Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027019 Camellia sinensis var. sinensis HOM05D007667 ORTHO05D008033 5.6e-175 617.5 302 100.0
Potri.016G024600 Populus trichocarpa HOM05D007667 ORTHO05D008033 1.8e-56 223.8 289 50.9
CiPaw.09G161700 Carya illinoinensis HOM05D007667 ORTHO05D008033 4.0e-56 222.6 304 48.4
GSVIVG01025830001 Vitis vinifera HOM05D007667 ORTHO05D008033 7.6e-55 218.4 301 48.5
PGR142G2092 Punica granatum HOM05D007667 ORTHO05D008033 2.9e-54 216.5 335 43.9
Phvul.001G101500 Phaseolus vulgaris HOM05D007667 ORTHO05D008033 4.9e-54 215.7 292 49.3
Lj1g0016001 Lotus japonicus HOM05D007667 ORTHO05D008033 6.4e-54 215.3 287 47.7
MD12G1111200 Malus domestica HOM05D007667 ORTHO05D008033 1.1e-53 214.5 298 47.7
Glyma.19G122200 Glycine max HOM05D007667 ORTHO05D008033 1.9e-53 213.8 282 48.9
Sabra16G0030500 Salix brachista HOM05D007667 ORTHO05D008033 2.4e-53 213.4 294 49.0
arahy.Tifrunner.gnm1.ann1.B2YDCU Arachis hypogaea HOM05D007667 ORTHO05D008033 4.1e-53 212.6 288 48.6
VMungo1383G2866 Vigna mungo HOM05D007667 ORTHO05D008033 1.2e-52 211.1 294 48.6
Glyma.03G003800 Glycine max HOM05D007667 ORTHO05D008033 3.5e-52 209.5 307 47.2
QL07p015392 Quercus lobata HOM05D007667 ORTHO05D008033 6.0e-52 208.8 287 48.4
Cfa019904 Carpinus fangiana HOM05D007667 ORTHO05D008033 7.8e-52 208.4 290 48.3
Lalb_Chr14g0365211 Lupinus albus HOM05D007667 ORTHO05D008033 1.0e-51 208.0 294 45.9
arahy.Tifrunner.gnm1.ann1.2JVN0K Arachis hypogaea HOM05D007667 ORTHO05D008033 2.3e-51 206.8 288 47.9
Haze_20347 Corylus avellana HOM05D007667 ORTHO05D008033 2.3e-51 206.8 290 47.6
Medtr7g087970 Medicago truncatula HOM05D007667 ORTHO05D008033 3.0e-51 206.5 302 46.7
Psat0s3111g0200 Pisum sativum HOM05D007667 ORTHO05D008033 1.5e-50 204.1 281 46.3
Sabra06G0019700 Salix brachista HOM05D007667 ORTHO05D008033 2.4e-48 196.8 286 45.5
TAR623G0652 Trochodendron aralioides HOM05D007667 ORTHO05D008033 3.1e-48 196.4 318 44.7
Potri.006G026600 Populus trichocarpa HOM05D007667 ORTHO05D008033 9.9e-47 191.4 291 47.1
TPR.G23684 Trifolium pratense HOM05D007667 ORTHO05D008033 9.9e-47 191.4 289 43.3
Oeu041986.1 Olea europaea HOM05D007667 ORTHO05D008033 1.7e-46 190.7 294 47.3
CANSAT01G1982 Cannabis sativa HOM05D007667 ORTHO05D008033 4.9e-46 189.1 340 40.6
TWI77G1010 Tripterygium wilfordii HOM05D007667 ORTHO05D008033 3.9e-43 179.5 297 44.1
Oeu060747.1 Olea europaea HOM05D007667 ORTHO05D008033 1.1e-42 177.9 293 44.0
RhsimUnG0021200 Rhododendron simsii HOM05D007667 ORTHO05D008033 3.3e-42 176.4 320 43.8
