Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027113 Camellia sinensis var. sinensis HOM05D020675 ORTHO05D000042 1.5e-83 312.8 153 100.0
CSS0024463 Camellia sinensis var. sinensis HOM05D020675 ORTHO05D000042 4.8e-74 281.2 153 92.2
CSS0010565 Camellia sinensis var. sinensis HOM05D020675 ORTHO05D000042 1.3e-66 256.5 154 85.7
CSS0046213 Camellia sinensis var. sinensis HOM05D020675 ORTHO05D000042 1.4e-65 253.1 154 85.1
CSS0027443 Camellia sinensis var. sinensis HOM05D020675 ORTHO05D000042 3.8e-63 245.0 149 81.9
CSS0024218 Camellia sinensis var. sinensis HOM05D000092 ORTHO05D000042 4.7e-61 238.0 191 68.1
CSS0037593 Camellia sinensis var. sinensis HOM05D000092 ORTHO05D000042 6.7e-60 234.2 187 68.4
CSS0018501 Camellia sinensis var. sinensis HOM05D020675 ORTHO05D000042 1.5e-59 233.0 150 80.0
RhsimUnG0018200 Rhododendron simsii HOM05D000092 ORTHO05D000042 1.1e-33 147.1 189 46.6
Rhsim04G0054300 Rhododendron simsii HOM05D000092 ORTHO05D000042 1.1e-30 137.1 175 48.6
Rhsim04G0055200 Rhododendron simsii HOM05D000092 ORTHO05D000042 4.7e-29 131.7 179 45.3
Rhsim04G0053600 Rhododendron simsii HOM05D000092 ORTHO05D000042 6.2e-29 131.3 179 45.3
Rhsim04G0054600 Rhododendron simsii HOM05D000092 ORTHO05D000042 8.0e-29 131.0 179 45.3
Rhsim04G0054000 Rhododendron simsii HOM05D000092 ORTHO05D000042 1.0e-28 130.6 167 47.3
Rhsim04G0053900 Rhododendron simsii HOM05D000092 ORTHO05D000042 1.8e-28 129.8 180 45.0
Rhsim04G0055600 Rhododendron simsii HOM05D000092 ORTHO05D000042 3.4e-27 125.6 180 43.3
Dinv01598 Davidia involucrata HOM05D000092 ORTHO05D000042 4.3e-22 108.6 169 37.9
vmacro09349 Vaccinium macrocarpon HOM05D000092 ORTHO05D000042 2.8e-21 105.9 168 41.7
Dinv03248 Davidia involucrata HOM05D000092 ORTHO05D000042 2.0e-19 99.8 187 34.2
Dinv05244 Davidia involucrata HOM05D000092 ORTHO05D000042 5.8e-19 98.2 173 33.5
Dinv40988 Davidia involucrata HOM05D000092 ORTHO05D000042 5.8e-19 98.2 169 35.5
Dinv03240 Davidia involucrata HOM05D000092 ORTHO05D000042 2.2e-18 96.3 183 32.8
Dinv05255 Davidia involucrata HOM05D000092 ORTHO05D000042 2.2e-18 96.3 185 32.4
Dinv03237 Davidia involucrata HOM05D000092 ORTHO05D000042 6.4e-18 94.7 183 32.2
Dinv05441 Davidia involucrata HOM05D000092 ORTHO05D000042 6.4e-18 94.7 162 34.0
Dinv03245 Davidia involucrata HOM05D000092 ORTHO05D000042 2.4e-17 92.8 186 30.6
Dinv03242 Davidia involucrata HOM05D000092 ORTHO05D000042 5.4e-17 91.7 162 34.0
Dinv18880 Davidia involucrata HOM05D000092 ORTHO05D000042 5.6e-14 81.6 133 34.6
