Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027076 Camellia sinensis var. sinensis HOM05D007725 ORTHO05D009774 4.6e-200 701.4 471 100.0
Nitab4.5_0002517g0030 Nicotiana tabacum HOM05D007725 ORTHO05D009774 9.8e-110 401.4 464 68.1
Peaxi162Scf00955g00014 Petunia axillaris HOM05D007725 ORTHO05D009774 9.8e-110 401.4 462 68.8
Sopen12g007550 Solanum pennellii HOM05D007725 ORTHO05D009774 1.7e-101 374.0 463 65.2
PGSC0003DMG402029798 Solanum tuberosum HOM05D007725 ORTHO05D009774 3.7e-101 372.9 463 65.4
Solyc12g015650.3 Solanum lycopersicum HOM05D007725 ORTHO05D009774 3.5e-99 366.3 463 64.8
Lj1P886T16 Lonicera japonica HOM05D007725 ORTHO05D009774 3.0e-98 363.2 471 64.5
Duzib170G0716 Durio zibethinus HOM05D007725 ORTHO05D009774 2.8e-96 356.7 448 63.4
GSVIVG01037783001 Vitis vinifera HOM05D007725 ORTHO05D009774 3.3e-89 333.2 458 60.7
VMungo0540G1375 Vigna mungo HOM05D007725 ORTHO05D009774 4.3e-89 332.8 458 56.6
Nitab4.5_0000163g0300 Nicotiana tabacum HOM05D007725 ORTHO05D009774 2.8e-88 330.1 464 62.5
Dinv10315 Davidia involucrata HOM05D007725 ORTHO05D009774 3.6e-88 329.7 447 65.5
COL.COLO4_09791 Corchorus olitorius HOM05D007725 ORTHO05D009774 1.4e-87 327.8 456 60.3
Glyma.08G326100 Glycine max HOM05D007725 ORTHO05D009774 1.8e-87 327.4 456 57.0
Nn1g03245 Nelumbo nucifera HOM05D007725 ORTHO05D009774 2.4e-87 327.0 469 60.8
ClCG09G021110 Citrullus lanatus HOM05D007725 ORTHO05D009774 5.8e-86 322.4 471 59.7
DCAR_022605 Daucus carota HOM05D007725 ORTHO05D009774 2.2e-85 320.5 449 56.8
Nn1g07446 Nelumbo nucifera HOM05D007725 ORTHO05D009774 2.9e-85 320.1 460 57.2
HanXRQChr11g0333971 Helianthus annuus HOM05D007725 ORTHO05D009774 8.4e-85 318.5 458 55.2
Hma1.2p1_2796F.1_g328670 Hydrangea macrophylla HOM05D007725 ORTHO05D009774 1.9e-84 317.4 471 59.7
Gorai.007G311000 Gossypium raimondii HOM05D007725 ORTHO05D009774 3.2e-84 316.6 451 54.5
Gohir.A11G277300 Gossypium hirsutum HOM05D007725 ORTHO05D009774 9.2e-84 315.1 451 56.5
Ciclev10008214m.g Citrus clementina HOM05D007725 ORTHO05D009774 4.6e-83 312.8 458 59.6
TAR624G0507 Trochodendron aralioides HOM05D007725 ORTHO05D009774 2.3e-82 310.5 471 59.0
Cc05_g14730 Coffea canephora HOM05D007725 ORTHO05D009774 5.1e-82 309.3 465 60.4
Medtr3g056580 Medicago truncatula HOM05D007725 ORTHO05D009774 5.6e-81 305.8 448 49.3
MSTRG.15782 Avicennia marina HOM05D007725 ORTHO05D009774 2.1e-80 303.9 468 58.5
Cfa020227 Carpinus fangiana HOM05D007725 ORTHO05D009774 4.2e-76 289.7 488 53.5
Gohir.D11G287700 Gossypium hirsutum HOM05D007725 ORTHO05D009774 9.3e-76 288.5 451 49.9
GSVIVG01037784001 Vitis vinifera HOM05D007725 ORTHO05D009774 7.8e-75 285.4 472 54.2
Haze_09790 Corylus avellana HOM05D007725 ORTHO05D009774 1.7e-74 284.3 484 55.6
Cpa.g.sc12.189 Carica papaya HOM05D007725 ORTHO05D009774 3.9e-74 283.1 471 53.5
QL08p005480 Quercus lobata HOM05D007725 ORTHO05D009774 5.1e-74 282.7 470 56.0
MELO3C024908.2 Cucumis melo HOM05D007725 ORTHO05D009774 2.1e-72 277.3 438 57.8
PSO478G1598 Papaver somniferum HOM05D007725 ORTHO05D009774 4.9e-69 266.2 471 55.6
TPR.G1953 Trifolium pratense HOM05D007725 ORTHO05D009774 8.4e-69 265.4 460 36.3
Ca_26464_v3 Cicer arietinum L. HOM05D007725 ORTHO05D009774 4.2e-68 263.1 449 46.8
CsaV3_7G018510 Cucumis sativus L. HOM05D007725 ORTHO05D009774 1.2e-67 261.5 467 55.0
Sed0002917 Sechium edule HOM05D007725 ORTHO05D009774 5.1e-66 256.1 471 53.3
Manes.03G138100 Manihot esculenta HOM05D007725 ORTHO05D009774 1.1e-65 255.0 469 54.6
Psat5g175640 Pisum sativum HOM05D007725 ORTHO05D009774 1.6e-64 251.1 461 51.8
