Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027015 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 9.3e-95 350.1 169 100.0
CSS0019703 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 3.1e-82 308.5 150 97.3
Actinidia22388 Actinidia chinensis HOM05D006750 ORTHO05D008426 2.6e-68 262.3 182 71.4
vmacro03507 Vaccinium macrocarpon HOM05D006750 ORTHO05D008426 2.9e-64 248.8 172 70.9
RhsimUnG0232200 Rhododendron simsii HOM05D006750 ORTHO05D008426 1.4e-63 246.5 166 72.3
Lj1A1143T38 Lonicera japonica HOM05D006750 ORTHO05D008426 1.3e-59 233.4 150 72.0
Dinv11873 Davidia involucrata HOM05D006750 ORTHO05D008426 4.8e-59 231.5 149 75.2
FvH4_3g12150 Fragaria vesca HOM05D006750 ORTHO05D008426 5.9e-57 224.6 156 66.7
FAN16G3293 Fragaria x ananassa HOM05D006750 ORTHO05D008426 1.0e-56 223.8 157 65.6
FAN25G1681 Fragaria x ananassa HOM05D006750 ORTHO05D008426 1.7e-56 223.0 156 66.0
Manes.11G104340 Manihot esculenta HOM05D006750 ORTHO05D008426 2.9e-56 222.2 167 62.3
Atru.chr12.2220 Acer truncatum HOM05D006750 ORTHO05D008426 6.5e-56 221.1 165 63.6
Cc09_g06280 Coffea canephora HOM05D006750 ORTHO05D008426 2.5e-55 219.2 156 65.4
GSVIVG01012094001 Vitis vinifera HOM05D006750 ORTHO05D008426 3.2e-55 218.8 155 66.5
Ciclev10016972m.g Citrus clementina HOM05D006750 ORTHO05D008426 4.2e-55 218.4 154 64.3
Potri.012G120100 Populus trichocarpa HOM05D006750 ORTHO05D008426 4.2e-55 218.4 164 62.8
RcHm_v2.0_Chr5g0019891 Rosa chinensis HOM05D006750 ORTHO05D008426 7.2e-55 217.6 155 65.8
Potri.012G120220 Populus trichocarpa HOM05D006750 ORTHO05D008426 1.6e-54 216.5 164 62.2
CiPaw.10G065100 Carya illinoinensis HOM05D006750 ORTHO05D008426 2.3e-53 212.6 154 63.0
Aqoxy1G01469 Aquilegia oxysepala HOM05D006750 ORTHO05D008426 4.0e-53 211.8 154 66.2
Haze_06026 Corylus avellana HOM05D006750 ORTHO05D008426 8.8e-53 210.7 137 70.1
TAR627G0115 Trochodendron aralioides HOM05D006750 ORTHO05D008426 1.2e-52 210.3 161 63.4
MELO3C021769.2 Cucumis melo HOM05D006750 ORTHO05D008426 1.5e-52 209.9 165 61.2
DCAR_004323 Daucus carota HOM05D006750 ORTHO05D008426 2.0e-52 209.5 142 67.6
CANSAT21G0613 Cannabis sativa HOM05D006750 ORTHO05D008426 3.3e-52 208.8 162 63.0
Haze_06024 Corylus avellana HOM05D006750 ORTHO05D008426 3.3e-52 208.8 137 69.3
MD10G1234600 Malus domestica HOM05D006750 ORTHO05D008426 3.3e-52 208.8 163 60.7
Prupe.4G110300 Prunus persica HOM05D006750 ORTHO05D008426 4.4e-52 208.4 163 62.0
MSTRG.22268 Avicennia marina HOM05D006750 ORTHO05D008426 7.5e-52 207.6 164 62.2
ClCG01G009300 Citrullus lanatus HOM05D006750 ORTHO05D008426 1.3e-51 206.8 148 64.2
CAN.G1222.19 Capsicum annuum HOM05D006750 ORTHO05D008426 1.7e-51 206.5 155 62.6
