Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026981 Camellia sinensis var. sinensis HOM05D003141 ORTHO05D003633 0.0e+00 1600.1 819 100.0
CSS0047611 Camellia sinensis var. sinensis HOM05D003141 ORTHO05D003633 1.6e-232 810.1 852 57.3
Dinv21645 Davidia involucrata HOM05D003141 ORTHO05D003633 5.7e-206 721.8 850 52.1
Actinidia14419 Actinidia chinensis HOM05D003141 ORTHO05D003633 1.7e-181 640.6 839 48.9
Dinv39155 Davidia involucrata HOM05D003141 ORTHO05D003633 2.4e-180 636.7 804 49.6
vmacro00195 Vaccinium macrocarpon HOM05D003141 ORTHO05D003633 5.6e-161 572.4 770 48.6
Rhsim07G0109900 Rhododendron simsii HOM05D000370 ORTHO05D007301 9.3e-148 528.5 608 53.3
QL12p011773 Quercus lobata HOM05D003141 ORTHO05D003633 3.5e-123 446.8 850 39.8
QL12p011944 Quercus lobata HOM05D003141 ORTHO05D003633 7.9e-123 445.7 850 39.8
Lj8A264T56 Lonicera japonica HOM05D003141 ORTHO05D003633 2.5e-121 440.7 784 41.2
Haze_07903 Corylus avellana HOM05D003141 ORTHO05D003633 7.2e-116 422.5 854 38.9
TAR374G0926 Trochodendron aralioides HOM05D003141 ORTHO05D003633 5.0e-109 399.8 851 38.7
Hma1.2p1_0316F.1_g123020 Hydrangea macrophylla HOM05D003141 ORTHO05D003633 1.8e-106 391.3 813 38.3
TAR636G0976 Trochodendron aralioides HOM05D003141 ORTHO05D003633 1.7e-104 384.8 843 36.9
TAR629G2689 Trochodendron aralioides HOM05D003141 ORTHO05D003633 1.8e-98 364.8 885 35.8
GSVIVG01004716001 Vitis vinifera HOM05D003141 ORTHO05D003633 5.3e-95 353.2 823 35.1
Prupe.5G068000 Prunus persica HOM05D003141 ORTHO05D003633 2.6e-94 350.9 906 35.4
MD04G1062800 Malus domestica HOM05D003141 ORTHO05D003633 3.5e-94 350.5 896 34.3
MD06G1057100 Malus domestica HOM05D003141 ORTHO05D003633 5.9e-94 349.7 914 35.2
TAR629G2174 Trochodendron aralioides HOM05D003141 ORTHO05D003633 7.7e-94 349.4 919 34.9
CiPaw.12G051500 Carya illinoinensis HOM05D003141 ORTHO05D003633 2.9e-93 347.4 734 37.2
Actinidia31518 Actinidia chinensis HOM05D003141 ORTHO05D003633 8.5e-85 319.3 430 47.0
Nn6g33922 Nelumbo nucifera HOM05D003141 ORTHO05D003633 3.4e-81 307.4 824 33.0
Atru.chr9.1295 Acer truncatum HOM05D003141 ORTHO05D003633 4.8e-80 303.5 773 34.9
Cc08_g12310 Coffea canephora HOM05D003141 ORTHO05D003633 7.0e-79 299.7 793 33.3
Lalb_Chr05g0221221 Lupinus albus HOM05D003141 ORTHO05D003633 2.1e-75 288.1 643 34.5
Migut.A01111 Erythranthe guttata HOM05D003141 ORTHO05D003633 3.6e-75 287.3 809 33.5
TWI15G0894 Tripterygium wilfordii HOM05D003141 ORTHO05D003633 3.0e-74 284.3 806 31.5
Ciclev10018443m.g Citrus clementina HOM05D003141 ORTHO05D003633 5.7e-73 280.0 762 33.3
Manes.01G081400 Manihot esculenta HOM05D003141 ORTHO05D003633 2.8e-72 277.7 790 32.3
Manes.02G040600 Manihot esculenta HOM05D003141 ORTHO05D003633 6.3e-72 276.6 789 34.2
