Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 1.4e-257 892.5 484 100.0
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 1.2e-78 298.1 545 45.0
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 4.3e-60 236.5 431 42.5
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 5.4e-55 219.5 383 42.3
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 2.7e-54 217.2 509 37.3
Actinidia31373 Actinidia chinensis HOM05D004305 ORTHO05D005159 3.5e-46 190.3 407 38.6
Actinidia32347 Actinidia chinensis HOM05D004305 ORTHO05D005159 3.8e-40 170.2 534 35.6
RcHm_v2.0_Chr5g0017411 Rosa chinensis HOM05D004305 ORTHO05D005159 4.9e-40 169.9 494 32.6
CANSAT35G0942 Cannabis sativa HOM05D004305 ORTHO05D005159 9.3e-39 165.6 494 33.4
FAN11G3528 Fragaria x ananassa HOM05D004305 ORTHO05D005159 4.6e-38 163.3 486 33.5
MSTRG.16299 Avicennia marina HOM05D004305 ORTHO05D005159 1.3e-37 161.8 504 34.7
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 1.8e-37 161.4 491 35.4
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 1.1e-36 158.7 497 33.6
FvH4_3g10700 Fragaria vesca HOM05D004305 ORTHO05D005159 1.1e-36 158.7 496 33.1
Oeu041117.1 Olea europaea HOM05D004305 ORTHO05D005159 4.3e-36 156.8 497 33.6
FAN25G2552 Fragaria x ananassa HOM05D004305 ORTHO05D005159 3.7e-35 153.7 497 31.8
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.8e-34 151.4 484 32.2
Actinidia26708 Actinidia chinensis HOM05D004305 ORTHO05D005159 3.1e-34 150.6 272 42.6
Oeu040075.1 Olea europaea HOM05D004305 ORTHO05D005159 4.0e-34 150.2 392 36.5
Oeu060316.1 Olea europaea HOM05D004305 ORTHO05D005159 4.0e-34 150.2 523 31.9
Oeu015165.2 Olea europaea HOM05D004305 ORTHO05D005159 5.8e-33 146.4 486 32.7
FAN21G2878 Fragaria x ananassa HOM05D004305 ORTHO05D005159 7.6e-33 146.0 469 32.2
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 1.7e-32 144.8 494 33.6
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 8.4e-32 142.5 502 31.9
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 1.1e-31 142.1 485 31.8
MSTRG.7546 Avicennia marina HOM05D004305 ORTHO05D005159 1.9e-31 141.4 505 30.9
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 1.9e-31 141.4 487 33.9
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 2.5e-31 141.0 498 32.7
Cfa000806 Carpinus fangiana HOM05D004305 ORTHO05D005159 5.5e-31 139.8 504 31.5
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 9.3e-31 139.0 482 32.2
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 7.9e-30 136.0 490 30.4
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 3.9e-29 133.7 540 30.2
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 6.7e-29 132.9 513 31.0
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 8.7e-29 132.5 495 30.3
HanXRQChr08g0237311 Helianthus annuus HOM05D004305 ORTHO05D005159 8.7e-29 132.5 485 29.7
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 8.7e-29 132.5 497 32.8
Sabra16G0315300 Salix brachista HOM05D004305 ORTHO05D005159 8.7e-29 132.5 494 32.8
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 1.5e-28 131.7 483 30.8
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 1.5e-28 131.7 475 32.0
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 1.5e-28 131.7 533 30.8
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 3.3e-28 130.6 518 29.2
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 5.7e-28 129.8 484 31.4
Haze_05867 Corylus avellana HOM05D004305 ORTHO05D005159 1.3e-27 128.6 494 31.4
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 2.2e-27 127.9 535 29.0
Cc09_g07570 Coffea canephora HOM05D004305 ORTHO05D005159 8.2e-27 125.9 489 29.4
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 3.1e-26 124.0 479 32.4
Potri.011G162400 Populus trichocarpa HOM05D004305 ORTHO05D005159 3.1e-26 124.0 513 29.8
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 4.1e-26 123.6 485 30.3
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 4.1e-26 123.6 488 31.4
Lsat_1_v5_gn_9_25860 Lactuca sativa HOM05D004305 ORTHO05D005159 4.1e-26 123.6 470 30.6
PGSC0003DMG400021011 Solanum tuberosum HOM05D004305 ORTHO05D005159 4.1e-26 123.6 490 31.2
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 6.9e-26 122.9 469 30.5
SGA_v2.0_scaffold1G00275 Striga asiatica HOM05D004305 ORTHO05D005159 2.0e-25 121.3 490 29.4
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 3.4e-25 120.6 478 32.0