HanXRQChr07g0189661 Helianthus annuus HOM05D006750 ORTHO05D008426 2.8e-51 205.7 149 63.8
Nn7g38126 Nelumbo nucifera HOM05D006750 ORTHO05D008426 2.8e-51 205.7 156 61.5
Hma1.2p1_0040F.1_g025070 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 3.7e-51 205.3 127 74.0
Sed0026407 Sechium edule HOM05D006750 ORTHO05D008426 4.8e-51 204.9 168 60.1
CsaV3_1G046580 Cucumis sativus L. HOM05D006750 ORTHO05D008426 6.3e-51 204.5 148 63.5
MD05G1254400 Malus domestica HOM05D006750 ORTHO05D008426 6.3e-51 204.5 163 60.1
Sabra15G0136900 Salix brachista HOM05D006750 ORTHO05D008426 1.1e-50 203.8 164 60.4
SalBow8G2736 Salvia bowleyana HOM05D006750 ORTHO05D008426 1.8e-50 203.0 164 61.6
TWI63G0081 Tripterygium wilfordii HOM05D006750 ORTHO05D008426 3.1e-50 202.2 145 63.4
SalBow8G0594 Salvia bowleyana HOM05D006750 ORTHO05D008426 4.1e-50 201.8 159 61.6
SGA_v2.0_scaffold298G47680 Striga asiatica HOM05D006750 ORTHO05D008426 7.0e-50 201.1 165 61.8
Nitab4.5_0003773g0080 Nicotiana tabacum HOM05D006750 ORTHO05D008426 1.6e-49 199.9 157 64.3
Solyc02g069070.3 Solanum lycopersicum HOM05D006750 ORTHO05D008426 1.6e-49 199.9 156 62.2
Migut.M01971 Erythranthe guttata HOM05D006750 ORTHO05D008426 3.5e-49 198.7 163 58.9
Eucgr.D01041 Eucalyptus grandis HOM05D006750 ORTHO05D008426 5.9e-49 198.0 156 58.3
Thecc.06G140200 Theobroma cacao HOM05D006750 ORTHO05D008426 7.7e-49 197.6 157 58.6
Thecc.06G141200 Theobroma cacao HOM05D006750 ORTHO05D008426 1.0e-48 197.2 157 58.0
CARHR134300 Cardamine hirsuta HOM05D006750 ORTHO05D008426 1.3e-48 196.8 156 57.7
Gorai.009G437900 Gossypium raimondii HOM05D006750 ORTHO05D008426 1.3e-48 196.8 149 61.7
Lsat_1_v5_gn_5_36321 Lactuca sativa HOM05D006750 ORTHO05D008426 3.8e-48 195.3 161 60.2
Nitab4.5_0002056g0050 Nicotiana tabacum HOM05D006750 ORTHO05D008426 5.0e-48 194.9 156 61.5
Gohir.D05G369200 Gossypium hirsutum HOM05D006750 ORTHO05D008426 6.5e-48 194.5 149 61.1
PGR142G2582 Punica granatum HOM05D006750 ORTHO05D008426 8.5e-48 194.1 143 61.5
Gohir.A04G017000 Gossypium hirsutum HOM05D006750 ORTHO05D008426 1.5e-47 193.4 149 61.1
Ca_21154_v3 Cicer arietinum L. HOM05D006750 ORTHO05D008426 5.5e-47 191.4 153 60.8
Oeu052673.2 Olea europaea HOM05D006750 ORTHO05D008426 1.2e-46 190.3 157 58.6
Carub.0004s2150 Capsella rubella HOM05D006750 ORTHO05D008426 2.1e-46 189.5 156 55.1
Duzib235G0570 Durio zibethinus HOM05D006750 ORTHO05D008426 2.1e-46 189.5 142 61.3
BcaB02g09122 Brassica carinata HOM05D006750 ORTHO05D008426 2.7e-46 189.1 152 57.2
BraA05t19661Z Brassica rapa HOM05D006750 ORTHO05D008426 2.7e-46 189.1 157 54.1
