Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026967 Camellia sinensis var. sinensis HOM05D003664 ORTHO05D003077 7.3e-108 394.0 220 100.0
CSS0036560 Camellia sinensis var. sinensis HOM05D003664 ORTHO05D003077 1.7e-51 206.8 240 60.8
CSS0008087 Camellia sinensis var. sinensis HOM05D003664 ORTHO05D003077 2.2e-51 206.5 240 59.6
Dinv25872 Davidia involucrata HOM05D003664 ORTHO05D003077 1.8e-50 203.4 204 63.7
Dinv41078 Davidia involucrata HOM05D006151 ORTHO05D007487 1.9e-47 193.4 175 66.3
Actinidia17788 Actinidia chinensis HOM05D003664 ORTHO05D003077 7.2e-47 191.4 234 57.3
Lj7A374G24 Lonicera japonica HOM05D003664 ORTHO05D003077 8.2e-43 177.9 191 60.2
Rhsim05G0113600 Rhododendron simsii HOM05D003664 ORTHO05D003077 7.0e-42 174.9 253 52.2
Hma1.2p1_0299F.1_g117790 Hydrangea macrophylla HOM05D003664 ORTHO05D003077 5.0e-40 168.7 246 51.2
vmacro21152 Vaccinium macrocarpon HOM05D003664 ORTHO05D003077 5.2e-37 158.7 184 59.2
Sc02g0004010 Simmondsia chinensis HOM05D003664 ORTHO05D003077 7.7e-33 144.8 202 48.0
Solyc04g071510.3 Solanum lycopersicum HOM05D003664 ORTHO05D003077 5.0e-32 142.1 195 50.3
Sopen04g027480 Solanum pennellii HOM05D003664 ORTHO05D003077 1.5e-31 140.6 184 51.1
CAN.G675.1 Capsicum annuum HOM05D003664 ORTHO05D003077 7.2e-31 138.3 193 50.8
CiPaw.15G015700 Carya illinoinensis HOM05D003664 ORTHO05D003077 3.6e-30 136.0 241 44.4
Peaxi162Scf00599g00047 Petunia axillaris HOM05D003664 ORTHO05D003077 1.0e-29 134.4 179 52.5
Ciclev10002059m.g Citrus clementina HOM05D003664 ORTHO05D003077 1.8e-29 133.7 184 50.0
Prupe.8G031500 Prunus persica HOM05D003664 ORTHO05D003077 1.8e-29 133.7 214 46.7
Cfa018318 Carpinus fangiana HOM05D006151 ORTHO05D007487 4.0e-29 132.5 179 50.3
Haze_17759 Corylus avellana HOM05D003664 ORTHO05D003077 4.0e-29 132.5 179 49.7
Cpa.g.sc21.207 Carica papaya HOM05D003664 ORTHO05D003077 1.5e-28 130.6 192 51.6
CANSAT25G1346 Cannabis sativa HOM05D003664 ORTHO05D003077 3.4e-28 129.4 253 44.3
VMungo0720G2434 Vigna mungo HOM05D003664 ORTHO05D003077 9.8e-28 127.9 137 62.0
TWI60G1052 Tripterygium wilfordii HOM05D003664 ORTHO05D003077 2.2e-27 126.7 220 45.5
Phvul.007G081000 Phaseolus vulgaris HOM05D003664 ORTHO05D003077 2.8e-27 126.3 136 61.0
EL10Ac1g01559 Beta vulgaris HOM05D003664 ORTHO05D003077 1.1e-26 124.4 199 46.2
MD05G1027000 Malus domestica HOM05D003664 ORTHO05D003077 1.1e-26 124.4 211 46.4
Atru.chr13.2097 Acer truncatum HOM05D003664 ORTHO05D003077 5.4e-26 122.1 238 40.8
Manes.02G180200 Manihot esculenta HOM05D003664 ORTHO05D003077 5.4e-26 122.1 202 45.0
