Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027054 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 1.3e-54 216.1 106 100.0
CSS0032451 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 4.7e-44 181.0 106 89.6
CSS0044668 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 1.1e-40 169.9 106 83.0
CSS0035774 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 3.0e-22 108.6 105 61.0
CSS0039126 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 3.0e-22 108.6 105 61.0
Rhsim03G0085100 Rhododendron simsii HOM05D007539 ORTHO05D009315 3.4e-18 95.1 79 74.7
Dinv37358 Davidia involucrata HOM05D007539 ORTHO05D009315 2.7e-15 85.5 80 65.0
Manes.08G015800 Manihot esculenta HOM05D007539 ORTHO05D009315 2.3e-14 82.4 83 60.2
Lj2A124T70 Lonicera japonica HOM05D007539 ORTHO05D009315 1.1e-13 80.1 69 69.6
Actinidia39861 Actinidia chinensis HOM05D007539 ORTHO05D009315 1.9e-13 79.3 79 65.8
Nitab4.5_0009839g0010 Nicotiana tabacum HOM05D007539 ORTHO05D009315 2.1e-12 75.9 82 53.7
CSS0010589 Camellia sinensis var. sinensis HOM05D021154 ORTHO05D009315 4.7e-12 74.7 68 64.7
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 1.1e-11 73.6 89 50.6
PGSC0003DMG400008599 Solanum tuberosum HOM05D007539 ORTHO05D009315 5.2e-11 71.2 83 61.4
CsaV3_3G036460 Cucumis sativus L. HOM05D007539 ORTHO05D009315 2.0e-10 69.3 66 59.1
Peaxi162Scf00146g00014 Petunia axillaris HOM05D007539 ORTHO05D009315 2.0e-10 69.3 80 56.2
Psat6g077160 Pisum sativum HOM05D007539 ORTHO05D009315 2.0e-10 69.3 54 66.7
CANSAT80G1421 Cannabis sativa HOM05D007539 ORTHO05D009315 2.6e-10 68.9 36 88.9
Cc06_g04790 Coffea canephora HOM05D007539 ORTHO05D009315 2.6e-10 68.9 73 56.2
PSO339G1895 Papaver somniferum HOM05D007539 ORTHO05D009315 2.6e-10 68.9 83 50.6
RcHm_v2.0_Chr3g0471301 Rosa chinensis HOM05D007539 ORTHO05D009315 3.4e-10 68.6 78 57.7
Ca_11568_v3 Cicer arietinum L. HOM05D007539 ORTHO05D009315 7.6e-10 67.4 51 70.6
COL.COLO4_22255 Corchorus olitorius HOM05D007539 ORTHO05D009315 7.6e-10 67.4 58 65.5
Duzib093G0735 Durio zibethinus HOM05D007539 ORTHO05D009315 9.9e-10 67.0 95 47.4
Solyc10g085820.2 Solanum lycopersicum HOM05D007539 ORTHO05D009315 9.9e-10 67.0 84 58.3
Sopen10g035220 Solanum pennellii HOM05D007539 ORTHO05D009315 9.9e-10 67.0 84 58.3
Eucgr.K02419 Eucalyptus grandis HOM05D007539 ORTHO05D009315 1.3e-09 66.6 34 91.2
Eucgr.K02422 Eucalyptus grandis HOM05D007539 ORTHO05D009315 1.3e-09 66.6 37 83.8
MD12G1102800 Malus domestica HOM05D007539 ORTHO05D009315 1.3e-09 66.6 75 53.3
Sc20g0005850 Simmondsia chinensis HOM05D007539 ORTHO05D009315 1.3e-09 66.6 77 54.5
MSTRG.10338 Avicennia marina HOM05D007539 ORTHO05D009315 1.7e-09 66.2 62 56.5
Cpa.g.sc5.125 Carica papaya HOM05D007539 ORTHO05D009315 2.9e-09 65.5 83 50.6
CiPaw.09G005200 Carya illinoinensis HOM05D007539 ORTHO05D009315 3.8e-09 65.1 94 50.0
FAN05G2086 Fragaria x ananassa HOM05D007539 ORTHO05D009315 3.8e-09 65.1 98 48.0
Nn2g13907 Nelumbo nucifera HOM05D007539 ORTHO05D009315 3.8e-09 65.1 65 58.5
SGA_v2.0_scaffold224G42914 Striga asiatica HOM05D007539 ORTHO05D009315 6.4e-09 64.3 66 56.1
TWI74G0011 Tripterygium wilfordii HOM05D007539 ORTHO05D009315 6.4e-09 64.3 66 54.5
ClCG10G019640 Citrullus lanatus HOM05D007539 ORTHO05D009315 8.4e-09 63.9 91 46.2
FvH4_6g17220 Fragaria vesca HOM05D007539 ORTHO05D009315 8.4e-09 63.9 84 53.6
HanXRQChr08g0218701 Helianthus annuus HOM05D007539 ORTHO05D009315 8.4e-09 63.9 72 52.8
