Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027085 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D016406 1.9e-31 138.7 74 100.0
Dinv31912 Davidia involucrata HOM05D000278 ORTHO05D004673 1.2e-25 119.4 73 84.9
Duzib116G0529 Durio zibethinus HOM05D000278 ORTHO05D004673 2.6e-25 118.2 71 87.3
CSS0016813 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D016406 4.4e-25 117.5 70 87.1
Cpa.g.sc26.235 Carica papaya HOM05D000278 ORTHO05D004673 4.4e-25 117.5 71 87.3
Gohir.A05G255100 Gossypium hirsutum HOM05D000278 ORTHO05D004673 4.4e-25 117.5 71 87.3
Gorai.009G268200 Gossypium raimondii HOM05D000278 ORTHO05D004673 4.4e-25 117.5 71 87.3
Rhsim04G0232000 Rhododendron simsii HOM05D000278 ORTHO05D004673 4.4e-25 117.5 71 85.9
THA.LOC104800468 Tarenaya hassleriana HOM05D000278 ORTHO05D004673 5.8e-25 117.1 71 87.3
Thecc.08G054800 Theobroma cacao HOM05D000278 ORTHO05D004673 5.8e-25 117.1 71 85.9
SalBow6G3216 Salvia bowleyana HOM05D000278 ORTHO05D004673 7.6e-25 116.7 71 85.9
unitig_744.g24606 Utricularia gibba HOM05D000278 ORTHO05D004673 7.6e-25 116.7 70 87.1
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 9.9e-25 116.3 73 84.9
Migut.C00506 Erythranthe guttata HOM05D000278 ORTHO05D004673 9.9e-25 116.3 71 84.5
SGA_v2.0_scaffold25G11193 Striga asiatica HOM05D000278 ORTHO05D004673 9.9e-25 116.3 71 85.9
Duzib093G1085 Durio zibethinus HOM05D000278 ORTHO05D004673 1.3e-24 115.9 71 85.9
Gohir.D05G184500 Gossypium hirsutum HOM05D000278 ORTHO05D004673 1.3e-24 115.9 71 85.9
Gohir.D05G256700 Gossypium hirsutum HOM05D000278 ORTHO05D004673 1.3e-24 115.9 71 85.9
Gorai.009G190000 Gossypium raimondii HOM05D000278 ORTHO05D004673 1.3e-24 115.9 71 85.9
Carub.0006s1918 Capsella rubella HOM05D000278 ORTHO05D004673 1.7e-24 115.5 71 85.9
Cc01_g07800 Coffea canephora HOM05D000278 ORTHO05D004673 1.7e-24 115.5 71 85.9
AL6G32440 Arabidopsis lyrata HOM05D000278 ORTHO05D004673 2.2e-24 115.2 71 85.9
HanXRQChr02g0048731 Helianthus annuus HOM05D000278 ORTHO05D004673 2.2e-24 115.2 71 84.5
HanXRQChr05g0150641 Helianthus annuus HOM05D000278 ORTHO05D004673 2.2e-24 115.2 71 84.5
HanXRQChr05g0150651 Helianthus annuus HOM05D000278 ORTHO05D004673 2.2e-24 115.2 71 84.5
Hma1.2p1_1100F.1_g257140 Hydrangea macrophylla HOM05D000278 ORTHO05D004673 2.2e-24 115.2 70 82.9
Gohir.A05G181500 Gossypium hirsutum HOM05D000278 ORTHO05D004673 2.9e-24 114.8 71 84.5
Rhsim06G0057200 Rhododendron simsii HOM05D000278 ORTHO05D004673 2.9e-24 114.8 71 83.1
RhsimUnG0194000 Rhododendron simsii HOM05D000278 ORTHO05D004673 2.9e-24 114.8 71 83.1
BcaB05g22804 Brassica carinata HOM05D000278 ORTHO05D004673 3.8e-24 114.4 71 84.5
BcaB08g37325 Brassica carinata HOM05D000278 ORTHO05D004673 3.8e-24 114.4 71 84.5
BcaC03g13811 Brassica carinata HOM05D000278 ORTHO05D004673 3.8e-24 114.4 71 84.5
BcaC04g19481 Brassica carinata HOM05D000278 ORTHO05D004673 3.8e-24 114.4 71 84.5
