Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026970 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 7.8e-121 437.2 229 100.0
CSS0005105 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 1.5e-116 422.9 229 97.8
CSS0037888 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 1.5e-116 422.9 229 97.8
CSS0039716 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 2.2e-115 419.1 229 96.9
CSS0042483 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 2.5e-58 229.6 218 57.8
CSS0007712 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 3.2e-58 229.2 215 58.6
CSS0000180 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 2.7e-57 226.1 217 57.6
CSS0026212 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 8.6e-51 204.5 149 65.1
CSS0009810 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 1.1e-50 204.1 149 64.4
CSS0013208 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 2.4e-37 159.8 143 56.6
FvH4_3g22812 Fragaria vesca HOM05D023520 ORTHO05D025365 1.2e-17 94.4 142 29.6
RcHm_v2.0_Chr4g0402051 Rosa chinensis HOM05D000791 ORTHO05D000669 2.1e-17 93.6 144 34.0
PGR004G1992 Punica granatum HOM05D000791 ORTHO05D000669 1.2e-15 87.8 224 29.5
MBI02_g29975_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 2.0e-15 87.0 173 27.7
MBI16_g34343_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 4.4e-15 85.9 173 29.5
Rhsim03G0202300 Rhododendron simsii HOM05D017301 ORTHO05D000669 5.8e-15 85.5 176 27.3
FAN10G2090 Fragaria x ananassa HOM05D008705 ORTHO05D000669 7.6e-15 85.1 148 29.7
FAN10G3855 Fragaria x ananassa HOM05D008705 ORTHO05D000669 7.6e-15 85.1 148 29.7
Rhsim09G0047300 Rhododendron simsii HOM05D000107 ORTHO05D000062 7.6e-15 85.1 149 30.2
PSO384G0881 Papaver somniferum HOM05D017761 ORTHO05D000669 1.9e-13 80.5 153 32.7
TPR.G36323 Trifolium pratense HOM05D008291 ORTHO05D003568 4.2e-13 79.3 111 30.6
MBI19_g01025_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 2.1e-12 77.0 202 26.7
PSO210G0630 Papaver somniferum HOM05D030578 ORTHO05D000669 4.6e-12 75.9 154 26.6
RcHm_v2.0_Chr4g0385011 Rosa chinensis HOM05D008705 ORTHO05D000669 4.6e-12 75.9 171 25.7
MBI12_g43234_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 6.0e-12 75.5 163 25.2
vmacro01281 Vaccinium macrocarpon HOM05D017301 ORTHO05D000669 6.0e-12 75.5 104 34.6
MBI07_g22513_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 7.8e-12 75.1 163 27.0
FAN09G3738 Fragaria x ananassa HOM05D008705 ORTHO05D001863 1.0e-11 74.7 132 30.3
FAN20G1055 Fragaria x ananassa HOM05D008705 ORTHO05D001863 2.3e-11 73.6 147 29.3
TWI38G2136 Tripterygium wilfordii HOM05D003120 ORTHO05D000669 2.3e-11 73.6 155 31.6
MBI09_g39165_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 3.0e-11 73.2 148 30.4
Dinv01181 Davidia involucrata HOM05D000791 ORTHO05D000669 5.1e-11 72.4 150 26.7
MBI18_g01981_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 5.1e-11 72.4 173 26.0
PGR044G2317 Punica granatum HOM05D001309 ORTHO05D000385 6.6e-11 72.0 139 34.5
Sopen09g001250 Solanum pennellii HOM05D008291 ORTHO05D000669 1.9e-10 70.5 178 25.8
Dinv16095 Davidia involucrata HOM05D000791 ORTHO05D000669 3.3e-10 69.7 179 24.6
MBI08_g19110_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 3.3e-10 69.7 114 25.4
PGSC0003DMG400001138 Solanum tuberosum HOM05D008892 ORTHO05D010661 3.3e-10 69.7 178 30.3
Dinv24767 Davidia involucrata HOM05D000791 ORTHO05D000669 7.3e-10 68.6 177 26.0
Dinv31455 Davidia involucrata HOM05D000791 ORTHO05D000669 7.3e-10 68.6 177 26.0