Dinv20729 Davidia involucrata HOM05D000092 ORTHO05D000042 1.2e-13 80.5 121 38.8
Dinv20556 Davidia involucrata HOM05D000092 ORTHO05D000042 2.1e-13 79.7 171 31.0
Dinv20740 Davidia involucrata HOM05D000092 ORTHO05D000042 2.1e-13 79.7 171 31.0
Dinv20558 Davidia involucrata HOM05D000092 ORTHO05D000042 1.7e-10 70.1 169 29.6
Dinv20738 Davidia involucrata HOM05D000092 ORTHO05D000042 1.7e-10 70.1 169 29.6
Dinv03246 Davidia involucrata HOM05D000092 ORTHO05D000042 1.1e-09 67.4 163 30.1
Dinv40446 Davidia involucrata HOM05D000092 ORTHO05D000042 2.4e-09 66.2 73 45.2
Dinv04828 Davidia involucrata HOM05D000092 ORTHO05D000042 4.1e-09 65.5 172 28.5
Manes.02G215000 Manihot esculenta HOM05D000092 ORTHO05D000042 4.1e-09 65.5 99 39.4
Manes.02G215120 Manihot esculenta HOM05D000092 ORTHO05D000042 4.1e-09 65.5 99 38.4
Manes.02G215445 Manihot esculenta HOM05D000092 ORTHO05D000042 4.1e-09 65.5 99 38.4
Manes.02G215615 Manihot esculenta HOM05D000092 ORTHO05D000042 4.1e-09 65.5 99 38.4
Dinv07584 Davidia involucrata HOM05D000092 ORTHO05D000042 5.4e-09 65.1 156 29.5
Dinv12837 Davidia involucrata HOM05D000092 ORTHO05D000042 5.4e-09 65.1 77 44.2
Manes.02G215405 Manihot esculenta HOM05D000092 ORTHO05D000042 5.4e-09 65.1 99 37.4
Thecc.05G211400 Theobroma cacao HOM05D000092 ORTHO05D000042 5.4e-09 65.1 73 43.8
VMungo0331G0195 Vigna mungo HOM05D000092 ORTHO05D000042 5.4e-09 65.1 82 36.6
Manes.07G062324 Manihot esculenta HOM05D000092 ORTHO05D000042 7.1e-09 64.7 99 37.4
Manes.02G215325 Manihot esculenta HOM05D000092 ORTHO05D000042 9.2e-09 64.3 99 37.4
Manes.02G215400 Manihot esculenta HOM05D000092 ORTHO05D000042 9.2e-09 64.3 99 38.4
Manes.02G215420 Manihot esculenta HOM05D000092 ORTHO05D000042 9.2e-09 64.3 99 38.4
Manes.02G215430 Manihot esculenta HOM05D000092 ORTHO05D000042 9.2e-09 64.3 99 38.4
Manes.02G215700 Manihot esculenta HOM05D000092 ORTHO05D000042 9.2e-09 64.3 99 37.4
Manes.07G062348 Manihot esculenta HOM05D000092 ORTHO05D000042 9.2e-09 64.3 99 38.4
Potri.005G061860 Populus trichocarpa HOM05D000092 ORTHO05D000042 9.2e-09 64.3 73 43.8
Glyma.07G065000 Glycine max HOM05D000092 ORTHO05D000042 1.2e-08 63.9 68 41.2
Manes.02G215425 Manihot esculenta HOM05D000092 ORTHO05D000042 1.2e-08 63.9 99 37.4
Manes.07G062340 Manihot esculenta HOM05D000092 ORTHO05D000042 2.1e-08 63.2 92 39.1
Manes.07G062404 Manihot esculenta HOM05D000092 ORTHO05D000042 2.1e-08 63.2 92 39.1
Thecc.05G297500 Theobroma cacao HOM05D000092 ORTHO05D000042 2.7e-08 62.8 96 33.3