A10p19170 Brassica napus HOM05D000278 ORTHO05D004673 3.8e-24 114.4 71 84.5
BNapus_Darmor_BZH_scaffold_38p01290 Brassica napus HOM05D000278 ORTHO05D004673 3.8e-24 114.4 71 84.5
C09p55210 Brassica napus HOM05D000278 ORTHO05D004673 3.8e-24 114.4 71 84.5
BolC2t07080H Brassica oleracea HOM05D000278 ORTHO05D004673 3.8e-24 114.4 71 84.5
BolC9t58390H Brassica oleracea HOM05D000278 ORTHO05D004673 3.8e-24 114.4 71 84.5
BraA10t43992Z Brassica rapa HOM05D000278 ORTHO05D004673 3.8e-24 114.4 71 84.5
COL.COLO4_26052 Corchorus olitorius HOM05D000278 ORTHO05D004673 3.8e-24 114.4 71 83.1
Dinv39570 Davidia involucrata HOM05D000278 ORTHO05D004673 3.8e-24 114.4 71 84.5
ECA240G2245 Erigeron canadensis HOM05D000278 ORTHO05D004673 3.8e-24 114.4 71 83.1
Lsat_1_v5_gn_5_47521 Lactuca sativa HOM05D000278 ORTHO05D004673 3.8e-24 114.4 71 83.1
Sp6g23630 Schrenkiella parvula HOM05D000278 ORTHO05D004673 3.8e-24 114.4 71 84.5
A03p10340 Brassica napus HOM05D000278 ORTHO05D004673 4.9e-24 114.0 71 84.5
C03p11870 Brassica napus HOM05D000278 ORTHO05D004673 4.9e-24 114.0 71 84.5
BolC3t13657H Brassica oleracea HOM05D000278 ORTHO05D004673 4.9e-24 114.0 71 84.5
BraA03t10345Z Brassica rapa HOM05D000278 ORTHO05D004673 4.9e-24 114.0 71 84.5
Haze_22737 Corylus avellana HOM05D000278 ORTHO05D004673 4.9e-24 114.0 73 82.2
Dinv32530 Davidia involucrata HOM05D000278 ORTHO05D004673 4.9e-24 114.0 71 84.5
Actinidia29778 Actinidia chinensis HOM05D000278 ORTHO05D004673 6.4e-24 113.6 71 85.9
MSTRG.24226 Avicennia marina HOM05D000278 ORTHO05D004673 6.4e-24 113.6 71 84.5
ClCG11G001640 Citrullus lanatus HOM05D000278 ORTHO05D004673 6.4e-24 113.6 71 83.1
MELO3C004636.2 Cucumis melo HOM05D000278 ORTHO05D004673 6.4e-24 113.6 71 83.1
Duzib041G0210 Durio zibethinus HOM05D000278 ORTHO05D004673 6.4e-24 113.6 71 83.1
Potri.001G341100 Populus trichocarpa HOM05D000278 ORTHO05D004673 6.4e-24 113.6 73 82.2
CSS0037161 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004673 8.4e-24 113.2 71 84.5
Peaxi162Scf00892g00123 Petunia axillaris HOM05D000278 ORTHO05D004673 8.4e-24 113.2 71 81.7
Potri.006G128600 Populus trichocarpa HOM05D000278 ORTHO05D004673 8.4e-24 113.2 73 80.8
TAR381G1660 Trochodendron aralioides HOM05D000278 ORTHO05D004673 8.4e-24 113.2 71 83.1
Aa31LG1G13870 Aethionema arabicum HOM05D000278 ORTHO05D004673 1.1e-23 112.8 71 81.7
AT5G20890 Arabidopsis thaliana HOM05D000278 ORTHO05D004673 1.1e-23 112.8 71 83.1
MSTRG.22358 Avicennia marina HOM05D000278 ORTHO05D004673 1.1e-23 112.8 71 81.7
C02p10490 Brassica napus HOM05D000278 ORTHO05D004673 1.1e-23 112.8 71 83.1
BraA02t05601Z Brassica rapa HOM05D000278 ORTHO05D004673 1.1e-23 112.8 71 83.1
CiPaw.07G141600 Carya illinoinensis HOM05D000278 ORTHO05D004673 1.1e-23 112.8 71 85.9
Eucgr.F03537 Eucalyptus grandis HOM05D000278 ORTHO05D004673 1.1e-23 112.8 71 84.5
