Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 8.1e-175 617.1 335 100.0
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 4.0e-174 614.8 335 99.4
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 1.9e-147 526.2 332 84.6
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 3.5e-146 521.9 337 80.7
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.1e-142 510.4 332 78.6
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 2.1e-130 469.5 340 75.0
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 1.8e-129 466.5 329 73.6
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 5.1e-129 464.9 326 73.6
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 1.5e-128 463.4 331 70.1
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 4.4e-128 461.8 341 70.1
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 7.4e-128 461.1 338 68.3
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 1.7e-127 459.9 341 66.9
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 2.2e-127 459.5 333 67.9
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 4.8e-127 458.4 323 70.6
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 8.2e-127 457.6 368 68.8
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 2.4e-126 456.1 335 68.7
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 3.1e-126 455.7 334 67.1
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 4.1e-126 455.3 335 68.1
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 5.3e-126 454.9 331 68.3
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 6.9e-126 454.5 340 67.6
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 9.1e-126 454.1 330 68.8
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 7.7e-125 451.1 296 74.3
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 1.7e-124 449.9 334 69.5
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 2.9e-124 449.1 295 72.2
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 2.9e-124 449.1 332 66.6
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 3.8e-124 448.7 295 74.2
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 3.8e-124 448.7 330 67.9
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 5.0e-124 448.4 330 67.9
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 5.0e-124 448.4 330 67.9
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 5.0e-124 448.4 292 73.6
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 8.5e-124 447.6 295 72.5
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 1.4e-123 446.8 294 71.4
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 4.2e-123 445.3 295 73.2
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 2.1e-122 443.0 295 70.8
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 6.1e-122 441.4 292 71.6
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 6.1e-122 441.4 333 65.8
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 1.8e-121 439.9 295 72.2
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 6.7e-121 438.0 328 64.3
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 6.7e-121 438.0 328 64.9
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 8.8e-121 437.6 336 67.6
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 1.1e-120 437.2 295 70.8
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 1.1e-120 437.2 294 69.4
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 2.0e-120 436.4 300 70.3
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 2.0e-120 436.4 337 68.5
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 2.6e-120 436.0 326 66.0
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 5.7e-120 434.9 297 68.7
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 7.4e-120 434.5 334 64.4
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 9.7e-120 434.1 339 66.1
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 1.3e-119 433.7 295 70.2
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 2.2e-119 433.0 299 69.6
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 2.2e-119 433.0 295 69.8
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 3.7e-119 432.2 297 69.0
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 1.8e-118 429.9 359 63.2
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 2.4e-118 429.5 294 70.4
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 4.1e-118 428.7 337 62.6
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 9.1e-118 427.6 293 69.6
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.0e-117 426.4 295 68.5
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 2.0e-117 426.4 292 68.2
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 2.0e-117 426.4 293 70.6
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 3.5e-117 425.6 328 64.3
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 5.9e-117 424.9 338 64.5
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.2e-116 422.9 295 68.8
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 8.5e-116 421.0 297 70.0
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.5e-115 420.2 330 65.5
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 1.9e-115 419.9 331 65.3
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 3.2e-115 419.1 290 70.7
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 5.5e-115 418.3 295 68.5
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 6.1e-114 414.8 287 70.0
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 8.0e-114 414.5 292 66.1
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 8.0e-114 414.5 292 66.1
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 1.4e-113 413.7 295 67.8
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 4.4e-112 408.7 294 66.7
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 4.4e-112 408.7 333 61.3
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 2.2e-111 406.4 335 63.6
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 3.7e-111 405.6 346 57.5
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 1.4e-110 403.7 329 64.7
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 1.8e-110 403.3 300 66.3
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 1.8e-110 403.3 300 66.3