COL.COLO4_32833 Corchorus olitorius HOM05D000092 ORTHO05D000042 3.5e-08 62.4 76 42.1
Dinv07585 Davidia involucrata HOM05D000092 ORTHO05D000042 3.5e-08 62.4 99 40.4
Sabra13G0028000 Salix brachista HOM05D000092 ORTHO05D000042 3.5e-08 62.4 101 37.6
Manes.07G062308 Manihot esculenta HOM05D000092 ORTHO05D000042 4.6e-08 62.0 92 39.1
Manes.07G063100 Manihot esculenta HOM05D000092 ORTHO05D000042 4.6e-08 62.0 92 39.1
Dinv07579 Davidia involucrata HOM05D000092 ORTHO05D000042 6.0e-08 61.6 89 40.4
PGR042G3726 Punica granatum HOM05D000092 ORTHO05D000042 6.0e-08 61.6 72 41.7
Dinv12839 Davidia involucrata HOM05D000092 ORTHO05D000042 7.8e-08 61.2 64 46.9
Manes.07G060700 Manihot esculenta HOM05D000092 ORTHO05D000042 7.8e-08 61.2 80 37.5
Manes.07G060708 Manihot esculenta HOM05D000092 ORTHO05D000042 7.8e-08 61.2 99 36.4
VMungo0166G0001 Vigna mungo HOM05D000092 ORTHO05D000042 7.8e-08 61.2 66 40.9
Dinv07581 Davidia involucrata HOM05D000092 ORTHO05D000042 1.0e-07 60.8 77 45.5
Manes.07G060300 Manihot esculenta HOM05D000092 ORTHO05D000042 1.0e-07 60.8 71 43.7
Manes.07G061500 Manihot esculenta HOM05D000092 ORTHO05D000042 1.0e-07 60.8 92 38.0
VMungo0331G0510 Vigna mungo HOM05D000092 ORTHO05D000042 1.0e-07 60.8 72 38.9
Dinv18646 Davidia involucrata HOM05D000092 ORTHO05D000042 1.3e-07 60.5 100 35.0
Dinv26261 Davidia involucrata HOM05D000092 ORTHO05D000042 1.3e-07 60.5 100 35.0
QL03p003203 Quercus lobata HOM05D000092 ORTHO05D000042 1.3e-07 60.5 75 40.0
Dinv02874 Davidia involucrata HOM05D000092 ORTHO05D000042 2.3e-07 59.7 72 40.3
Glyma.07G065600 Glycine max HOM05D000092 ORTHO05D000042 2.3e-07 59.7 68 38.2
Potri.005G042400 Populus trichocarpa HOM05D000092 ORTHO05D000042 2.3e-07 59.7 94 39.4
Potri.013G015900 Populus trichocarpa HOM05D000092 ORTHO05D000042 2.3e-07 59.7 118 34.7
Lalb_Chr01g0006961 Lupinus albus HOM05D000092 ORTHO05D000042 3.0e-07 59.3 117 33.3
Manes.07G061980 Manihot esculenta HOM05D000092 ORTHO05D000042 3.0e-07 59.3 71 42.3
VMungo0331G1299 Vigna mungo HOM05D000092 ORTHO05D000042 3.0e-07 59.3 87 36.8
GSVIVG01023548001 Vitis vinifera HOM05D000092 ORTHO05D000042 3.0e-07 59.3 63 49.2
arahy.Tifrunner.gnm1.ann1.TXZ93S Arachis hypogaea HOM05D000092 ORTHO05D000042 3.9e-07 58.9 96 36.5
CiPaw.15G126100 Carya illinoinensis HOM05D000092 ORTHO05D000042 3.9e-07 58.9 81 34.6
QL03p002957 Quercus lobata HOM05D000092 ORTHO05D000042 3.9e-07 58.9 75 41.3
Dinv36125 Davidia involucrata HOM05D000092 ORTHO05D000042 5.1e-07 58.5 68 42.6