FAN20G2278 Fragaria x ananassa HOM05D003664 ORTHO05D003077 9.2e-26 121.3 186 48.9
Atru.chr3.87 Acer truncatum HOM05D003664 ORTHO05D003077 1.6e-25 120.6 238 40.3
Lsat_1_v5_gn_9_40961 Lactuca sativa HOM05D003664 ORTHO05D003077 2.0e-25 120.2 232 48.3
Manes.18G092700 Manihot esculenta HOM05D003664 ORTHO05D003077 5.9e-25 118.6 236 42.4
FAN15G1672 Fragaria x ananassa HOM05D003664 ORTHO05D003077 1.7e-24 117.1 188 46.8
FAN27G2664 Fragaria x ananassa HOM05D003664 ORTHO05D003077 2.3e-24 116.7 188 47.3
arahy.Tifrunner.gnm1.ann1.U157SK Arachis hypogaea HOM05D003664 ORTHO05D003077 3.8e-24 115.9 206 43.2
Sed0009435 Sechium edule HOM05D003664 ORTHO05D003077 3.8e-24 115.9 216 41.7
Duzib041G0494 Durio zibethinus HOM05D003664 ORTHO05D003077 5.0e-24 115.5 240 42.9
COL.COLO4_29845 Corchorus olitorius HOM05D003664 ORTHO05D003077 6.6e-24 115.2 244 38.9
Duzib116G0254 Durio zibethinus HOM05D003664 ORTHO05D003077 8.6e-24 114.8 237 40.5
Nitab4.5_0009071g0010 Nicotiana tabacum HOM05D003664 ORTHO05D003077 1.1e-23 114.4 241 44.8
MD10G1026300 Malus domestica HOM05D003664 ORTHO05D003077 1.5e-23 114.0 216 40.7
Ah.05g167970 Amaranthus hybridus HOM05D003664 ORTHO05D003077 1.9e-23 113.6 222 41.9
THA.LOC104810660 Tarenaya hassleriana HOM05D003664 ORTHO05D003077 2.5e-23 113.2 195 42.1
arahy.Tifrunner.gnm1.ann1.G5ZZFA Arachis hypogaea HOM05D003664 ORTHO05D003077 3.3e-23 112.8 206 42.7
Ca_10678_v3 Cicer arietinum L. HOM05D003664 ORTHO05D003077 3.3e-23 112.8 131 58.8
Nitab4.5_0001062g0080 Nicotiana tabacum HOM05D003664 ORTHO05D003077 3.3e-23 112.8 241 44.4
FvH4_2g13640 Fragaria vesca HOM05D003664 ORTHO05D003077 5.6e-23 112.1 183 47.0
Thecc.08G153700 Theobroma cacao HOM05D003664 ORTHO05D003077 5.6e-23 112.1 256 41.0
FAN24G2558 Fragaria x ananassa HOM05D003664 ORTHO05D003077 7.3e-23 111.7 184 46.7
Glyma.20G168102 Glycine max HOM05D003664 ORTHO05D003077 7.3e-23 111.7 137 56.2
HanXRQChr11g0320331 Helianthus annuus HOM05D003664 ORTHO05D003077 7.3e-23 111.7 128 57.0
Potri.005G192900 Populus trichocarpa HOM05D003664 ORTHO05D003077 9.5e-23 111.3 255 39.6
Gohir.A02G063700 Gossypium hirsutum HOM05D003664 ORTHO05D003077 1.2e-22 110.9 243 37.9
Gorai.005G078500 Gossypium raimondii HOM05D003664 ORTHO05D003077 1.2e-22 110.9 243 37.9
Psat6g192360 Pisum sativum HOM05D003664 ORTHO05D003077 1.6e-22 110.5 132 57.6
ClCG08G007040 Citrullus lanatus HOM05D003664 ORTHO05D003077 2.1e-22 110.2 195 43.1
THA.LOC104809203 Tarenaya hassleriana HOM05D003664 ORTHO05D003077 2.1e-22 110.2 195 43.1