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 3.1e-110 402.5 293 66.2
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 4.1e-110 402.1 294 67.0
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 9.1e-110 401.0 300 65.3
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 1.2e-109 400.6 330 62.4
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 2.7e-109 399.4 294 65.3
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.2e-108 396.4 293 63.5
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 2.2e-108 396.4 293 63.5
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 2.9e-108 396.0 331 61.9
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 2.9e-108 396.0 331 61.9
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 5.0e-108 395.2 303 64.4
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 1.1e-107 394.0 337 60.5
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 1.1e-107 394.0 295 63.7
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.1e-107 394.0 293 63.1
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 1.5e-107 393.7 302 64.6
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.9e-107 393.3 330 63.3
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 2.5e-107 392.9 302 64.2
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 3.2e-107 392.5 299 64.5
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 5.5e-107 391.7 269 69.1
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 2.1e-106 389.8 293 65.5
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 3.6e-106 389.0 341 60.1
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 8.0e-106 387.9 299 62.9
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 1.0e-105 387.5 337 61.7
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 3.0e-105 386.0 294 62.9
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 6.8e-105 384.8 255 79.6
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 6.8e-105 384.8 285 66.7
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.2e-104 384.0 285 66.7
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 3.7e-103 379.0 285 65.3
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 6.3e-103 378.3 295 61.4
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 1.2e-101 374.0 300 61.7
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 2.7e-101 372.9 341 56.6
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 5.0e-100 368.6 292 59.6
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 6.5e-100 368.2 256 66.4
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.3e-95 354.0 295 60.3
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 6.3e-95 351.7 341 52.5
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 2.7e-93 346.3 291 59.5
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 8.9e-89 331.3 286 55.9
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 2.6e-88 329.7 297 59.3
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 8.3e-87 324.7 305 51.8
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 1.1e-86 324.3 272 59.9
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 2.2e-79 300.1 251 57.0
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 1.5e-75 287.3 307 52.4
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 2.5e-75 286.6 315 48.9
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 2.3e-73 280.0 260 55.4
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 1.7e-71 273.9 287 45.6
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 4.1e-70 269.2 344 41.9
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 4.3e-67 259.2 287 44.3
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 4.7e-66 255.8 288 42.7
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 9.9e-64 248.1 196 61.7
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 1.1e-62 244.6 293 41.6
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 2.1e-61 240.4 159 69.8
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.9e-59 233.8 198 60.1
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 6.2e-58 228.8 258 45.7
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 1.2e-56 224.6 174 61.5
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 1.1e-54 218.0 241 47.3
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 6.0e-37 159.1 279 32.3
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 7.4e-35 152.1 114 64.9
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 8.2e-34 148.7 119 56.3
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 1.2e-32 144.8 99 69.7
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 3.8e-31 139.8 84 77.4
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 3.0e-28 130.2 120 51.7
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 4.3e-27 126.3 99 59.6
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 4.3e-27 126.3 99 59.6
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 7.6e-24 115.5 87 63.2
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 5.5e-22 109.4 83 60.2
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 1.2e-21 108.2 79 60.8
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 2.1e-21 107.5 88 54.5
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 2.1e-21 107.5 174 37.4
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 6.1e-21 105.9 73 67.1
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 7.9e-21 105.5 68 72.1
Actinidia39253 Actinidia chinensis HOM05D004821 ORTHO05D005711 2.4e-17 94.0 64 73.4
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 3.1e-17 93.6 67 65.7
TAR362G0528 Trochodendron aralioides HOM05D004821 ORTHO05D005711 1.7e-15 87.8 88 55.7
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 3.8e-15 86.7 49 77.6
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 5.0e-15 86.3 54 74.1
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 2.6e-11 73.9 47 72.3
Hund22592 Selenicereus undatus HOM05D004821 ORTHO05D005711 5.7e-11 72.8 57 56.1
BcaC06g33352 Brassica carinata HOM05D004821 ORTHO05D005711 5.3e-09 66.2 51 58.8
Os12g0225200 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 2.2e-07 60.8 91 33.0


User provided reference genes

Program Settings