Nitab4.5_0001163g0130 Nicotiana tabacum HOM05D000278 ORTHO05D004673 1.1e-23 112.8 71 83.1
Nitab4.5_0012306g0010 Nicotiana tabacum HOM05D000278 ORTHO05D004673 1.1e-23 112.8 71 83.1
SGA_v2.0_scaffold275G46553 Striga asiatica HOM05D000278 ORTHO05D004673 1.1e-23 112.8 71 84.5
THA.LOC104816947 Tarenaya hassleriana HOM05D000278 ORTHO05D004673 1.1e-23 112.8 71 83.1
CARHR191960 Cardamine hirsuta HOM05D000278 ORTHO05D004673 1.4e-23 112.5 71 84.5
CsaV3_2G001340 Cucumis sativus L. HOM05D000278 ORTHO05D004673 1.4e-23 112.5 71 81.7
DCAR_009520 Daucus carota HOM05D000278 ORTHO05D004673 1.4e-23 112.5 71 81.7
Nitab4.5_0000329g0270 Nicotiana tabacum HOM05D000278 ORTHO05D004673 1.4e-23 112.5 71 81.7
Nitab4.5_0005092g0060 Nicotiana tabacum HOM05D000278 ORTHO05D004673 1.4e-23 112.5 71 81.7
Actinidia37961 Actinidia chinensis HOM05D000278 ORTHO05D004673 1.9e-23 112.1 71 84.5
Lsat_1_v5_gn_3_23880 Lactuca sativa HOM05D000278 ORTHO05D004673 1.9e-23 112.1 71 81.7
vmacro19453 Vaccinium macrocarpon HOM05D000278 ORTHO05D004673 1.9e-23 112.1 71 83.1
Eucgr.F01711 Eucalyptus grandis HOM05D000278 ORTHO05D004673 2.4e-23 111.7 73 79.5
Thhalv10013239m.g Eutrema salsugineum HOM05D000278 ORTHO05D004673 2.4e-23 111.7 71 81.7
GSVIVG01008708001 Vitis vinifera HOM05D000278 ORTHO05D004673 2.4e-23 111.7 71 81.7
CAN.G546.19 Capsicum annuum HOM05D000278 ORTHO05D004673 3.2e-23 111.3 71 80.3
Sed0016101 Sechium edule HOM05D000278 ORTHO05D004673 3.2e-23 111.3 71 81.7
Solyc11g069000.2 Solanum lycopersicum HOM05D000278 ORTHO05D004673 3.2e-23 111.3 71 80.3
Sopen08g014310 Solanum pennellii HOM05D000278 ORTHO05D004673 3.2e-23 111.3 71 80.3
Sopen11g027710 Solanum pennellii HOM05D000278 ORTHO05D004673 3.2e-23 111.3 71 80.3
PGSC0003DMG400019637 Solanum tuberosum HOM05D000278 ORTHO05D004673 3.2e-23 111.3 71 80.3
Prupe.1G357200 Prunus persica HOM05D000278 ORTHO05D004673 4.2e-23 110.9 71 81.7
Lj4A877T44 Lonicera japonica HOM05D000278 ORTHO05D004673 5.4e-23 110.5 71 80.3
Nn6g31844 Nelumbo nucifera HOM05D000278 ORTHO05D004673 5.4e-23 110.5 71 81.7
QL02p013553 Quercus lobata HOM05D000278 ORTHO05D004673 5.4e-23 110.5 71 83.1
Ciclev10000836m.g Citrus clementina HOM05D000278 ORTHO05D004673 7.1e-23 110.2 71 83.1
FvH4_2g37790 Fragaria vesca HOM05D000278 ORTHO05D004673 7.1e-23 110.2 71 81.7
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 7.1e-23 110.2 71 81.7
FAN20G0278 Fragaria x ananassa HOM05D000278 ORTHO05D004673 7.1e-23 110.2 71 81.7
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 7.1e-23 110.2 71 81.7
PGR083G0799 Punica granatum HOM05D000278 ORTHO05D004673 9.3e-23 109.8 71 80.3
Sed0026774 Sechium edule HOM05D000201 ORTHO05D004673 9.3e-23 109.8 71 80.3
THA.LOC104826462 Tarenaya hassleriana HOM05D000278 ORTHO05D004673 9.3e-23 109.8 71 81.7
Atru.chr13.180 Acer truncatum HOM05D000278 ORTHO05D004673 1.2e-22 109.4 71 80.3