Gohir.D02G069300 Gossypium hirsutum HOM05D003664 ORTHO05D003077 3.6e-22 109.4 243 37.4
TWI32G0127 Tripterygium wilfordii HOM05D003664 ORTHO05D003077 1.4e-21 107.5 216 40.7
CsaV3_6G005170 Cucumis sativus L. HOM05D003664 ORTHO05D003077 2.3e-21 106.7 246 40.7
RcHm_v2.0_Chr6g0275281 Rosa chinensis HOM05D003664 ORTHO05D003077 6.8e-21 105.1 192 43.8
Sabra02G0053300 Salix brachista HOM05D003664 ORTHO05D003077 6.8e-21 105.1 196 42.3
TPR.G17057 Trifolium pratense HOM05D003664 ORTHO05D003077 6.8e-21 105.1 154 50.6
Sabra05G0147400 Salix brachista HOM05D003664 ORTHO05D003077 8.9e-21 104.8 249 38.6
Glyma.10G223800 Glycine max HOM05D003664 ORTHO05D003077 2.6e-20 103.2 152 52.6
GSVIVG01034540001 Vitis vinifera HOM05D003664 ORTHO05D003077 2.6e-20 103.2 99 62.6
SalBow7G2373 Salvia bowleyana HOM05D003664 ORTHO05D003077 3.4e-20 102.8 177 45.2
Medtr1g098590 Medicago truncatula HOM05D003664 ORTHO05D003077 4.4e-20 102.4 141 53.2
Potri.002G067400 Populus trichocarpa HOM05D003664 ORTHO05D003077 4.4e-20 102.4 194 41.8
Hund26693 Selenicereus undatus HOM05D003664 ORTHO05D003077 9.8e-20 101.3 162 46.9
Nn5g28759 Nelumbo nucifera HOM05D000531 ORTHO05D003077 2.2e-19 100.1 207 41.1
PGR042G1164 Punica granatum HOM05D003664 ORTHO05D003077 2.2e-19 100.1 157 50.3
Aa31LG5G3190 Aethionema arabicum HOM05D003664 ORTHO05D003077 4.9e-19 99.0 194 41.8
Nn1g06071 Nelumbo nucifera HOM05D000531 ORTHO05D003077 4.9e-19 99.0 137 51.8
Sp2g08910 Schrenkiella parvula HOM05D003664 ORTHO05D003077 2.4e-18 96.7 185 43.2
Thhalv10003246m.g Eutrema salsugineum HOM05D003664 ORTHO05D003077 3.2e-18 96.3 196 43.4
MSTRG.1088 Avicennia marina HOM05D003664 ORTHO05D003077 1.2e-17 94.4 175 40.6
SGA_v2.0_scaffold48G17999 Striga asiatica HOM05D003664 ORTHO05D003077 1.2e-17 94.4 185 44.3
TAR381G0951 Trochodendron aralioides HOM05D000531 ORTHO05D003077 3.5e-17 92.8 195 42.6
SHI09064 Sapria himalayana HOM05D003664 ORTHO05D003077 1.3e-16 90.9 193 40.9
Carub.0008s0445 Capsella rubella HOM05D003664 ORTHO05D003077 3.0e-16 89.7 184 41.8
AL8G15970 Arabidopsis lyrata HOM05D003664 ORTHO05D003077 3.9e-16 89.4 186 41.9
TAR625G1406 Trochodendron aralioides HOM05D000531 ORTHO05D003077 5.0e-16 89.0 238 41.2
Lj5g0017671 Lotus japonicus HOM05D003664 ORTHO05D003077 1.1e-15 87.8 121 50.4
Lalb_Chr21g0305521 Lupinus albus HOM05D003664 ORTHO05D003077 1.5e-15 87.4 147 44.9
AT1G03970 Arabidopsis thaliana HOM05D003664 ORTHO05D003077 7.3e-15 85.1 129 45.0
ECA232G3156 Erigeron canadensis HOM05D003664 ORTHO05D003077 9.5e-15 84.7 131 50.4