CANSAT21G0191 Cannabis sativa HOM05D003141 ORTHO05D003633 1.4e-71 275.4 655 34.7
Duzib068G0714 Durio zibethinus HOM05D003141 ORTHO05D003633 4.1e-71 273.9 833 31.2
RcHm_v2.0_Chr7g0203541 Rosa chinensis HOM05D003141 ORTHO05D003633 9.2e-71 272.7 950 31.3
Oeu020432.4 Olea europaea HOM05D003141 ORTHO05D003633 3.5e-70 270.8 750 34.7
Ca_24583_v3 Cicer arietinum L. HOM05D003141 ORTHO05D003633 1.1e-68 265.8 824 30.5
ClCG10G002580 Citrullus lanatus HOM05D003141 ORTHO05D003633 4.3e-68 263.8 804 30.2
Potri.001G157300 Populus trichocarpa HOM05D003141 ORTHO05D003633 3.6e-67 260.8 817 32.1
Nn1g00964 Nelumbo nucifera HOM05D003141 ORTHO05D003633 8.0e-67 259.6 816 31.2
TWI81G0497 Tripterygium wilfordii HOM05D003141 ORTHO05D003633 8.0e-67 259.6 779 30.9
Gorai.004G197800 Gossypium raimondii HOM05D003141 ORTHO05D003633 1.0e-66 259.2 589 37.5
Gohir.D08G187900 Gossypium hirsutum HOM05D003141 ORTHO05D003633 2.3e-66 258.1 591 37.4
MSTRG.12108 Avicennia marina HOM05D003141 ORTHO05D003633 2.0e-65 255.0 828 31.8
Thecc.03G249800 Theobroma cacao HOM05D003141 ORTHO05D003633 2.6e-65 254.6 754 33.0
Lalb_Chr05g0214411 Lupinus albus HOM05D003141 ORTHO05D003633 3.4e-65 254.2 657 33.3
COL.COLO4_37160 Corchorus olitorius HOM05D003141 ORTHO05D003633 7.5e-65 253.1 860 30.7
Nitab4.5_0001381g0110 Nicotiana tabacum HOM05D003141 ORTHO05D003633 7.5e-65 253.1 838 31.9
CAN.G1058.41 Capsicum annuum HOM05D003141 ORTHO05D003633 2.9e-64 251.1 799 31.3
Gohir.A08G169600 Gossypium hirsutum HOM05D003141 ORTHO05D003633 4.9e-64 250.4 708 34.3
Lj2C219G10 Lonicera japonica HOM05D003141 ORTHO05D003633 8.3e-64 249.6 343 45.8
Cpa.g.sc29.173 Carica papaya HOM05D003141 ORTHO05D003633 1.4e-63 248.8 440 41.4
Psat4g072560 Pisum sativum HOM05D003141 ORTHO05D003633 1.8e-63 248.4 383 41.8
Glyma.05G060300 Glycine max HOM05D003141 ORTHO05D003633 2.4e-63 248.1 850 29.1
SGA_v2.0_scaffold199G41175 Striga asiatica HOM05D003141 ORTHO05D003633 2.4e-63 248.1 740 32.3
Lj4g0011011 Lotus japonicus HOM05D003141 ORTHO05D003633 4.1e-63 247.3 837 30.5
TPR.G18122 Trifolium pratense HOM05D003141 ORTHO05D003633 4.1e-63 247.3 848 30.2
FAN08G3437 Fragaria x ananassa HOM05D003141 ORTHO05D003633 5.4e-63 246.9 400 42.0
Nitab4.5_0002289g0020 Nicotiana tabacum HOM05D003141 ORTHO05D003633 5.4e-63 246.9 843 31.1
arahy.Tifrunner.gnm1.ann1.ZLH3PG Arachis hypogaea HOM05D003141 ORTHO05D003633 7.0e-63 246.5 629 35.0
MELO3C013931.2 Cucumis melo HOM05D003141 ORTHO05D003633 7.0e-63 246.5 809 30.5
FvH4_5g19090 Fragaria vesca HOM05D003141 ORTHO05D003633 1.2e-62 245.7 384 43.0
FAN18G0989 Fragaria x ananassa HOM05D003141 ORTHO05D003633 1.2e-62 245.7 384 43.0
Sabra01G0134100 Salix brachista HOM05D003141 ORTHO05D003633 1.2e-62 245.7 802 30.8