Thecc.05G075600 Theobroma cacao HOM05D007539 ORTHO05D009315 1.1e-08 63.5 98 46.9
TPR.G9909 Trifolium pratense HOM05D007539 ORTHO05D009315 1.1e-08 63.5 53 66.0
Aqoxy4G02594 Aquilegia oxysepala HOM05D007539 ORTHO05D009315 1.4e-08 63.2 52 67.3
Migut.L01732 Erythranthe guttata HOM05D007539 ORTHO05D009315 1.9e-08 62.8 57 57.9
Oeu045245.1 Olea europaea HOM05D007539 ORTHO05D009315 2.4e-08 62.4 63 55.6
QL07p041368 Quercus lobata HOM05D007539 ORTHO05D009315 2.4e-08 62.4 34 85.3
arahy.Tifrunner.gnm1.ann1.6XWD2H Arachis hypogaea HOM05D007539 ORTHO05D009315 4.1e-08 61.6 36 80.6
arahy.Tifrunner.gnm1.ann1.M3KAW1 Arachis hypogaea HOM05D007539 ORTHO05D009315 4.1e-08 61.6 36 80.6
Ciclev10009520m.g Citrus clementina HOM05D007539 ORTHO05D009315 5.4e-08 61.2 59 57.6
THA.LOC104826924 Tarenaya hassleriana HOM05D002804 ORTHO05D003755 7.1e-08 60.8 52 63.5
MELO3C009408.2 Cucumis melo HOM05D007539 ORTHO05D009315 9.2e-08 60.5 36 77.8
FAN14G0473 Fragaria x ananassa HOM05D007539 ORTHO05D009315 9.2e-08 60.5 84 52.4
Cfa016483 Carpinus fangiana HOM05D007539 ORTHO05D009315 1.2e-07 60.1 36 77.8
Gohir.A04G068300 Gossypium hirsutum HOM05D007539 ORTHO05D009315 1.2e-07 60.1 31 90.3
Gorai.009G410900 Gossypium raimondii HOM05D007539 ORTHO05D009315 1.2e-07 60.1 31 90.3
Potri.016G096900 Populus trichocarpa HOM05D007539 ORTHO05D009315 1.6e-07 59.7 80 52.5
BcaB01g05814 Brassica carinata HOM05D007539 ORTHO05D009315 2.1e-07 59.3 76 52.6
FAN02G2576 Fragaria x ananassa HOM05D007539 ORTHO05D009315 2.7e-07 58.9 84 51.2
Glyma.13G148000 Glycine max HOM05D007539 ORTHO05D009315 3.5e-07 58.5 31 87.1
Medtr1g062250 Medicago truncatula HOM05D007539 ORTHO05D009315 3.5e-07 58.5 76 51.3
PGR142G1614 Punica granatum HOM05D007539 ORTHO05D009315 3.5e-07 58.5 68 51.5
FAN05G5748 Fragaria x ananassa HOM05D007539 ORTHO05D009315 4.6e-07 58.2 84 50.0
Phvul.007G226000 Phaseolus vulgaris HOM05D007539 ORTHO05D009315 6.0e-07 57.8 56 57.1
Sed0004549 Sechium edule HOM05D007539 ORTHO05D009315 6.0e-07 57.8 71 49.3
Aqoxy2G01556 Aquilegia oxysepala HOM05D007539 ORTHO05D009315 1.0e-06 57.0 30 86.7
AUR62042699 Chenopodium quinoa HOM05D007539 ORTHO05D009315 1.0e-06 57.0 44 65.9
Glyma.10G063500 Glycine max HOM05D007539 ORTHO05D009315 1.0e-06 57.0 34 79.4
MBI11_g41953_MAGBIO Magnolia biondii HOM05D007539 ORTHO05D009315 1.0e-06 57.0 48 60.4
BcaB01g05802 Brassica carinata HOM05D007539 ORTHO05D009315 1.3e-06 56.6 84 47.6
C03p01600 Brassica napus HOM05D007539 ORTHO05D009315 1.3e-06 56.6 84 47.6
BolC3t12712H Brassica oleracea HOM05D007539 ORTHO05D009315 1.3e-06 56.6 83 50.6
Lj5g0010413 Lotus japonicus HOM05D007539 ORTHO05D009315 1.3e-06 56.6 36 75.0
CAN.G729.5 Capsicum annuum HOM05D007539 ORTHO05D009315 2.3e-06 55.8 29 86.2
unitig_8.g4721 Utricularia gibba HOM05D007539 ORTHO05D009315 2.3e-06 55.8 63 50.8
GSVIVG01033714001 Vitis vinifera HOM05D007539 ORTHO05D009315 2.3e-06 55.8 61 52.5
Gohir.D04G106800 Gossypium hirsutum HOM05D007539 ORTHO05D009315 3.0e-06 55.5 31 87.1
ECA238G4618 Erigeron canadensis HOM05D007539 ORTHO05D009315 3.9e-06 55.1 28 85.7
A03p01240 Brassica napus HOM05D007539 ORTHO05D009315 5.1e-06 54.7 82 45.1
Sabra16G0100100 Salix brachista HOM05D007539 ORTHO05D009315 5.1e-06 54.7 55 61.8
VMungo0720G2140 Vigna mungo HOM05D007539 ORTHO05D009315 6.6e-06 54.3 54 57.4


User provided reference genes

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