Nitab4.5_0000076g0140 Nicotiana tabacum HOM05D004305 ORTHO05D005159 1.7e-24 118.2 502 31.1
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 2.2e-24 117.9 482 32.8
Duzib235G0167 Durio zibethinus HOM05D004305 ORTHO05D005159 2.2e-24 117.9 471 30.6
Peaxi162Scf00395g00054 Petunia axillaris HOM05D004305 ORTHO05D005159 2.2e-24 117.9 486 31.1
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 3.8e-24 117.1 480 31.7
Nitab4.5_0004204g0010 Nicotiana tabacum HOM05D004305 ORTHO05D005159 3.2e-23 114.0 503 30.6
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 4.2e-23 113.6 483 31.5
Lj4g0027556 Lotus japonicus HOM05D004305 ORTHO05D005159 5.5e-23 113.2 492 29.7
Solyc02g022920.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 5.5e-23 113.2 494 29.8
Sp7g18970 Schrenkiella parvula HOM05D004305 ORTHO05D005159 9.4e-23 112.5 485 29.9
Manes.06G058700 Manihot esculenta HOM05D004305 ORTHO05D005159 1.2e-22 112.1 501 30.1
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 1.2e-22 112.1 491 30.8
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 1.6e-22 111.7 490 30.6
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 1.6e-22 111.7 490 30.6
ClCG01G025280 Citrullus lanatus HOM05D004305 ORTHO05D005159 2.7e-22 110.9 395 31.1
Nitab4.5_0001583g0210 Nicotiana tabacum HOM05D004305 ORTHO05D005159 2.7e-22 110.9 246 37.8
Ca_00869_v3 Cicer arietinum L. HOM05D004305 ORTHO05D005159 3.6e-22 110.5 492 30.7
Sc03g0008520 Simmondsia chinensis HOM05D004305 ORTHO05D005159 4.6e-22 110.2 212 39.6
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 7.9e-22 109.4 453 31.8
THA.LOC104812214 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 1.0e-21 109.0 480 30.0
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 2.3e-21 107.8 491 29.9
Nn1g03508 Nelumbo nucifera HOM05D004305 ORTHO05D005159 2.3e-21 107.8 495 29.7
Solyc02g070040.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 3.0e-21 107.5 481 29.1
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 5.1e-21 106.7 476 32.4
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 6.7e-21 106.3 467 32.3
Sopen02g019200 Solanum pennellii HOM05D004305 ORTHO05D005159 6.7e-21 106.3 479 29.4
QL05p063597 Quercus lobata HOM05D004305 ORTHO05D005159 1.1e-20 105.5 496 30.0
BraA01t01174Z Brassica rapa HOM05D004305 ORTHO05D005159 1.5e-20 105.1 487 29.2
CsaV3_6G052500 Cucumis sativus L. HOM05D004305 ORTHO05D005159 2.0e-20 104.8 372 32.8
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 2.0e-20 104.8 485 27.8
QL93p0201_0023 Quercus lobata HOM05D004305 ORTHO05D005159 2.5e-20 104.4 496 30.2
ECA247G2099 Erigeron canadensis HOM05D004305 ORTHO05D005159 3.3e-20 104.0 473 30.7
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 3.3e-20 104.0 499 29.7
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 5.7e-20 103.2 483 30.6
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 5.7e-20 103.2 519 28.9
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 7.4e-20 102.8 477 30.8
Medtr2g031350 Medicago truncatula HOM05D004305 ORTHO05D005159 1.3e-19 102.1 503 28.2
Sopen02g006550 Solanum pennellii HOM05D004305 ORTHO05D005159 1.3e-19 102.1 470 30.0
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 1.7e-19 101.7 491 28.7
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 2.8e-19 100.9 478 31.0
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 2.8e-19 100.9 479 29.9
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 2.8e-19 100.9 482 29.0
PGSC0003DMG400021114 Solanum tuberosum HOM05D004305 ORTHO05D005159 2.8e-19 100.9 467 27.6
Lalb_Chr18g0058121 Lupinus albus HOM05D004305 ORTHO05D005159 6.3e-19 99.8 481 28.1
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 1.8e-18 98.2 238 35.7
PGR083G0011 Punica granatum HOM05D004305 ORTHO05D005159 2.4e-18 97.8 217 39.2
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 4.1e-18 97.1 478 29.7
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 4.1e-18 97.1 478 29.7
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 5.3e-18 96.7 479 27.8
SGA_v2.0_scaffold223G42870 Striga asiatica HOM05D004305 ORTHO05D005159 6.9e-18 96.3 479 29.2
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 9.1e-18 95.9 468 29.9
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 9.1e-18 95.9 468 29.9
