Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027029 Camellia sinensis var. sinensis HOM05D007448 ORTHO05D009392 4.4e-83 311.2 155 100.0
Nn1g03921 Nelumbo nucifera HOM05D007448 ORTHO05D009392 5.0e-18 95.1 75 61.3
GSVIVG01014426001 Vitis vinifera HOM05D007448 ORTHO05D009392 4.2e-17 92.0 74 66.2
Actinidia18748 Actinidia chinensis HOM05D007448 ORTHO05D009392 5.5e-17 91.7 115 47.8
Glyma.12G147500 Glycine max HOM05D007448 ORTHO05D009392 9.3e-17 90.9 105 49.5
Hma1.2p1_1003F.1_g246780 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 2.1e-16 89.7 59 78.0
Hma1.2p1_1488F.1_g286625 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 2.1e-16 89.7 59 78.0
Thecc.07G071800 Theobroma cacao HOM05D007448 ORTHO05D009392 4.6e-16 88.6 76 64.5
TAR626G0388 Trochodendron aralioides HOM05D007448 ORTHO05D009392 3.9e-15 85.5 75 56.0
QL08p018291 Quercus lobata HOM05D007448 ORTHO05D009392 5.1e-15 85.1 57 77.2
EL10Ac4g09050 Beta vulgaris HOM05D007448 ORTHO05D009392 6.7e-15 84.7 76 59.2
Eucgr.F01082 Eucalyptus grandis HOM05D007448 ORTHO05D009392 1.1e-14 84.0 70 60.0
Rhsim04G0017500 Rhododendron simsii HOM05D007448 ORTHO05D009392 1.9e-14 83.2 61 75.4
Prupe.4G189600 Prunus persica HOM05D007448 ORTHO05D009392 2.5e-14 82.8 58 74.1
Sabra16G0269700 Salix brachista HOM05D007448 ORTHO05D009392 5.7e-14 81.6 56 73.2
MD03G1219500 Malus domestica HOM05D007448 ORTHO05D009392 9.7e-14 80.9 52 78.8
Atru.chr4.846 Acer truncatum HOM05D007448 ORTHO05D009392 1.3e-13 80.5 55 70.9
Lsat_1_v5_gn_5_6900 Lactuca sativa HOM05D007448 ORTHO05D009392 1.3e-13 80.5 72 58.3
Duzib213G0053 Durio zibethinus HOM05D007448 ORTHO05D009392 1.6e-13 80.1 58 74.1
Ciclev10010683m.g Citrus clementina HOM05D007448 ORTHO05D009392 3.7e-13 79.0 55 78.2
Gohir.A13G143800 Gossypium hirsutum HOM05D007448 ORTHO05D009392 3.7e-13 79.0 76 57.9
Cpa.g.sc80.111 Carica papaya HOM05D007448 ORTHO05D009392 4.8e-13 78.6 58 67.2
Gohir.D13G148600 Gossypium hirsutum HOM05D007448 ORTHO05D009392 4.8e-13 78.6 76 57.9
Ciclev10010083m.g Citrus clementina HOM05D007448 ORTHO05D009392 6.3e-13 78.2 56 75.0
HanXRQChr08g0234641 Helianthus annuus HOM05D007448 ORTHO05D009392 6.3e-13 78.2 52 73.1
Gorai.013G166400 Gossypium raimondii HOM05D007448 ORTHO05D009392 1.1e-12 77.4 76 56.6
Potri.001G406200 Populus trichocarpa HOM05D007448 ORTHO05D009392 1.1e-12 77.4 47 80.9
PGR083G2019 Punica granatum HOM05D007448 ORTHO05D009392 1.1e-12 77.4 49 75.5
RcHm_v2.0_Chr5g0035321 Rosa chinensis HOM05D007448 ORTHO05D009392 3.1e-12 75.9 68 60.3
Manes.03G111700 Manihot esculenta HOM05D007448 ORTHO05D009392 5.3e-12 75.1 58 69.0
Oeu006763.2 Olea europaea HOM05D007448 ORTHO05D009392 5.3e-12 75.1 77 55.8