Dinv12412 Davidia involucrata HOM05D010418 ORTHO05D000669 9.6e-10 68.2 148 26.4
TPR.G6754 Trifolium pratense HOM05D008291 ORTHO05D003568 6.2e-09 65.5 155 25.8
QL93p0093_0054 Quercus lobata HOM05D003120 ORTHO05D003568 1.1e-08 64.7 162 25.9
FAN17G1365 Fragaria x ananassa HOM05D008705 ORTHO05D000669 1.8e-08 63.9 151 26.5
Rhsim01G0156700 Rhododendron simsii HOM05D007798 ORTHO05D009882 3.1e-08 63.2 163 28.8
Sopen09g022380 Solanum pennellii HOM05D008291 ORTHO05D000669 3.1e-08 63.2 149 25.5
CANSAT21G2267 Cannabis sativa HOM05D009677 ORTHO05D011883 4.0e-08 62.8 155 21.9
PSO063G4330 Papaver somniferum HOM05D017761 ORTHO05D000669 6.9e-08 62.0 121 29.8
PSO063G5169 Papaver somniferum HOM05D017761 ORTHO05D000669 6.9e-08 62.0 121 29.8
Ca_17856_v3 Cicer arietinum L. HOM05D008291 ORTHO05D003568 9.0e-08 61.6 150 22.7
Migut.I00328 Erythranthe guttata HOM05D023261 ORTHO05D000222 3.4e-07 59.7 160 26.9
FAN26G1277 Fragaria x ananassa HOM05D002291 ORTHO05D000222 3.4e-07 59.7 153 25.5
Sopen10g007560 Solanum pennellii HOM05D008291 ORTHO05D016169 3.4e-07 59.7 111 25.2
FvH4_7g09790 Fragaria vesca HOM05D009879 ORTHO05D009647 4.4e-07 59.3 144 33.3
FAN03G0178 Fragaria x ananassa HOM05D009879 ORTHO05D009647 4.4e-07 59.3 144 33.3
MD11G1169500 Malus domestica HOM05D008985 ORTHO05D000222 4.4e-07 59.3 107 29.9
RcHm_v2.0_Chr3g0476041 Rosa chinensis HOM05D008705 ORTHO05D000669 4.4e-07 59.3 73 38.4
RcHm_v2.0_Chr7g0214031 Rosa chinensis HOM05D008705 ORTHO05D000669 4.4e-07 59.3 107 26.2
FvH4_1g01701 Fragaria vesca HOM05D002291 ORTHO05D000222 5.8e-07 58.9 153 25.5
Prupe.5G199500 Prunus persica HOM05D008985 ORTHO05D000222 7.6e-07 58.5 185 25.9
RcHm_v2.0_Chr1g0381191 Rosa chinensis HOM05D008705 ORTHO05D000669 7.6e-07 58.5 107 26.2
Solyc12g082720.1 Solanum lycopersicum HOM05D008291 ORTHO05D003568 7.6e-07 58.5 149 23.5
FAN23G1656 Fragaria x ananassa HOM05D002291 ORTHO05D000222 9.9e-07 58.2 160 26.2
MBI19_g26810_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 9.9e-07 58.2 115 24.3
RcHm_v2.0_Chr2g0106131 Rosa chinensis HOM05D008705 ORTHO05D000669 9.9e-07 58.2 105 33.3
Dinv25294 Davidia involucrata HOM05D010418 ORTHO05D000669 1.3e-06 57.8 115 24.3
MELO3C034759.2 Cucumis melo HOM05D001963 ORTHO05D001863 1.7e-06 57.4 153 22.9
MBI13_g41510_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.7e-06 57.4 173 23.1
EL10Ac2g03097 Beta vulgaris HOM05D008455 ORTHO05D009597 2.2e-06 57.0 120 25.8
EL10Ac2g03454 Beta vulgaris HOM05D008455 ORTHO05D009597 2.2e-06 57.0 120 25.8
EL10Ac2g03816 Beta vulgaris HOM05D008455 ORTHO05D009597 2.2e-06 57.0 120 25.8
EL10Ac3g06519 Beta vulgaris HOM05D008455 ORTHO05D009597 2.2e-06 57.0 120 26.7
EL10Ac3g06529 Beta vulgaris HOM05D008455 ORTHO05D009597 2.2e-06 57.0 120 25.8
EL10Ac4g08902 Beta vulgaris HOM05D008455 ORTHO05D009597 2.2e-06 57.0 120 25.8
EL10Ac9g22691 Beta vulgaris HOM05D008455 ORTHO05D009597 2.2e-06 57.0 120 25.8
FAN06G1112 Fragaria x ananassa HOM05D009879 ORTHO05D009647 2.2e-06 57.0 144 32.6
RcHm_v2.0_Chr1g0346841 Rosa chinensis HOM05D009879 ORTHO05D009647 2.2e-06 57.0 157 30.6
RcHm_v2.0_Chr1g0346821 Rosa chinensis HOM05D009879 ORTHO05D009647 2.9e-06 56.6 157 31.8
RcHm_v2.0_Chr1g0345631 Rosa chinensis HOM05D008705 ORTHO05D000669 3.8e-06 56.2 107 25.2
RcHm_v2.0_Chr2g0102381 Rosa chinensis HOM05D008705 ORTHO05D000669 3.8e-06 56.2 70 37.1
Lsat_1_v5_gn_9_120520 Lactuca sativa HOM05D001309 ORTHO05D005970 8.4e-06 55.1 156 25.6
MBI18_g32090_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 8.4e-06 55.1 120 25.0


User provided reference genes

Program Settings