Duzib192G0626 Durio zibethinus HOM05D000092 ORTHO05D000042 5.1e-07 58.5 98 36.7
Phvul.010G104500 Phaseolus vulgaris HOM05D000092 ORTHO05D000042 5.1e-07 58.5 143 29.4
QL01p042119 Quercus lobata HOM05D000092 ORTHO05D000042 5.1e-07 58.5 137 29.9
VMungo0331G0485 Vigna mungo HOM05D000092 ORTHO05D000042 5.1e-07 58.5 95 31.6
arahy.Tifrunner.gnm1.ann1.H49T8T Arachis hypogaea HOM05D000092 ORTHO05D000042 6.6e-07 58.2 75 37.3
Glyma.07G063300 Glycine max HOM05D000092 ORTHO05D000042 6.6e-07 58.2 68 39.7
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 6.6e-07 58.2 71 45.1
GSVIVG01023566001 Vitis vinifera HOM05D000092 ORTHO05D000042 6.6e-07 58.2 63 49.2
Ca_27735_v3 Cicer arietinum L. HOM05D000092 ORTHO05D000042 8.6e-07 57.8 71 39.4
Glyma.U031914 Glycine max HOM05D000092 ORTHO05D000042 8.6e-07 57.8 68 42.6
Lj1g0024619 Lotus japonicus HOM05D000092 ORTHO05D000042 8.6e-07 57.8 91 33.0
Potri.013G027300 Populus trichocarpa HOM05D000092 ORTHO05D000042 8.6e-07 57.8 71 45.1
Sabra13G0018000 Salix brachista HOM05D000092 ORTHO05D000042 8.6e-07 57.8 119 32.8
arahy.Tifrunner.gnm1.ann1.BPD95K Arachis hypogaea HOM05D000092 ORTHO05D000042 1.1e-06 57.4 96 36.5
CiPaw.08G175500 Carya illinoinensis HOM05D000092 ORTHO05D000042 1.1e-06 57.4 100 30.0
Eucgr.L00094 Eucalyptus grandis HOM05D000092 ORTHO05D000042 1.1e-06 57.4 74 39.2
QL03p001771 Quercus lobata HOM05D000092 ORTHO05D000042 1.1e-06 57.4 97 35.1
QL03p002457 Quercus lobata HOM05D000092 ORTHO05D000042 1.1e-06 57.4 66 40.9
Sabra13G0013900 Salix brachista HOM05D000092 ORTHO05D000042 1.1e-06 57.4 71 43.7
VMungo0331G0948 Vigna mungo HOM05D000092 ORTHO05D000042 1.1e-06 57.4 69 39.1
VMungo0331G1995 Vigna mungo HOM05D000092 ORTHO05D000042 1.1e-06 57.4 67 40.3
Duzib177G0159 Durio zibethinus HOM05D000092 ORTHO05D000042 1.5e-06 57.0 89 41.6
Potri.013G015700 Populus trichocarpa HOM05D000092 ORTHO05D000042 1.5e-06 57.0 98 37.8
PGR042G0832 Punica granatum HOM05D000092 ORTHO05D000042 1.5e-06 57.0 67 41.8
QL01p042065 Quercus lobata HOM05D000092 ORTHO05D000042 1.5e-06 57.0 137 29.2
QL03p002643 Quercus lobata HOM05D000092 ORTHO05D000042 1.5e-06 57.0 94 35.1
Sabra13G0018500 Salix brachista HOM05D000092 ORTHO05D000042 1.5e-06 57.0 113 33.6
Eucgr.L00073 Eucalyptus grandis HOM05D000092 ORTHO05D000042 1.9e-06 56.6 105 31.4
Manes.07G062356 Manihot esculenta HOM05D000092 ORTHO05D000042 1.9e-06 56.6 92 37.0
Psat5g221920 Pisum sativum HOM05D000092 ORTHO05D000042 1.9e-06 56.6 163 28.8