Lalb_Chr06g0161641 Lupinus albus HOM05D003664 ORTHO05D003077 2.1e-14 83.6 134 47.8
HPP92_000067 Vanilla planifolia HOM05D000531 ORTHO05D003077 2.8e-14 83.2 137 46.7
Dinv19338 Davidia involucrata HOM05D000531 ORTHO05D003077 4.7e-14 82.4 210 38.6
Sed0018127 Sechium edule HOM05D000531 ORTHO05D003077 4.7e-14 82.4 181 41.4
C07p26710 Brassica napus HOM05D003664 ORTHO05D003077 8.0e-14 81.6 139 46.0
ClCG09G014130 Citrullus lanatus HOM05D000531 ORTHO05D003077 8.0e-14 81.6 187 40.1
BcaC06g31656 Brassica carinata HOM05D003664 ORTHO05D003077 1.0e-13 81.3 146 43.8
Duzib132G1178 Durio zibethinus HOM05D003664 ORTHO05D003077 3.1e-13 79.7 203 37.4
Dinv24251 Davidia involucrata HOM05D000531 ORTHO05D003077 4.0e-13 79.3 216 39.8
MBI17_g33113_MAGBIO Magnolia biondii HOM05D000531 ORTHO05D003077 4.0e-13 79.3 148 47.3
Hund17442 Selenicereus undatus HOM05D003664 ORTHO05D003077 4.0e-13 79.3 110 53.6
Carub.0001s0312 Capsella rubella HOM05D003664 ORTHO05D003077 8.9e-13 78.2 135 43.7
AUR62026695 Chenopodium quinoa HOM05D003664 ORTHO05D003077 1.2e-12 77.8 172 36.0
Migut.C00999 Erythranthe guttata HOM05D003664 ORTHO05D003077 1.2e-12 77.8 165 40.6
Duzib248G0788 Durio zibethinus HOM05D000531 ORTHO05D003077 1.5e-12 77.4 205 37.6
Aqoxy5G02071 Aquilegia oxysepala HOM05D000531 ORTHO05D003077 2.0e-12 77.0 248 33.9
Thecc.02G042400 Theobroma cacao HOM05D000531 ORTHO05D003077 2.0e-12 77.0 205 37.6
AL1G13580 Arabidopsis lyrata HOM05D003664 ORTHO05D003077 2.6e-12 76.6 133 43.6
AT5G44080 Arabidopsis thaliana HOM05D003664 ORTHO05D003077 2.6e-12 76.6 166 38.6
BcaC06g34596 Brassica carinata HOM05D003664 ORTHO05D003077 3.4e-12 76.3 147 42.9
BolC7t43199H Brassica oleracea HOM05D003664 ORTHO05D003077 3.4e-12 76.3 147 42.9
MELO3C014384.2 Cucumis melo HOM05D003664 ORTHO05D003077 3.4e-12 76.3 140 43.6
vmacro01795 Vaccinium macrocarpon HOM05D000531 ORTHO05D003077 3.4e-12 76.3 147 44.2
Cfa005557 Carpinus fangiana HOM05D003664 ORTHO05D003077 4.4e-12 75.9 140 45.0
VMungo0251G1704 Vigna mungo HOM05D000531 ORTHO05D003077 5.8e-12 75.5 145 43.4
CsaV3_6G037310 Cucumis sativus L. HOM05D003664 ORTHO05D003077 7.5e-12 75.1 185 36.2
Nitab4.5_0009570g0050 Nicotiana tabacum HOM05D003664 ORTHO05D003077 7.5e-12 75.1 201 37.8
PGSC0003DMG400029774 Solanum tuberosum HOM05D003664 ORTHO05D003077 9.8e-12 74.7 147 41.5
PSO447G0105 Papaver somniferum HOM05D000531 ORTHO05D003077 1.3e-11 74.3 189 38.6
Oeu023263.1 Olea europaea HOM05D003664 ORTHO05D003077 1.7e-11 73.9 196 34.7
Oeu031096.1 Olea europaea HOM05D003664 ORTHO05D003077 2.2e-11 73.6 186 34.4