MD15G1004500 Malus domestica HOM05D000278 ORTHO05D004673 1.2e-22 109.4 71 80.3
AUR62023775 Chenopodium quinoa HOM05D000278 ORTHO05D004673 1.6e-22 109.0 71 77.5
Manes.05G141000 Manihot esculenta HOM05D000278 ORTHO05D004673 1.6e-22 109.0 71 81.7
Manes.18G007600 Manihot esculenta HOM05D000278 ORTHO05D004673 1.6e-22 109.0 71 81.7
Os03g0619400 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D004673 2.1e-22 108.6 71 78.9
TAR625G1357 Trochodendron aralioides HOM05D000278 ORTHO05D004673 2.1e-22 108.6 71 80.3
Aqoxy6G01859 Aquilegia oxysepala HOM05D000278 ORTHO05D004673 2.7e-22 108.2 71 77.5
MD08G1005100 Malus domestica HOM05D000278 ORTHO05D004673 2.7e-22 108.2 71 80.3
Aqoxy7G00805 Aquilegia oxysepala HOM05D000278 ORTHO05D004673 3.5e-22 107.8 71 77.5
Nn1g03634 Nelumbo nucifera HOM05D000278 ORTHO05D004673 4.6e-22 107.5 69 78.3
RcHm_v2.0_Chr6g0303921 Rosa chinensis HOM05D000278 ORTHO05D004673 4.6e-22 107.5 71 78.9
Hund12360 Selenicereus undatus HOM05D000278 ORTHO05D004673 4.6e-22 107.5 71 77.5
HPP92_017262 Vanilla planifolia HOM05D000278 ORTHO05D004673 4.6e-22 107.5 71 78.9
MBI08_g05384_MAGBIO Magnolia biondii HOM05D000278 ORTHO05D004673 6.0e-22 107.1 71 80.3
Nn5g30892 Nelumbo nucifera HOM05D000278 ORTHO05D004673 6.0e-22 107.1 69 78.3
PSO541G0609 Papaver somniferum HOM05D000278 ORTHO05D004673 6.0e-22 107.1 71 77.5
PSO675G6493 Papaver somniferum HOM05D000278 ORTHO05D004673 6.0e-22 107.1 71 77.5
EL10Ac3g06108 Beta vulgaris HOM05D000278 ORTHO05D004673 1.0e-21 106.3 71 76.1
CAN.G1001.51 Capsicum annuum HOM05D000278 ORTHO05D004673 1.0e-21 106.3 71 76.1
AUR62002414 Chenopodium quinoa HOM05D000278 ORTHO05D004673 1.0e-21 106.3 71 76.1
Lj6g0017523 Lotus japonicus HOM05D000278 ORTHO05D004673 1.7e-21 105.5 71 78.9
TWI56G0512 Tripterygium wilfordii HOM05D000278 ORTHO05D004673 1.7e-21 105.5 71 77.5
Zm00001eb127430 Zea mays HOM05D000278 ORTHO05D004673 1.7e-21 105.5 71 76.1
Os05g0556700 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D004673 3.0e-21 104.8 71 77.5
arahy.Tifrunner.gnm1.ann1.456QL1 Arachis hypogaea HOM05D000278 ORTHO05D004673 5.1e-21 104.0 71 77.5
arahy.Tifrunner.gnm1.ann1.N7I05Z Arachis hypogaea HOM05D000278 ORTHO05D004673 5.1e-21 104.0 71 77.5
PGSC0003DMG400012727 Solanum tuberosum HOM05D000278 ORTHO05D004673 5.1e-21 104.0 71 77.5
Lj1g0004523 Lotus japonicus HOM05D000278 ORTHO05D004673 6.6e-21 103.6 71 77.5
Lalb_Chr19g0124741 Lupinus albus HOM05D000278 ORTHO05D004673 6.6e-21 103.6 71 78.9
TWI36G1689 Tripterygium wilfordii HOM05D000278 ORTHO05D004673 6.6e-21 103.6 71 76.1
Glyma.11G185500 Glycine max HOM05D000278 ORTHO05D004673 8.7e-21 103.2 71 77.5
Lalb_Chr03g0043101 Lupinus albus HOM05D000278 ORTHO05D004673 8.7e-21 103.2 71 77.5
Nn3g20772 Nelumbo nucifera HOM05D000513 ORTHO05D011790 8.7e-21 103.2 71 73.2
Ah.07g202860 Amaranthus hybridus HOM05D000278 ORTHO05D004673 1.1e-20 102.8 66 78.8