Cfa020508 Carpinus fangiana HOM05D007448 ORTHO05D009392 6.9e-12 74.7 54 74.1
Sc03g0009610 Simmondsia chinensis HOM05D007448 ORTHO05D009392 9.0e-12 74.3 75 53.3
CiPaw.11G176100 Carya illinoinensis HOM05D007448 ORTHO05D009392 1.2e-11 73.9 54 74.1
CANSAT11G1525 Cannabis sativa HOM05D007448 ORTHO05D009392 1.5e-11 73.6 75 57.3
ClCG11G018440 Citrullus lanatus HOM05D007448 ORTHO05D009392 1.5e-11 73.6 50 74.0
FvH4_3g20900 Fragaria vesca HOM05D007448 ORTHO05D009392 1.5e-11 73.6 66 59.1
FAN11G2341 Fragaria x ananassa HOM05D007448 ORTHO05D009392 1.5e-11 73.6 66 59.1
Glyma.06G253900 Glycine max HOM05D007448 ORTHO05D009392 1.5e-11 73.6 46 73.9
Nitab4.5_0000639g0040 Nicotiana tabacum HOM05D007448 ORTHO05D009392 1.5e-11 73.6 76 56.6
Oeu019361.1 Olea europaea HOM05D007448 ORTHO05D009392 1.5e-11 73.6 44 81.8
Phvul.011G154800 Phaseolus vulgaris HOM05D007448 ORTHO05D009392 1.5e-11 73.6 46 73.9
Ah.06g183620 Amaranthus hybridus HOM05D007448 ORTHO05D009392 2.6e-11 72.8 55 65.5
TWI39G0054 Tripterygium wilfordii HOM05D007448 ORTHO05D009392 2.6e-11 72.8 54 64.8
vmacro09556 Vaccinium macrocarpon HOM05D007448 ORTHO05D009392 2.6e-11 72.8 61 65.6
Cc06_g05250 Coffea canephora HOM05D007448 ORTHO05D009392 3.4e-11 72.4 50 74.0
CsaV3_3G044380 Cucumis sativus L. HOM05D007448 ORTHO05D009392 3.4e-11 72.4 58 63.8
Peaxi162Scf00000g00504 Petunia axillaris HOM05D007448 ORTHO05D009392 3.4e-11 72.4 76 53.9
FAN25G3793 Fragaria x ananassa HOM05D007448 ORTHO05D009392 4.5e-11 72.0 66 57.6
AUR62029317 Chenopodium quinoa HOM05D007448 ORTHO05D009392 5.9e-11 71.6 72 48.6
FAN21G3287 Fragaria x ananassa HOM05D007448 ORTHO05D009392 5.9e-11 71.6 66 57.6
SalBow8G2366 Salvia bowleyana HOM05D007448 ORTHO05D009392 7.7e-11 71.2 47 72.3
MELO3C018199.2 Cucumis melo HOM05D003028 ORTHO05D003465 1.0e-10 70.9 44 81.8
Gohir.A11G075500 Gossypium hirsutum HOM05D007448 ORTHO05D009392 1.0e-10 70.9 46 78.3
Nitab4.5_0008360g0010 Nicotiana tabacum HOM05D007448 ORTHO05D009392 1.3e-10 70.5 55 65.5
Sopen12g006840 Solanum pennellii HOM05D007448 ORTHO05D009392 1.3e-10 70.5 61 62.3
MSTRG.14378 Avicennia marina HOM05D007448 ORTHO05D009392 1.7e-10 70.1 76 53.9
AUR62035371 Chenopodium quinoa HOM05D007448 ORTHO05D009392 2.2e-10 69.7 70 50.0
Solyc12g013500.2 Solanum lycopersicum HOM05D007448 ORTHO05D009392 2.2e-10 69.7 61 60.7
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 2.9e-10 69.3 48 62.5
BcaC06g35910 Brassica carinata HOM05D007448 ORTHO05D009392 3.8e-10 68.9 47 63.8
BolC7t41418H Brassica oleracea HOM05D007448 ORTHO05D009392 3.8e-10 68.9 47 63.8
Thhalv10021866m.g Eutrema salsugineum HOM05D007448 ORTHO05D009392 3.8e-10 68.9 56 55.4
Hund02207 Selenicereus undatus HOM05D007448 ORTHO05D009392 3.8e-10 68.9 55 67.3