FAN13G0222 Fragaria x ananassa HOM05D003141 ORTHO05D003633 1.6e-62 245.4 384 42.7
Duzib205G1689 Durio zibethinus HOM05D003141 ORTHO05D003633 2.0e-62 245.0 727 32.3
Gohir.D12G218900 Gossypium hirsutum HOM05D003141 ORTHO05D003633 2.0e-62 245.0 590 35.3
Oeu019602.2 Olea europaea HOM05D003141 ORTHO05D003633 2.7e-62 244.6 393 44.8
Gorai.008G234500 Gossypium raimondii HOM05D003141 ORTHO05D003633 3.5e-62 244.2 590 35.4
Peaxi162Scf00209g00005 Petunia axillaris HOM05D003141 ORTHO05D003633 3.5e-62 244.2 795 32.2
Gohir.A12G216300 Gossypium hirsutum HOM05D003141 ORTHO05D003633 5.9e-62 243.4 595 35.1
CsaV3_3G002610 Cucumis sativus L. HOM05D003141 ORTHO05D003633 7.8e-62 243.0 794 30.7
DCAR_008496 Daucus carota HOM05D003141 ORTHO05D003633 1.3e-61 242.3 441 38.3
arahy.Tifrunner.gnm1.ann1.YK7683 Arachis hypogaea HOM05D003141 ORTHO05D003633 6.6e-61 240.0 695 33.5
Lalb_Chr09g0330011 Lupinus albus HOM05D003141 ORTHO05D003633 6.6e-61 240.0 950 27.9
Potri.003G077600 Populus trichocarpa HOM05D003141 ORTHO05D003633 5.6e-60 236.9 775 32.4
Glyma.01G208600 Glycine max HOM05D003141 ORTHO05D003633 3.6e-59 234.2 856 30.5
Phvul.003G221300 Phaseolus vulgaris HOM05D003141 ORTHO05D003633 6.2e-59 233.4 617 32.4
Solyc08g078530.4 Solanum lycopersicum HOM05D003141 ORTHO05D003633 6.2e-59 233.4 800 31.5
Glyma.11G033600 Glycine max HOM05D003141 ORTHO05D003633 8.0e-59 233.0 852 29.9
FAN04G0074 Fragaria x ananassa HOM05D003141 ORTHO05D003633 1.4e-58 232.3 295 49.8
SGA_v2.0_scaffold104G30161 Striga asiatica HOM05D003141 ORTHO05D003633 1.4e-58 232.3 717 32.2
Sopen08g027010 Solanum pennellii HOM05D003141 ORTHO05D003633 1.8e-58 231.9 788 32.1
Sabra03G0047900 Salix brachista HOM05D003141 ORTHO05D003633 5.2e-58 230.3 836 30.1
Medtr4g100800 Medicago truncatula HOM05D003141 ORTHO05D003633 8.9e-58 229.6 400 41.8
Ca_21973_v3 Cicer arietinum L. HOM05D003141 ORTHO05D003633 2.6e-57 228.0 433 37.4
Sed0019628 Sechium edule HOM05D003141 ORTHO05D003633 3.4e-57 227.6 830 29.9
MSTRG.25519 Avicennia marina HOM05D003141 ORTHO05D003633 5.8e-57 226.9 804 30.8
Gohir.D11G026200 Gossypium hirsutum HOM05D003141 ORTHO05D003633 5.8e-57 226.9 253 53.8
Phvul.002G057800 Phaseolus vulgaris HOM05D003141 ORTHO05D003633 7.5e-57 226.5 384 40.9
PGR042G4011 Punica granatum HOM05D003141 ORTHO05D003633 1.7e-56 225.3 844 29.5
VMungo0251G2467 Vigna mungo HOM05D003141 ORTHO05D003633 2.2e-56 224.9 671 31.1
Medtr5g012780 Medicago truncatula HOM05D003141 ORTHO05D003633 2.9e-56 224.6 736 31.4
SalBow6G4258 Salvia bowleyana HOM05D003141 ORTHO05D003633 2.9e-56 224.6 826 30.5
Sc07g0009290 Simmondsia chinensis HOM05D003141 ORTHO05D003633 6.4e-56 223.4 807 30.0
Lj2g0024874 Lotus japonicus HOM05D003141 ORTHO05D003633 8.3e-56 223.0 790 29.0
Gorai.007G028500 Gossypium raimondii HOM05D003141 ORTHO05D003633 4.1e-55 220.7 730 31.2