MBI13_g29622_MAGBIO Magnolia biondii HOM05D007667 ORTHO05D008033 5.6e-42 175.6 304 42.4
Manes.08G067300 Manihot esculenta HOM05D007667 ORTHO05D008033 9.6e-42 174.9 286 43.0
vmacro07594 Vaccinium macrocarpon HOM05D007667 ORTHO05D008033 1.3e-41 174.5 306 43.1
Migut.J01575 Erythranthe guttata HOM05D007667 ORTHO05D008033 9.0e-40 168.3 301 41.5
Sc13g0000730 Simmondsia chinensis HOM05D007667 ORTHO05D008033 1.2e-39 167.9 413 32.7
Eucgr.K01702 Eucalyptus grandis HOM05D007667 ORTHO05D008033 3.4e-39 166.4 342 37.7
MSTRG.6277 Avicennia marina HOM05D007667 ORTHO05D008033 1.3e-38 164.5 306 40.2
Ciclev10012153m.g Citrus clementina HOM05D007667 ORTHO05D008033 1.6e-36 157.5 291 39.9
Hund19052 Selenicereus undatus HOM05D007667 ORTHO05D008033 1.5e-34 151.0 328 36.3
Aqoxy3G03841 Aquilegia oxysepala HOM05D007667 ORTHO05D008033 9.6e-34 148.3 292 37.7
Thecc.05G130400 Theobroma cacao HOM05D007667 ORTHO05D008033 9.6e-34 148.3 278 38.5
Nn7g37184 Nelumbo nucifera HOM05D007667 ORTHO05D001109 1.3e-33 147.9 285 41.1
SalBow6G3731 Salvia bowleyana HOM05D007667 ORTHO05D008033 4.0e-32 142.9 410 32.7
ClCG04G005020 Citrullus lanatus HOM05D007667 ORTHO05D008033 9.0e-32 141.7 339 36.3
Cc06_g20370 Coffea canephora HOM05D007667 ORTHO05D008033 9.0e-32 141.7 313 35.8
COL.COLO4_22773 Corchorus olitorius HOM05D007667 ORTHO05D008033 2.0e-31 140.6 275 38.5
Sed0012185 Sechium edule HOM05D007667 ORTHO05D008033 4.5e-31 139.4 339 35.1
CsaV3_4G028970 Cucumis sativus L. HOM05D007667 ORTHO05D008033 1.7e-30 137.5 345 34.5
SGA_v2.0_scaffold66G22329 Striga asiatica HOM05D007667 ORTHO05D008033 1.9e-29 134.0 309 35.6
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 2.4e-29 133.7 334 33.8
Duzib128G0300 Durio zibethinus HOM05D007667 ORTHO05D008033 3.2e-29 133.3 275 37.8
Ca_08329_v3 Cicer arietinum L. HOM05D007667 ORTHO05D008033 6.0e-28 129.0 154 51.3
RcHm_v2.0_Chr3g0495051 Rosa chinensis HOM05D007667 ORTHO05D008033 1.8e-27 127.5 314 35.7
PSO339G5815 Papaver somniferum HOM05D007667 ORTHO05D008033 5.1e-27 125.9 363 30.9
SalBow6G3030 Salvia bowleyana HOM05D007667 ORTHO05D008033 5.1e-27 125.9 398 31.7
PSO384G0308 Papaver somniferum HOM05D007667 ORTHO05D008033 1.5e-26 124.4 361 31.3
Dinv02787 Davidia involucrata HOM05D007667 ORTHO05D008033 3.3e-26 123.2 187 44.9
ClCG10G016970 Citrullus lanatus HOM05D007667 ORTHO05D008033 4.3e-26 122.9 279 36.9
MELO3C030720.2 Cucumis melo HOM05D007667 ORTHO05D008033 5.6e-26 122.5 281 36.3
Prupe.7G023900 Prunus persica HOM05D007667 ORTHO05D008033 7.4e-26 122.1 173 49.1
CsaV3_3G039420 Cucumis sativus L. HOM05D007667 ORTHO05D008033 1.1e-24 118.2 283 35.3