CAN.G1320.10 Capsicum annuum HOM05D007448 ORTHO05D009392 5.0e-10 68.6 76 51.3
Gorai.007G085800 Gossypium raimondii HOM05D007448 ORTHO05D009392 5.0e-10 68.6 47 68.1
Sp3g23710 Schrenkiella parvula HOM05D007448 ORTHO05D009392 5.0e-10 68.6 56 55.4
PGSC0003DMG400008573 Solanum tuberosum HOM05D007448 ORTHO05D009392 5.0e-10 68.6 61 60.7
Sed0026843 Sechium edule HOM05D007448 ORTHO05D009392 6.5e-10 68.2 58 62.1
DCAR_021403 Daucus carota HOM05D007448 ORTHO05D009392 8.5e-10 67.8 75 46.7
Lj3g0013278 Lotus japonicus HOM05D007448 ORTHO05D009392 8.5e-10 67.8 46 69.6
AUR62015605 Chenopodium quinoa HOM05D007448 ORTHO05D009392 1.1e-09 67.4 51 62.7
Haze_09525 Corylus avellana HOM05D008666 ORTHO05D009871 1.1e-09 67.4 77 53.2
THA.LOC104822630 Tarenaya hassleriana HOM05D007448 ORTHO05D009392 1.4e-09 67.0 56 57.1
AUR62035373 Chenopodium quinoa HOM05D007448 ORTHO05D009392 2.5e-09 66.2 52 59.6
TPR.G23252 Trifolium pratense HOM05D007448 ORTHO05D009392 2.5e-09 66.2 75 50.7
arahy.Tifrunner.gnm1.ann1.UX5IA9 Arachis hypogaea HOM05D007448 ORTHO05D009392 3.2e-09 65.9 74 54.1
arahy.Tifrunner.gnm1.ann1.GZ4R1Y Arachis hypogaea HOM05D007448 ORTHO05D009392 5.5e-09 65.1 74 52.7
AL3G25660 Arabidopsis lyrata HOM05D007448 ORTHO05D009392 7.2e-09 64.7 49 59.2
Migut.M00875 Erythranthe guttata HOM05D007448 ORTHO05D009392 9.4e-09 64.3 63 58.7
Aa31LG8G850 Aethionema arabicum HOM05D007448 ORTHO05D009392 1.6e-08 63.5 56 53.6
A07p06520 Brassica napus HOM05D007448 ORTHO05D009392 1.6e-08 63.5 47 61.7
BraA07t28447Z Brassica rapa HOM05D007448 ORTHO05D009392 1.6e-08 63.5 47 61.7
Carub.0003s1319 Capsella rubella HOM05D007448 ORTHO05D009392 1.6e-08 63.5 47 59.6
Psat3g145520 Pisum sativum HOM05D007448 ORTHO05D009392 2.1e-08 63.2 46 67.4
AT3G13677 Arabidopsis thaliana HOM05D007448 ORTHO05D009392 2.7e-08 62.8 47 59.6
CDE02G3786 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 4.6e-08 62.0 47 59.6
MELO3C030681.2 Cucumis melo HOM05D007448 ORTHO05D009392 4.6e-08 62.0 115 40.0
BcaB06g26831 Brassica carinata HOM05D007448 ORTHO05D009392 7.9e-08 61.2 47 57.4
Medtr7g057740 Medicago truncatula HOM05D007448 ORTHO05D009392 7.9e-08 61.2 74 45.9
PSO421G0428 Papaver somniferum HOM05D007448 ORTHO05D009392 3.9e-07 58.9 46 63.0
CDE05G1526 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 1.1e-06 57.4 75 42.7
unitig_899.g15312 Utricularia gibba HOM05D007448 ORTHO05D009392 1.1e-06 57.4 47 59.6
Aqoxy4G01379 Aquilegia oxysepala HOM05D007448 ORTHO05D009392 1.5e-06 57.0 78 46.2
ECA246G0067 Erigeron canadensis HOM05D007448 ORTHO05D009392 4.3e-06 55.5 48 60.4


User provided reference genes

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