Sabra13G0018700 Salix brachista HOM05D000092 ORTHO05D000042 1.9e-06 56.6 120 33.3
COL.COLO4_20151 Corchorus olitorius HOM05D000092 ORTHO05D000042 2.5e-06 56.2 81 35.8
Dinv10937 Davidia involucrata HOM05D000092 ORTHO05D000042 2.5e-06 56.2 79 39.2
Eucgr.G00878 Eucalyptus grandis HOM05D000092 ORTHO05D000042 2.5e-06 56.2 70 44.3
Eucgr.G00886 Eucalyptus grandis HOM05D000092 ORTHO05D000042 2.5e-06 56.2 64 37.5
Gorai.011G294500 Gossypium raimondii HOM05D000092 ORTHO05D000042 2.5e-06 56.2 98 32.7
Manes.03G060801 Manihot esculenta HOM05D000092 ORTHO05D000042 2.5e-06 56.2 85 38.8
Medtr1g006975 Medicago truncatula HOM05D000092 ORTHO05D000042 2.5e-06 56.2 115 30.4
Medtr7g088640 Medicago truncatula HOM05D000092 ORTHO05D000042 2.5e-06 56.2 73 38.4
Potri.005G041101 Populus trichocarpa HOM05D000092 ORTHO05D000042 2.5e-06 56.2 120 33.3
QL10p064757 Quercus lobata HOM05D000092 ORTHO05D000042 2.5e-06 56.2 66 42.4
Sabra13G0014100 Salix brachista HOM05D000092 ORTHO05D000042 2.5e-06 56.2 120 32.5
Sabra13G0015000 Salix brachista HOM05D000092 ORTHO05D000042 2.5e-06 56.2 71 43.7
Sabra13G0019200 Salix brachista HOM05D000092 ORTHO05D000042 2.5e-06 56.2 71 43.7
Duzib177G0490 Durio zibethinus HOM05D000092 ORTHO05D000042 3.3e-06 55.8 89 39.3
Phvul.008G070800 Phaseolus vulgaris HOM05D000092 ORTHO05D000042 3.3e-06 55.8 78 33.3
Psat5g221880 Pisum sativum HOM05D000092 ORTHO05D000042 3.3e-06 55.8 163 28.8
Potri.005G062130 Populus trichocarpa HOM05D000092 ORTHO05D000042 3.3e-06 55.8 103 32.0
QL03p003358 Quercus lobata HOM05D000092 ORTHO05D000042 3.3e-06 55.8 72 37.5
RcHm_v2.0_Chr5g0080281 Rosa chinensis HOM05D000092 ORTHO05D000042 3.3e-06 55.8 104 31.7
Hund21498 Selenicereus undatus HOM05D000092 ORTHO05D015437 3.3e-06 55.8 74 36.5
Thecc.05G318100 Theobroma cacao HOM05D000467 ORTHO05D000379 3.3e-06 55.8 152 25.7
GSVIVG01036191001 Vitis vinifera HOM05D000092 ORTHO05D000042 3.3e-06 55.8 73 42.5
Actinidia38186 Actinidia chinensis HOM05D000092 ORTHO05D000042 4.3e-06 55.5 90 35.6
arahy.Tifrunner.gnm1.ann1.9D80V8 Arachis hypogaea HOM05D000092 ORTHO05D000042 4.3e-06 55.5 69 40.6
Dinv22271 Davidia involucrata HOM05D000092 ORTHO05D000042 4.3e-06 55.5 148 31.1
Duzib177G0387 Durio zibethinus HOM05D000092 ORTHO05D000042 4.3e-06 55.5 89 39.3
Duzib177G0893 Durio zibethinus HOM05D000092 ORTHO05D000042 4.3e-06 55.5 76 42.1
Duzib192G0564 Durio zibethinus HOM05D000092 ORTHO05D000042 4.3e-06 55.5 94 36.2
Eucgr.G01355 Eucalyptus grandis HOM05D000092 ORTHO05D000042 4.3e-06 55.5 67 46.3
