Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 7.5e-98 360.5 185 100.0
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 1.9e-80 302.8 189 83.6
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 2.1e-79 299.3 189 82.0
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 1.5e-74 283.1 178 80.9
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 7.6e-74 280.8 177 79.1
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 9.9e-74 280.4 180 80.6
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 8.4e-73 277.3 179 78.8
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 5.4e-72 274.6 199 72.4
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 5.4e-72 274.6 184 79.3
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 2.1e-71 272.7 175 77.7
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 3.5e-71 271.9 185 75.1
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 6.0e-71 271.2 218 69.7
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 7.9e-71 270.8 176 78.4
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 7.9e-71 270.8 173 79.8
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 1.8e-70 269.6 178 77.0
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 2.3e-70 269.2 182 77.5
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 6.7e-70 267.7 175 79.4
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 6.7e-70 267.7 185 74.6
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 8.7e-70 267.3 175 78.3
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 3.3e-69 265.4 183 73.8
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 4.3e-69 265.0 175 77.7
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 4.3e-69 265.0 185 72.4
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 5.6e-69 264.6 179 77.7
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 1.6e-68 263.1 254 61.4
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 2.1e-68 262.7 175 74.9
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 2.1e-68 262.7 175 78.3
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 2.8e-68 262.3 176 76.7
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 4.8e-68 261.5 175 78.9
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 4.8e-68 261.5 190 74.2
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 6.2e-68 261.2 176 75.6
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 8.1e-68 260.8 179 76.5
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 1.1e-67 260.4 175 74.3
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 2.4e-67 259.2 170 80.0
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 3.1e-67 258.8 190 72.6
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 3.1e-67 258.8 175 74.9
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 3.1e-67 258.8 177 74.0
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 4.0e-67 258.5 194 69.6
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 4.0e-67 258.5 193 71.5
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 4.0e-67 258.5 170 78.8
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 9.0e-67 257.3 175 74.3
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 2.0e-66 256.1 175 73.7
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 2.6e-66 255.8 175 76.6
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.6e-66 255.8 175 73.7
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 2.6e-66 255.8 175 73.7
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 2.6e-66 255.8 185 71.9
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 3.4e-66 255.4 193 70.5
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 4.5e-66 255.0 184 71.2
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 7.6e-66 254.2 175 76.6
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 7.6e-66 254.2 175 75.4
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 7.6e-66 254.2 179 73.2
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 9.9e-66 253.8 175 74.9
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 9.9e-66 253.8 180 72.8
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 2.2e-65 252.7 179 73.2
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 2.9e-65 252.3 180 70.6
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 2.9e-65 252.3 180 70.6
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 3.8e-65 251.9 185 73.0
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 6.4e-65 251.1 179 73.2
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 8.4e-65 250.8 176 72.7
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 1.1e-64 250.4 182 69.8
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 1.1e-64 250.4 182 69.8
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 1.9e-64 249.6 170 77.1
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 2.4e-64 249.2 179 72.1
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 4.2e-64 248.4 164 78.0
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 4.2e-64 248.4 196 67.9
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 7.1e-64 247.7 196 67.3
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 7.1e-64 247.7 175 72.0
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 9.3e-64 247.3 176 72.7
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 9.3e-64 247.3 179 70.9
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 1.2e-63 246.9 182 69.2
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.2e-63 246.9 194 70.1
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 1.6e-63 246.5 166 74.1
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 1.6e-63 246.5 182 70.9
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 1.6e-63 246.5 179 72.1
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 2.1e-63 246.1 182 70.3
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 2.1e-63 246.1 175 73.7
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 2.7e-63 245.7 182 73.1
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 3.5e-63 245.4 177 66.7
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 6.0e-63 244.6 178 68.5
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 6.0e-63 244.6 170 75.9
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 1.8e-62 243.0 175 71.4
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 1.8e-62 243.0 169 74.6
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 2.3e-62 242.7 176 67.0
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 3.0e-62 242.3 180 71.1