ATR0049G084 Amborella trichopoda HOM05D000278 ORTHO05D004673 1.1e-20 102.8 71 77.5
Glyma.12G087300 Glycine max HOM05D000278 ORTHO05D004673 1.1e-20 102.8 71 77.5
Phvul.011G092200 Phaseolus vulgaris HOM05D000278 ORTHO05D004673 2.5e-20 101.7 71 76.1
Ca_07625_v3 Cicer arietinum L. HOM05D000278 ORTHO05D004673 4.3e-20 100.9 71 76.1
Ah.13g073410 Amaranthus hybridus HOM05D000278 ORTHO05D004673 5.6e-20 100.5 71 73.2
Ca_05203_v3 Cicer arietinum L. HOM05D000278 ORTHO05D004673 5.6e-20 100.5 71 76.1
Medtr7g113470 Medicago truncatula HOM05D000278 ORTHO05D004673 7.3e-20 100.1 73 72.6
TPR.G4726 Trifolium pratense HOM05D000278 ORTHO05D004673 9.6e-20 99.8 73 71.2
Nn1g01173 Nelumbo nucifera HOM05D000278 ORTHO05D016406 1.6e-19 99.0 66 74.2
TPR.G31895 Trifolium pratense HOM05D000278 ORTHO05D004673 1.6e-19 99.0 73 71.2
Medtr7g067470 Medicago truncatula HOM05D000278 ORTHO05D004673 2.1e-19 98.6 71 73.2
Sabra06G0101200 Salix brachista HOM05D000054 ORTHO05D000286 2.1e-19 98.6 68 76.5
Nn2g11830 Nelumbo nucifera HOM05D000278 ORTHO05D016406 3.6e-19 97.8 71 70.4
PRCOL_00000789 Prasinoderma coloniale HOM05D000278 ORTHO05D004673 2.0e-17 92.0 71 69.0
Ca_07624_v3 Cicer arietinum L. HOM05D000278 ORTHO05D008240 2.2e-16 88.6 69 69.6
Pp3c6_15940 Physcomitrium patens HOM05D000278 ORTHO05D004673 2.9e-16 88.2 71 66.2
SMO116G0467 Selaginella moellendorffii HOM05D000278 ORTHO05D004673 6.4e-16 87.0 71 64.8
Rhsim04G0226800 Rhododendron simsii HOM05D000278 ORTHO05D016406 8.4e-16 86.7 52 86.5
Pp3c5_16830 Physcomitrium patens HOM05D000278 ORTHO05D004673 1.1e-15 86.3 71 63.4
Mapoly0071s0007 Marchantia polymorpha HOM05D000278 ORTHO05D004673 1.4e-15 85.9 71 63.4
CAN.G1432.19 Capsicum annuum HOM05D000278 ORTHO05D004673 1.0e-13 79.7 49 85.7
CBR_g20448 Chara braunii HOM05D000278 ORTHO05D004673 1.0e-13 79.7 77 58.4
MCO14G488 Micromonas commoda HOM05D000278 ORTHO05D004673 4.3e-12 74.3 66 54.5
Cre09.g416750 Chlamydomonas reinhardtii HOM05D000278 ORTHO05D004673 7.4e-12 73.6 66 59.1
Rhsim02G0162100 Rhododendron simsii HOM05D000278 ORTHO05D016406 3.7e-11 71.2 56 67.9
Cfa026985 Carpinus fangiana HOM05D000278 ORTHO05D004673 2.4e-10 68.6 66 48.5
Cc10_g11410 Coffea canephora HOM05D000278 ORTHO05D016406 3.1e-10 68.2 72 58.3
Medtr3g466600 Medicago truncatula HOM05D000278 ORTHO05D016406 3.1e-10 68.2 54 63.0
Haze_26336 Corylus avellana HOM05D000278 ORTHO05D004673 2.6e-09 65.1 71 46.5
Medtr3g465910 Medicago truncatula HOM05D000079 ORTHO05D003781 3.4e-09 64.7 47 70.2
Nn4g25474 Nelumbo nucifera HOM05D000278 ORTHO05D004673 4.5e-09 64.3 42 71.4
Hma1.2p1_1100F.1_g257110 Hydrangea macrophylla HOM05D000278 ORTHO05D004673 1.7e-08 62.4 60 56.7
Atru.chr12.2046 Acer truncatum HOM05D000278 ORTHO05D016406 4.9e-08 60.8 68 55.9


User provided reference genes

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