FAN11G3620 Fragaria x ananassa HOM05D000092 ORTHO05D000042 4.3e-06 55.5 99 34.3
Glyma.07G065500 Glycine max HOM05D000092 ORTHO05D000042 4.3e-06 55.5 68 39.7
Glyma.U031414 Glycine max HOM05D000092 ORTHO05D000042 4.3e-06 55.5 152 28.9
Phvul.010G091100 Phaseolus vulgaris HOM05D000092 ORTHO05D000042 4.3e-06 55.5 118 27.1
PGR042G3045 Punica granatum HOM05D000092 ORTHO05D000042 4.3e-06 55.5 72 40.3
QL03p002023 Quercus lobata HOM05D000092 ORTHO05D000042 4.3e-06 55.5 68 39.7
Cfa006504 Carpinus fangiana HOM05D000092 ORTHO05D000042 5.6e-06 55.1 66 36.4
Gorai.011G264500 Gossypium raimondii HOM05D000092 ORTHO05D000042 5.6e-06 55.1 97 29.9
QL03p001366 Quercus lobata HOM05D000092 ORTHO05D000042 5.6e-06 55.1 73 42.5
Atru.chr2.1458 Acer truncatum HOM05D000092 ORTHO05D000042 7.3e-06 54.7 118 32.2
arahy.Tifrunner.gnm1.ann1.IBP7G5 Arachis hypogaea HOM05D000092 ORTHO05D000042 7.3e-06 54.7 76 36.8
Glyma.06G256300 Glycine max HOM05D000092 ORTHO05D000042 7.3e-06 54.7 117 34.2
Manes.08G163511 Manihot esculenta HOM05D000092 ORTHO05D000042 7.3e-06 54.7 72 37.5
Manes.10G028600 Manihot esculenta HOM05D000092 ORTHO05D000042 7.3e-06 54.7 67 38.8
Psat4g157640 Pisum sativum HOM05D000092 ORTHO05D000042 7.3e-06 54.7 66 39.4
PGR031G3667 Punica granatum HOM05D000092 ORTHO05D000042 7.3e-06 54.7 74 40.5
Sabra13G0018100 Salix brachista HOM05D000092 ORTHO05D000042 7.3e-06 54.7 118 31.4
TPR.G40322 Trifolium pratense HOM05D000092 ORTHO05D000042 7.3e-06 54.7 72 34.7
arahy.Tifrunner.gnm1.ann1.99SL6H Arachis hypogaea HOM05D000092 ORTHO05D000042 9.6e-06 54.3 76 35.5
Gohir.D10G230800 Gossypium hirsutum HOM05D000092 ORTHO05D000042 9.6e-06 54.3 97 28.9
Manes.07G060750 Manihot esculenta HOM05D000092 ORTHO05D000042 9.6e-06 54.3 67 40.3
Manes.07G062700 Manihot esculenta HOM05D000092 ORTHO05D000042 9.6e-06 54.3 67 40.3
Manes.10G028501 Manihot esculenta HOM05D000092 ORTHO05D000042 9.6e-06 54.3 67 38.8
Phvul.008G071966 Phaseolus vulgaris HOM05D000092 ORTHO05D000042 9.6e-06 54.3 88 31.8
Potri.005G042900 Populus trichocarpa HOM05D000092 ORTHO05D000042 9.6e-06 54.3 76 39.5
PGR042G1821 Punica granatum HOM05D000092 ORTHO05D000042 9.6e-06 54.3 68 45.6
QL03p001996 Quercus lobata HOM05D000092 ORTHO05D000042 9.6e-06 54.3 66 42.4
QL10p064739 Quercus lobata HOM05D000092 ORTHO05D000042 9.6e-06 54.3 73 46.6
VMungo0331G2064 Vigna mungo HOM05D000092 ORTHO05D000042 9.6e-06 54.3 145 26.9


User provided reference genes

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