DCAR_020622 Daucus carota HOM05D007667 ORTHO05D008033 4.0e-24 116.3 221 38.0
Ah.13g077440 Amaranthus hybridus HOM05D007667 ORTHO05D008033 2.0e-23 114.0 314 33.1
Atru.chr8.918 Acer truncatum HOM05D007667 ORTHO05D008033 7.6e-23 112.1 284 32.0
Nitab4.5_0002201g0030 Nicotiana tabacum HOM05D007667 ORTHO05D008033 7.6e-23 112.1 306 33.7
Lj1A1064T35 Lonicera japonica HOM05D007667 ORTHO05D008033 1.3e-22 111.3 176 42.0
Sed0023543 Sechium edule HOM05D007667 ORTHO05D008033 1.9e-21 107.5 253 36.0
HPP92_012452 Vanilla planifolia HOM05D007667 ORTHO05D008033 7.1e-21 105.5 302 34.1
CDE02G4005 Ceratophyllum demersum HOM05D000558 ORTHO05D008033 1.2e-20 104.8 274 30.3
Lalb_Chr22g0358171 Lupinus albus HOM05D007667 ORTHO05D008033 2.5e-18 97.1 168 45.2
ATR1096G118 Amborella trichopoda HOM05D007667 ORTHO05D008033 1.6e-17 94.4 377 30.0
EL10Ac3g07362 Beta vulgaris HOM05D007667 ORTHO05D008033 2.8e-17 93.6 307 31.9
PGSC0003DMG400029088 Solanum tuberosum HOM05D007667 ORTHO05D008033 3.7e-17 93.2 252 31.3
Solyc08g067000.3 Solanum lycopersicum HOM05D007667 ORTHO05D008033 6.3e-17 92.4 255 31.4
Actinidia37860 Actinidia chinensis HOM05D007667 ORTHO05D008033 1.1e-16 91.7 300 31.0
Lalb_Chr22g0358161 Lupinus albus HOM05D007667 ORTHO05D008033 1.1e-16 91.7 117 47.0
Dinv21555 Davidia involucrata HOM05D007667 ORTHO05D008033 2.0e-15 87.4 111 52.3
BcaC07g40118 Brassica carinata HOM05D009749 ORTHO05D008033 2.2e-14 84.0 242 31.8
Sopen08g020950 Solanum pennellii HOM05D007667 ORTHO05D008033 3.8e-14 83.2 240 30.8
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 8.4e-14 82.0 110 46.4
THA.LOC104803305 Tarenaya hassleriana HOM05D009749 ORTHO05D008033 8.4e-14 82.0 86 47.7
arahy.Tifrunner.gnm1.ann1.S7MPKE Arachis hypogaea HOM05D007667 ORTHO05D008033 1.4e-13 81.3 86 54.7
arahy.Tifrunner.gnm1.ann1.48UEJW Arachis hypogaea HOM05D007667 ORTHO05D008033 2.5e-13 80.5 87 54.0
arahy.Tifrunner.gnm1.ann1.EU10QV Arachis hypogaea HOM05D007667 ORTHO05D008033 3.5e-12 76.6 86 52.3
AL5G38190 Arabidopsis lyrata HOM05D009749 ORTHO05D008033 6.1e-12 75.9 246 28.0
arahy.Tifrunner.gnm1.ann1.NYTL45 Arachis hypogaea HOM05D007667 ORTHO05D008033 6.1e-12 75.9 93 50.5
BraA04t16080Z Brassica rapa HOM05D009749 ORTHO05D008033 6.1e-12 75.9 250 28.4
arahy.Tifrunner.gnm1.ann1.3W78Z9 Arachis hypogaea HOM05D007667 ORTHO05D008033 7.9e-12 75.5 83 54.2
Sp5g05780 Schrenkiella parvula HOM05D009749 ORTHO05D008033 1.0e-11 75.1 272 26.8
arahy.Tifrunner.gnm1.ann1.8XR3F9 Arachis hypogaea HOM05D007667 ORTHO05D008033 1.3e-11 74.7 86 53.5