ECA240G2052 Erigeron canadensis HOM05D003141 ORTHO05D003633 7.0e-55 219.9 455 38.0
TPR.G37647 Trifolium pratense HOM05D003141 ORTHO05D003633 3.5e-54 217.6 300 45.7
DCAR_006836 Daucus carota HOM05D003141 ORTHO05D003633 5.0e-53 213.8 636 31.9
Psat2g177640 Pisum sativum HOM05D003141 ORTHO05D003633 1.5e-52 212.2 894 26.6
VMungo1215G1426 Vigna mungo HOM05D003141 ORTHO05D003633 1.5e-52 212.2 898 27.5
EL10Ac5g12387 Beta vulgaris HOM05D003141 ORTHO05D003633 1.9e-52 211.8 619 30.9
Eucgr.D02089 Eucalyptus grandis HOM05D003141 ORTHO05D003633 1.6e-51 208.8 793 27.5
Aa31LG6G80 Aethionema arabicum HOM05D003141 ORTHO05D003633 5.2e-50 203.8 191 57.6
Ah.12g053640 Amaranthus hybridus HOM05D003141 ORTHO05D003633 3.4e-49 201.1 620 31.8
MBI04_g09516_MAGBIO Magnolia biondii HOM05D003141 ORTHO05D003633 3.4e-49 201.1 216 53.7
ECA233G3821 Erigeron canadensis HOM05D003141 ORTHO05D003633 3.2e-47 194.5 276 47.8
AUR62019955 Chenopodium quinoa HOM05D003141 ORTHO05D003633 4.1e-47 194.1 841 28.4
AUR62007092 Chenopodium quinoa HOM05D003141 ORTHO05D003633 5.4e-47 193.7 621 32.0
AT4G17330 Arabidopsis thaliana HOM05D003141 ORTHO05D003633 1.2e-46 192.6 309 43.4
Sp7g16850 Schrenkiella parvula HOM05D003141 ORTHO05D003633 1.6e-46 192.2 230 48.7
Aqoxy7G00802 Aquilegia oxysepala HOM05D003141 ORTHO05D003633 2.1e-46 191.8 787 27.7
AL7G37390 Arabidopsis lyrata HOM05D003141 ORTHO05D003633 2.7e-46 191.4 284 43.7
Hund14553 Selenicereus undatus HOM05D003141 ORTHO05D003633 7.8e-46 189.9 315 40.0
Thhalv10024186m.g Eutrema salsugineum HOM05D003141 ORTHO05D003633 1.0e-45 189.5 183 55.7
DCAR_027770 Daucus carota HOM05D003141 ORTHO05D003633 1.3e-45 189.1 464 34.7
CARHR223940 Cardamine hirsuta HOM05D003141 ORTHO05D003633 8.6e-45 186.4 238 47.1
Carub.0007s2408 Capsella rubella HOM05D003141 ORTHO05D003633 1.1e-44 186.0 143 66.4
Lsat_1_v5_gn_6_90740 Lactuca sativa HOM05D003141 ORTHO05D003633 1.6e-43 182.2 281 45.9
unitig_21.g20317 Utricularia gibba HOM05D003141 ORTHO05D003633 4.7e-43 180.6 339 38.9
unitig_744.g24473 Utricularia gibba HOM05D003141 ORTHO05D003633 9.2e-39 166.4 149 58.4
HanXRQChr16g0510701 Helianthus annuus HOM05D003141 ORTHO05D003633 1.2e-38 166.0 229 48.5
Sc22g0000930 Simmondsia chinensis HOM05D003141 ORTHO05D003633 2.7e-38 164.9 555 31.7
BcaC06g33544 Brassica carinata HOM05D003141 ORTHO05D003633 1.7e-37 162.2 204 49.5
PSO170G6315 Papaver somniferum HOM05D003141 ORTHO05D003633 1.1e-36 159.5 216 50.5
A08p13070 Brassica napus HOM05D003141 ORTHO05D003633 2.8e-35 154.8 150 59.3
A08p13120 Brassica napus HOM05D003141 ORTHO05D003633 2.8e-35 154.8 150 59.3
CDE04G1375 Ceratophyllum demersum HOM05D003141 ORTHO05D003633 3.6e-35 154.5 278 39.6