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 7.7e-17 92.8 482 28.6
Lalb_Chr07g0189031 Lupinus albus HOM05D004305 ORTHO05D005159 1.3e-16 92.0 506 28.9
MBI02_g39880_MAGBIO Magnolia biondii HOM05D004305 ORTHO05D005159 2.2e-16 91.3 554 26.7
EL10Ac4g07786 Beta vulgaris HOM05D023924 ORTHO05D023401 1.1e-15 89.0 597 26.0
AUR62014849 Chenopodium quinoa HOM05D002349 ORTHO05D002464 1.9e-15 88.2 60 70.0
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 1.9e-15 88.2 83 56.6
Sed0024509 Sechium edule HOM05D004305 ORTHO05D005159 4.2e-15 87.0 477 28.9
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 5.5e-15 86.7 201 38.3
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 7.2e-15 86.3 477 28.7
Gorai.010G144500 Gossypium raimondii HOM05D004305 ORTHO05D005159 7.2e-15 86.3 55 78.2
Gohir.D06G124500 Gossypium hirsutum HOM05D004305 ORTHO05D005159 2.1e-14 84.7 55 74.5
Gohir.A06G119900 Gossypium hirsutum HOM05D004305 ORTHO05D005159 1.0e-13 82.4 85 60.0
C07p27080 Brassica napus HOM05D004305 ORTHO05D005159 2.3e-13 81.3 216 33.8
Lj6g0010125 Lotus japonicus HOM05D004305 ORTHO05D005159 3.0e-13 80.9 483 28.6
unitig_32.g10874 Utricularia gibba HOM05D004305 ORTHO05D005159 3.0e-13 80.9 223 30.5
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 5.1e-13 80.1 210 35.7
BcaC06g34566 Brassica carinata HOM05D004305 ORTHO05D005159 6.7e-13 79.7 216 33.3
BcaB07g30530 Brassica carinata HOM05D004305 ORTHO05D005159 8.8e-13 79.3 212 34.9
unitig_748.g8282 Utricularia gibba HOM05D004305 ORTHO05D005159 1.5e-12 78.6 222 30.6
BcaC06g31624 Brassica carinata HOM05D004305 ORTHO05D005159 2.6e-12 77.8 86 51.2
BraA06t27598Z Brassica rapa HOM05D004305 ORTHO05D005159 5.7e-12 76.6 210 34.3
Thhalv10003311m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 5.7e-12 76.6 59 64.4
BraA02t07875Z Brassica rapa HOM05D004305 ORTHO05D005159 9.7e-12 75.9 212 33.5
RcHm_v2.0_Chr2g0145901 Rosa chinensis HOM05D004305 ORTHO05D035653 1.7e-11 75.1 214 30.4
Ah.04g165990 Amaranthus hybridus HOM05D023924 ORTHO05D023401 2.2e-11 74.7 560 27.1
BcaC03g16656 Brassica carinata HOM05D004305 ORTHO05D005159 4.8e-11 73.6 60 56.7
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 4.8e-11 73.6 217 33.2
A02p28380 Brassica napus HOM05D004305 ORTHO05D005159 8.2e-11 72.8 214 35.0
A06p47270 Brassica napus HOM05D004305 ORTHO05D005159 8.2e-11 72.8 62 53.2
BolC7t43238H Brassica oleracea HOM05D004305 ORTHO05D005159 1.1e-10 72.4 216 32.4
Nn1g07139 Nelumbo nucifera HOM05D004305 ORTHO05D005159 1.1e-10 72.4 190 35.8
Psat7g094000 Pisum sativum HOM05D004305 ORTHO05D005159 1.1e-10 72.4 479 25.3
unitig_748.g7348 Utricularia gibba HOM05D004305 ORTHO05D005159 1.8e-10 71.6 202 32.7
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 2.4e-10 71.2 470 26.6
SHI24805 Sapria himalayana HOM05D004305 ORTHO05D005159 7.0e-10 69.7 69 53.6
BcaC04g21838 Brassica carinata HOM05D004305 ORTHO05D005159 9.1e-10 69.3 215 33.0
C09p26810 Brassica napus HOM05D004305 ORTHO05D005159 9.1e-10 69.3 215 33.0
BolC9t55570H Brassica oleracea HOM05D004305 ORTHO05D005159 1.2e-09 68.9 80 47.5
unitig_32.g11679 Utricularia gibba HOM05D004305 ORTHO05D005159 1.5e-09 68.6 104 43.3
FvH4_6g34930 Fragaria vesca HOM05D004305 ORTHO05D035653 7.7e-09 66.2 225 29.8
Medtr4g094532 Medicago truncatula HOM05D004305 ORTHO05D005159 7.7e-09 66.2 357 25.8
FAN14G2350 Fragaria x ananassa HOM05D004305 ORTHO05D035653 6.5e-08 63.2 222 28.4
DCAR_000175 Daucus carota HOM05D033909 ORTHO05D005159 8.5e-08 62.8 316 26.9
DCAR_000842 Daucus carota HOM05D033909 ORTHO05D005159 8.5e-08 62.8 316 26.9
A09p21070 Brassica napus HOM05D004305 ORTHO05D005159 1.5e-07 62.0 218 30.7
Sed0021635 Sechium edule HOM05D004305 ORTHO05D005159 1.5e-07 62.0 405 25.9
Carub.0008s0412 Capsella rubella HOM05D004305 ORTHO05D005159 2.5e-07 61.2 202 33.7
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 2.5e-07 61.2 240 30.0
BcaB07g30950 Brassica carinata HOM05D004305 ORTHO05D005159 5.5e-07 60.1 218 28.4
BolC2t10530H Brassica oleracea HOM05D004305 ORTHO05D005159 1.2e-06 58.9 196 35.2
Aqoxy1G01487 Aquilegia oxysepala HOM05D004305 ORTHO05D005159 1.6e-06 58.5 490 25.5
AT5G44350 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 2.7e-06 57.8 200 32.0
Sed0021177 Sechium edule HOM05D004305 ORTHO05D005159 4.7e-06 57.0 55 56.4


User provided reference genes

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