BcaB02g08346 Brassica carinata HOM05D009749 ORTHO05D008033 1.8e-11 74.3 305 27.5
A04p03560 Brassica napus HOM05D009749 ORTHO05D008033 1.8e-11 74.3 246 27.6
A09p49630 Brassica napus HOM05D009749 ORTHO05D008033 1.8e-11 74.3 264 29.5
C04p35700 Brassica napus HOM05D009749 ORTHO05D008033 1.8e-11 74.3 243 26.7
BraA09t40416Z Brassica rapa HOM05D009749 ORTHO05D008033 1.8e-11 74.3 264 29.5
Cfa010473 Carpinus fangiana HOM05D007667 ORTHO05D008033 2.3e-11 73.9 78 60.3
AT3G56810 Arabidopsis thaliana HOM05D009749 ORTHO05D008033 3.0e-11 73.6 246 26.4
CARHR166960 Cardamine hirsuta HOM05D009749 ORTHO05D008033 3.0e-11 73.6 278 28.1
AUR62020980 Chenopodium quinoa HOM05D007667 ORTHO05D008033 3.9e-11 73.2 71 54.9
Carub.0005s2354 Capsella rubella HOM05D009749 ORTHO05D008033 5.1e-11 72.8 248 26.6
BcaB02g07636 Brassica carinata HOM05D009749 ORTHO05D008033 8.7e-11 72.0 246 25.6
BcaC08g44807 Brassica carinata HOM05D009749 ORTHO05D008033 8.7e-11 72.0 257 29.2
BolC4t25234H Brassica oleracea HOM05D009749 ORTHO05D008033 1.1e-10 71.6 252 26.2
Thhalv10006250m.g Eutrema salsugineum HOM05D009749 ORTHO05D008033 1.5e-10 71.2 92 43.5
arahy.Tifrunner.gnm1.ann1.W45WAC Arachis hypogaea HOM05D007667 ORTHO05D008033 4.3e-10 69.7 83 51.8
C06p23780 Brassica napus HOM05D009749 ORTHO05D008033 7.4e-10 68.9 245 28.6
BolC6t37547H Brassica oleracea HOM05D009749 ORTHO05D008033 7.4e-10 68.9 258 29.5
A07p23080 Brassica napus HOM05D009749 ORTHO05D008033 9.7e-10 68.6 283 27.9
BraA07t29970Z Brassica rapa HOM05D009749 ORTHO05D008033 9.7e-10 68.6 283 27.9
BcaC07g39991 Brassica carinata HOM05D009749 ORTHO05D008033 2.4e-08 63.9 278 27.3
BolC8t50822H Brassica oleracea HOM05D009749 ORTHO05D008033 2.4e-08 63.9 278 27.3
MBI13_g31583_MAGBIO Magnolia biondii HOM05D007667 ORTHO05D008033 2.4e-08 63.9 52 65.4
C08p32040 Brassica napus HOM05D009749 ORTHO05D008033 3.1e-08 63.5 278 27.3
CDE04G0047 Ceratophyllum demersum HOM05D007667 ORTHO05D008033 4.1e-08 63.2 257 26.5
FvH4_1g29470 Fragaria vesca HOM05D007667 ORTHO05D008033 4.1e-08 63.2 126 38.1
MELO3C019169.2 Cucumis melo HOM05D007667 ORTHO05D008033 5.3e-08 62.8 82 40.2
Os03g0319200 Oryza sativa ssp. japonica HOM05D043175 ORTHO05D008033 6.9e-08 62.4 130 36.9
unitig_744.g24157 Utricularia gibba HOM05D007667 ORTHO05D008033 6.9e-08 62.4 96 42.7
HPP92_014340 Vanilla planifolia HOM05D007667 ORTHO05D008033 2.0e-07 60.8 113 37.2
Zm00001eb015190 Zea mays HOM05D043175 ORTHO05D008033 5.9e-07 59.3 142 34.5
MBI13_g08646_MAGBIO Magnolia biondii HOM05D007667 ORTHO05D008033 1.3e-06 58.2 71 47.9


User provided reference genes

Program Settings