Thhalv10017350m.g Eutrema salsugineum HOM05D006750 ORTHO05D008426 2.7e-46 189.1 155 52.3
AL4G36810 Arabidopsis lyrata HOM05D006750 ORTHO05D008426 6.1e-46 188.0 152 55.9
Sp4g21740 Schrenkiella parvula HOM05D006750 ORTHO05D008426 1.0e-45 187.2 151 53.0
BcaC02g11618 Brassica carinata HOM05D006750 ORTHO05D008426 1.4e-45 186.8 152 54.6
C04p13120 Brassica napus HOM05D006750 ORTHO05D008426 1.4e-45 186.8 152 54.6
AT2G39440 Arabidopsis thaliana HOM05D006750 ORTHO05D008426 1.8e-45 186.4 160 51.2
A05p06970 Brassica napus HOM05D006750 ORTHO05D008426 1.8e-45 186.4 157 53.5
QL11p018076 Quercus lobata HOM05D006750 ORTHO05D008426 2.3e-45 186.0 137 65.7
BolC4t22432H Brassica oleracea HOM05D006750 ORTHO05D008426 4.0e-45 185.3 152 53.9
THA.LOC104824253 Tarenaya hassleriana HOM05D006750 ORTHO05D008426 4.0e-45 185.3 160 56.2
Lj4g0008374 Lotus japonicus HOM05D006750 ORTHO05D008426 6.8e-45 184.5 149 61.1
C04p08300 Brassica napus HOM05D006750 ORTHO05D008426 2.6e-44 182.6 152 53.9
BcaC02g12068 Brassica carinata HOM05D006750 ORTHO05D008426 3.4e-44 182.2 152 53.3
ECA246G4127 Erigeron canadensis HOM05D006750 ORTHO05D008426 3.4e-44 182.2 131 61.8
unitig_748.g7497 Utricularia gibba HOM05D006750 ORTHO05D008426 7.5e-44 181.0 167 52.7
PSO675G8070 Papaver somniferum HOM05D006750 ORTHO05D008426 1.7e-43 179.9 152 55.9
Phvul.003G153500 Phaseolus vulgaris HOM05D006750 ORTHO05D008426 1.7e-43 179.9 136 61.0
PSO541G1844 Papaver somniferum HOM05D006750 ORTHO05D008426 2.2e-43 179.5 171 53.2
Glyma.02G206800 Glycine max HOM05D006750 ORTHO05D008426 8.3e-43 177.6 153 58.2
Sp4g08180 Schrenkiella parvula HOM05D006750 ORTHO05D008426 4.1e-42 175.3 157 49.7
VMungo1215G0360 Vigna mungo HOM05D006750 ORTHO05D008426 2.7e-41 172.6 136 59.6
TPR.G24866 Trifolium pratense HOM05D006750 ORTHO05D008426 7.7e-41 171.0 153 54.2
CDE06G2778 Ceratophyllum demersum HOM05D006750 ORTHO05D008426 6.6e-40 167.9 123 60.2
HPP92_004186 Vanilla planifolia HOM05D006750 ORTHO05D008426 8.6e-40 167.5 169 48.5
EL10Ac2g02809 Beta vulgaris HOM05D006750 ORTHO05D008426 1.5e-39 166.8 170 51.8
Psat0s3953g0080 Pisum sativum HOM05D006750 ORTHO05D008426 1.5e-39 166.8 153 52.3
arahy.Tifrunner.gnm1.ann1.8322W6 Arachis hypogaea HOM05D006750 ORTHO05D008426 1.4e-37 160.2 138 53.6
arahy.Tifrunner.gnm1.ann1.RPZE8L Arachis hypogaea HOM05D006750 ORTHO05D008426 1.4e-37 160.2 138 53.6
Cfa000723 Carpinus fangiana HOM05D006750 ORTHO05D008426 1.8e-37 159.8 108 68.5
AUR62007362 Chenopodium quinoa HOM05D006750 ORTHO05D008426 4.0e-37 158.7 141 53.9
AUR62018626 Chenopodium quinoa HOM05D006750 ORTHO05D008426 3.4e-36 155.6 168 50.6