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 3.9e-62 241.9 166 74.1
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 3.9e-62 241.9 182 69.2
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 3.9e-62 241.9 182 69.2
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 6.7e-62 241.1 179 70.4
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 8.7e-62 240.7 182 68.7
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 1.1e-61 240.4 173 71.1
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 1.1e-61 240.4 171 73.7
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 1.5e-61 240.0 182 68.7
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 1.5e-61 240.0 182 68.7
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 1.5e-61 240.0 176 71.0
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 1.9e-61 239.6 176 70.5
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 2.5e-61 239.2 180 69.4
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 3.3e-61 238.8 171 74.3
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 4.3e-61 238.4 168 76.2
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 7.4e-61 237.7 175 69.1
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 9.6e-61 237.3 169 72.2
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 2.1e-60 236.1 161 77.0
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 2.1e-60 236.1 176 69.9
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 2.8e-60 235.7 184 67.9
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 3.7e-60 235.3 178 70.8
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 2.4e-59 232.6 170 72.4
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 3.1e-59 232.3 165 72.7
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 4.0e-59 231.9 174 69.0
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 6.9e-59 231.1 169 66.9
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 3.4e-58 228.8 174 67.8
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 1.7e-57 226.5 175 66.9
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 1.7e-57 226.5 175 66.9
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 2.2e-57 226.1 178 64.0
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 1.1e-56 223.8 171 69.6
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 1.4e-56 223.4 180 64.4
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 1.9e-56 223.0 173 67.1
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 2.5e-56 222.6 161 72.0
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 4.2e-56 221.9 178 68.5
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 7.1e-56 221.1 203 61.1
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 9.3e-56 220.7 205 60.0
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.3e-54 216.9 150 74.0
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 1.3e-54 216.9 150 74.0
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 1.3e-54 216.9 164 65.2
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.8e-54 216.5 150 73.3
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 1.8e-54 216.5 178 63.5
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 3.0e-54 215.7 178 61.8
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 1.9e-53 213.0 157 71.3
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 2.5e-53 212.6 129 82.2
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 1.6e-52 209.9 164 61.6
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 3.7e-52 208.8 166 68.7
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 4.8e-52 208.4 200 59.5
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 6.9e-51 204.5 130 75.4
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 2.0e-50 203.0 124 86.3
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 2.6e-50 202.6 162 67.3
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 8.5e-49 197.6 120 77.5
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 2.5e-48 196.1 137 74.5
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 2.7e-47 192.6 120 78.3
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 6.1e-47 191.4 137 73.0
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 6.1e-47 191.4 130 75.4
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 3.0e-46 189.1 133 76.7
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 8.7e-46 187.6 156 67.3
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 3.3e-45 185.7 119 77.3
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 3.3e-45 185.7 131 76.3
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 2.2e-44 183.0 122 73.0
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 4.8e-44 181.8 149 57.7
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 4.5e-42 175.3 140 61.4
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 7.7e-42 174.5 136 68.4
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 3.2e-40 169.1 131 65.6
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 9.4e-40 167.5 162 52.5
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 7.9e-39 164.5 145 55.2
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.8e-38 163.3 143 56.6
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 3.9e-38 162.2 145 55.2
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 3.7e-36 155.6 116 66.4
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 1.4e-35 153.7 168 50.6
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 9.1e-35 151.0 151 47.7
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 3.4e-34 149.1 89 80.9
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 3.5e-26 122.5 108 58.3
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 6.5e-25 118.2 113 60.2
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 4.7e-23 112.1 150 46.0
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 8.2e-20 101.3 81 65.4
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.4e-11 73.9 78 47.4
Dinv02982 Davidia involucrata HOM05D004360 ORTHO05D005195 5.4e-11 72.0 53 73.6
Dinv17160 Davidia involucrata HOM05D004360 ORTHO05D005195 5.4e-11 72.0 53 73.6
Dinv04074 Davidia involucrata HOM05D004360 ORTHO05D005195 2.7e-10 69.7 54 70.4
Dinv08764 Davidia involucrata HOM05D004360 ORTHO05D005195 7.7e-10 68.2 46 73.9
TPR.G39583 Trifolium pratense HOM05D004360 ORTHO05D005195 2.9e-09 66.2 45 64.4
arahy.Tifrunner.gnm1.ann1.B7FYB2 Arachis hypogaea HOM05D001689 ORTHO05D001643 2.5e-08 63.2 44 70.5


User provided reference genes

Program Settings