Nn1g03425 Nelumbo nucifera HOM05D007725 ORTHO05D009774 1.5e-62 244.6 449 55.5
Migut.M01753 Erythranthe guttata HOM05D007725 ORTHO05D009774 1.7e-61 241.1 465 55.5
Phvul.006G053700 Phaseolus vulgaris HOM05D007725 ORTHO05D009774 2.5e-60 237.3 363 58.7
AT3G20170 Arabidopsis thaliana HOM05D007725 ORTHO05D009774 7.1e-60 235.7 476 52.5
AL3G33870 Arabidopsis lyrata HOM05D007725 ORTHO05D009774 9.3e-60 235.3 454 53.5
arahy.Tifrunner.gnm1.ann1.LCTM2T Arachis hypogaea HOM05D007725 ORTHO05D009774 2.1e-59 234.2 454 50.7
SGA_v2.0_scaffold168G38532 Striga asiatica HOM05D007725 ORTHO05D009774 2.1e-59 234.2 425 36.2
EL10Ac4g07611 Beta vulgaris HOM05D007725 ORTHO05D009774 1.3e-58 231.5 350 57.7
arahy.Tifrunner.gnm1.ann1.TWJV4J Arachis hypogaea HOM05D007725 ORTHO05D009774 2.3e-58 230.7 454 50.2
CARHR095760 Cardamine hirsuta HOM05D007725 ORTHO05D009774 2.3e-58 230.7 458 52.8
Oeu005490.1 Olea europaea HOM05D007725 ORTHO05D009774 9.6e-57 225.3 213 56.3
arahy.Tifrunner.gnm1.ann1.Q8DMES Arachis hypogaea HOM05D007725 ORTHO05D009774 2.8e-56 223.8 454 51.5
Carub.0003s2010 Capsella rubella HOM05D007725 ORTHO05D009774 3.7e-56 223.4 476 51.5
PGR031G2940 Punica granatum HOM05D007725 ORTHO05D009774 4.8e-56 223.0 479 45.5
ATR1149G149 Amborella trichopoda HOM05D007725 ORTHO05D009774 6.2e-56 222.6 452 53.3
C03p50970 Brassica napus HOM05D007725 ORTHO05D009774 6.2e-56 222.6 479 50.7
SalBow8G2031 Salvia bowleyana HOM05D007725 ORTHO05D009774 1.1e-55 221.9 431 57.8
Aa31LG8G7000 Aethionema arabicum HOM05D007725 ORTHO05D009774 1.4e-55 221.5 463 52.3
SEGI_22467 Sequoiadendron giganteum HOM05D007725 ORTHO05D009774 1.4e-55 221.5 443 52.1
BcaB04g19094 Brassica carinata HOM05D007725 ORTHO05D009774 3.1e-55 220.3 463 53.1
A03p41610 Brassica napus HOM05D007725 ORTHO05D009774 5.8e-54 216.1 479 50.7
BolC3t17381H Brassica oleracea HOM05D007725 ORTHO05D009774 5.8e-54 216.1 479 50.3
BraA03t13314Z Brassica rapa HOM05D007725 ORTHO05D009774 5.8e-54 216.1 479 50.7
Sp3g18200 Schrenkiella parvula HOM05D007725 ORTHO05D009774 1.0e-53 215.3 474 50.4
Thhalv10020642m.g Eutrema salsugineum HOM05D007725 ORTHO05D009774 1.3e-53 214.9 475 50.9
BolC5t33143H Brassica oleracea HOM05D007725 ORTHO05D009774 3.2e-52 210.3 459 51.0
C05p44210 Brassica napus HOM05D007725 ORTHO05D009774 4.2e-52 209.9 459 51.0
AUR62040655 Chenopodium quinoa HOM05D007725 ORTHO05D009774 1.0e-50 205.3 464 49.4
Lj6g0016094 Lotus japonicus HOM05D007725 ORTHO05D009774 1.3e-50 204.9 451 48.6
A05p28800 Brassica napus HOM05D007725 ORTHO05D009774 2.3e-50 204.1 459 50.1
AUR62017062 Chenopodium quinoa HOM05D007725 ORTHO05D009774 2.3e-50 204.1 454 50.0
Lj2g0017250 Lotus japonicus HOM05D007725 ORTHO05D009774 5.1e-50 203.0 449 35.4
Lj6g0024671 Lotus japonicus HOM05D007725 ORTHO05D009774 2.2e-48 197.6 455 47.3
Lj6g0003901 Lotus japonicus HOM05D007725 ORTHO05D009774 2.9e-45 187.2 356 50.6
COL.COLO4_09793 Corchorus olitorius HOM05D007725 ORTHO05D009774 3.2e-44 183.7 194 51.0
HPP92_006089 Vanilla planifolia HOM05D007725 ORTHO05D009774 1.1e-39 168.7 467 46.7
Thecc.07G022000 Theobroma cacao HOM05D007725 ORTHO05D009774 8.5e-37 159.1 174 48.3
BraA05t21757Z Brassica rapa HOM05D007725 ORTHO05D009774 3.8e-29 133.7 203 41.9
TPR.G1910 Trifolium pratense HOM05D007725 ORTHO05D009774 1.1e-25 122.1 97 61.9
BcaC01g03576 Brassica carinata HOM05D007725 ORTHO05D009774 3.2e-20 104.0 218 36.7
HanXRQChr06g0184751 Helianthus annuus HOM05D007725 ORTHO05D009774 1.5e-17 95.1 181 34.8
BcaC02g11617 Brassica carinata HOM05D007725 ORTHO05D009774 6.1e-11 73.2 49 69.4


User provided reference genes

Program Settings