BraA08t33288Z Brassica rapa HOM05D003141 ORTHO05D003633 8.1e-35 153.3 150 58.0
Actinidia01823 Actinidia chinensis HOM05D003141 ORTHO05D003633 1.4e-34 152.5 242 44.2
BraA08t33285Z Brassica rapa HOM05D003141 ORTHO05D003633 1.8e-34 152.1 126 64.3
BolC8t48452H Brassica oleracea HOM05D003141 ORTHO05D003633 8.9e-34 149.8 147 59.2
BolC8t48462H Brassica oleracea HOM05D003141 ORTHO05D003633 8.9e-34 149.8 147 59.2
Zm00001eb391270 Zea mays HOM05D003141 ORTHO05D003633 8.9e-34 149.8 149 57.7
BcaC07g38062 Brassica carinata HOM05D003141 ORTHO05D003633 1.2e-33 149.4 147 59.2
BcaC07g38055 Brassica carinata HOM05D003141 ORTHO05D003633 1.5e-33 149.1 147 59.2
BraA08t33284Z Brassica rapa HOM05D003141 ORTHO05D003633 3.4e-33 147.9 368 35.6
SHI20297 Sapria himalayana HOM05D003141 ORTHO05D003633 1.3e-32 146.0 530 28.7
BcaC07g38056 Brassica carinata HOM05D003141 ORTHO05D003633 2.2e-32 145.2 227 43.2
CDE02G1173 Ceratophyllum demersum HOM05D003141 ORTHO05D003633 4.9e-32 144.1 278 37.4
Os10g0559700 Oryza sativa ssp. japonica HOM05D003141 ORTHO05D003633 2.4e-31 141.7 144 54.9
ATR0317G002 Amborella trichopoda HOM05D003141 ORTHO05D003633 9.3e-31 139.8 296 37.5
Actinidia10833 Actinidia chinensis HOM05D003141 ORTHO05D003633 2.1e-30 138.7 157 52.2
Psat4g091200 Pisum sativum HOM05D003141 ORTHO05D003633 3.5e-30 137.9 361 32.4
HanXRQChr17g0549311 Helianthus annuus HOM05D003141 ORTHO05D003633 3.9e-29 134.4 192 46.9
HanXRQChr03g0087821 Helianthus annuus HOM05D003141 ORTHO05D003633 4.3e-28 131.0 255 38.8
TAR375G1127 Trochodendron aralioides HOM05D003141 ORTHO05D003633 1.8e-26 125.6 522 28.9
BcaNung00101 Brassica carinata HOM05D003141 ORTHO05D003633 2.4e-26 125.2 219 39.7
PSO017G2158 Papaver somniferum HOM05D003141 ORTHO05D003633 6.9e-26 123.6 224 42.4
Psat4g091400 Pisum sativum HOM05D003141 ORTHO05D003633 1.7e-24 119.0 357 29.7
Psat2g028160 Pisum sativum HOM05D003141 ORTHO05D003633 4.9e-24 117.5 257 37.7
Psat4g076880 Pisum sativum HOM05D003141 ORTHO05D003633 4.9e-24 117.5 353 30.6
GSVIVG01006991001 Vitis vinifera HOM05D003141 ORTHO05D003633 4.8e-19 100.9 354 31.4
Actinidia27472 Actinidia chinensis HOM05D003141 ORTHO05D003633 3.2e-15 88.2 400 25.0
vmacro10680 Vaccinium macrocarpon HOM05D045886 ORTHO05D030908 1.1e-10 73.2 94 48.9
vmacro22442 Vaccinium macrocarpon HOM05D045886 ORTHO05D030908 1.1e-10 73.2 94 48.9
HPP92_022418 Vanilla planifolia HOM05D003141 ORTHO05D003633 8.4e-08 63.5 523 23.3
Actinidia27473 Actinidia chinensis HOM05D003141 ORTHO05D003633 4.2e-07 61.2 119 38.7
GSVIVG01010786001 Vitis vinifera HOM05D003141 ORTHO05D003633 2.1e-06 58.9 33 78.8
Gohir.A11G027000 Gossypium hirsutum HOM05D003141 ORTHO05D003633 2.7e-06 58.5 152 34.2


User provided reference genes

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