Gossypium raimondii HOM05D004321 ORTHO05D004889 8.7e-07 56.6 30 73.3
Gorai.009G101100 Gossypium raimondii HOM05D004321 ORTHO05D004889 8.7e-07 56.6 30 73.3
Os03g0606200 Oryza sativa ssp. japonica HOM05D004321 ORTHO05D004889 8.7e-07 56.6 29 72.4
THA.LOC109116048 Tarenaya hassleriana HOM05D004321 ORTHO05D004889 8.7e-07 56.6 31 64.5
Gohir.A03G040001 Gossypium hirsutum HOM05D004321 ORTHO05D004889 1.9e-06 55.5 30 70.0
Zm00001eb022520 Zea mays HOM05D003081 ORTHO05D004889 7.4e-06 53.5 31 64.5
Zm00001eb120950 Zea mays HOM05D004321 ORTHO05D004889 7.4e-06 53.5 31 64.5


User provided reference genes

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