Lalb_Chr02g0152091 Lupinus albus HOM05D006750 ORTHO05D008426 5.7e-36 154.8 145 53.8
Os02g0168900 Oryza sativa ssp. japonica HOM05D006750 ORTHO05D008426 7.5e-36 154.5 160 50.6
Sc05g0005750 Simmondsia chinensis HOM05D006750 ORTHO05D008426 4.9e-35 151.8 117 62.4
COL.COLO4_30981 Corchorus olitorius HOM05D006750 ORTHO05D008426 9.2e-34 147.5 105 62.9
Peaxi162Scf00149g00921 Petunia axillaris HOM05D006750 ORTHO05D008426 1.3e-32 143.7 155 49.0
Ah.12g055560 Amaranthus hybridus HOM05D002269 ORTHO05D002421 1.7e-32 143.3 171 45.0
Hma1.2p1_0040F.1_g025080 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 1.5e-31 140.2 93 71.0
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 2.3e-29 132.9 114 53.5
ATR0763G132 Amborella trichopoda HOM05D006750 ORTHO05D008426 7.5e-28 127.9 136 48.5
CBR_g39953 Chara braunii HOM05D006750 ORTHO05D008426 2.4e-26 122.9 180 37.8
CARHR087370 Cardamine hirsuta HOM05D006750 ORTHO05D008426 1.6e-25 120.2 85 61.2
Pp3c2_9480 Physcomitrium patens HOM05D006750 ORTHO05D008426 5.0e-24 115.2 132 43.2
SMO367G1186 Selaginella moellendorffii HOM05D006750 ORTHO05D008426 1.1e-23 114.0 128 39.1
SHI31544 Sapria himalayana HOM05D006750 ORTHO05D008426 2.5e-23 112.8 197 34.0
Hund11170 Selenicereus undatus HOM05D006750 ORTHO05D008426 2.8e-22 109.4 87 58.6
Cpa.g.sc135.32 Carica papaya HOM05D006750 ORTHO05D008426 1.1e-21 107.5 90 60.0
Mapoly0007s0049 Marchantia polymorpha HOM05D006750 ORTHO05D008426 3.7e-19 99.0 144 36.8
Sopen02g018170 Solanum pennellii HOM05D006750 ORTHO05D008426 7.8e-17 91.3 70 62.9
Zm00001eb233030 Zea mays HOM05D006750 ORTHO05D008426 2.1e-14 83.2 159 32.1
AagrBONN_evm.TU.Sc2ySwM_344.3424 Anthoceros agrestis HOM05D006750 ORTHO05D008426 1.5e-12 77.0 104 36.5
Cre08.g378100 Chlamydomonas reinhardtii HOM05D006750 ORTHO05D008426 5.8e-12 75.1 135 32.6
TPR.G24917 Trifolium pratense HOM05D006750 ORTHO05D008426 5.8e-12 75.1 75 52.0
Hund11169 Selenicereus undatus HOM05D006750 ORTHO05D008426 5.4e-10 68.6 94 43.6
PRCOL_00005799 Prasinoderma coloniale HOM05D006750 ORTHO05D008426 1.0e-08 64.3 155 31.6
Cfa010446 Carpinus fangiana HOM05D006750 ORTHO05D008426 1.3e-08 63.9 45 62.2
Cfa003473 Carpinus fangiana HOM05D006750 ORTHO05D008426 8.6e-08 61.2 32 78.1
MBI18_g36125_MAGBIO Magnolia biondii HOM05D003289 ORTHO05D018396 2.5e-07 59.7 53 49.1
Cfa005130 Carpinus fangiana HOM05D000013 ORTHO05D000011 1.2e-06 57.4 32 71.9
Cfa014827 Carpinus fangiana HOM05D006750 ORTHO05D008426 2.8e-06 56.2 31 74.2
Cfa001145 Carpinus fangiana HOM05D000011 ORTHO05D000157 4.7e-06 55.5 35 68.6
Zm00001eb233050 Zea mays HOM05D006750 ORTHO05D008426 4.7e-06 55.5 155 29.7


User provided reference genes

Program Settings