CARHR003320 Cardamine hirsuta HOM05D003664 ORTHO05D003077 2.9e-11 73.2 226 34.1
BcaC05g24480 Brassica carinata HOM05D003664 ORTHO05D003077 3.7e-11 72.8 152 38.8
Duzib052G0839 Durio zibethinus HOM05D000531 ORTHO05D003077 3.7e-11 72.8 190 37.4
Thhalv10009710m.g Eutrema salsugineum HOM05D003664 ORTHO05D003077 4.9e-11 72.4 238 32.8
Lj9P315T11 Lonicera japonica HOM05D000531 ORTHO05D003077 4.9e-11 72.4 199 40.2
QL02p039006 Quercus lobata HOM05D003664 ORTHO05D003077 4.9e-11 72.4 183 37.7
Haze_01603 Corylus avellana HOM05D003664 ORTHO05D003077 6.4e-11 72.0 140 43.6
Gohir.D01G166500 Gossypium hirsutum HOM05D000531 ORTHO05D003077 8.3e-11 71.6 205 36.6
Gorai.002G207000 Gossypium raimondii HOM05D000531 ORTHO05D003077 8.3e-11 71.6 205 36.6
SGA_v2.0_scaffold145G36060 Striga asiatica HOM05D003664 ORTHO05D003077 1.9e-10 70.5 183 35.5
Phvul.002G203300 Phaseolus vulgaris HOM05D003664 ORTHO05D003077 2.4e-10 70.1 145 40.0
CiPaw.05G041300 Carya illinoinensis HOM05D000531 ORTHO05D003077 4.1e-10 69.3 146 42.5
Gohir.A01G175600 Gossypium hirsutum HOM05D000531 ORTHO05D003077 4.1e-10 69.3 205 35.6
PSO210G5664 Papaver somniferum HOM05D000531 ORTHO05D003077 4.1e-10 69.3 133 42.9
Rhsim11G0132800 Rhododendron simsii HOM05D000531 ORTHO05D003077 5.4e-10 68.9 136 44.9
Nitab4.5_0000249g0370 Nicotiana tabacum HOM05D003664 ORTHO05D003077 9.2e-10 68.2 194 35.6
Oeu032649.1 Olea europaea HOM05D000531 ORTHO05D003077 9.2e-10 68.2 220 34.5
A06p47480 Brassica napus HOM05D003664 ORTHO05D003077 1.6e-09 67.4 137 43.8
BraA06t27617Z Brassica rapa HOM05D003664 ORTHO05D003077 1.6e-09 67.4 137 43.8
CARHR179200 Cardamine hirsuta HOM05D003664 ORTHO05D003077 2.0e-09 67.0 175 36.6
Glyma.08G077400 Glycine max HOM05D003664 ORTHO05D003077 3.5e-09 66.2 135 39.3
SGA_v2.0_scaffold292G47360 Striga asiatica HOM05D003664 ORTHO05D003077 3.5e-09 66.2 167 37.7
Cc10_g14440 Coffea canephora HOM05D003664 ORTHO05D003077 4.6e-09 65.9 121 47.1
Hma1.2p1_1712F.1_g298820 Hydrangea macrophylla HOM05D000531 ORTHO05D003077 7.8e-09 65.1 209 36.8
unitig_749.g13916 Utricularia gibba HOM05D003664 ORTHO05D003077 7.8e-09 65.1 171 32.7
Migut.N01024 Erythranthe guttata HOM05D003664 ORTHO05D003077 1.0e-08 64.7 140 37.1
SGA_v2.0_scaffold332G48932 Striga asiatica HOM05D003664 ORTHO05D003077 1.0e-08 64.7 160 39.4
A10p02480 Brassica napus HOM05D003664 ORTHO05D003077 1.3e-08 64.3 228 34.2
TWI14G1120 Tripterygium wilfordii HOM05D003664 ORTHO05D003077 1.3e-08 64.3 129 40.3
ClCG09G010160 Citrullus lanatus HOM05D003664 ORTHO05D003077 1.7e-08 63.9 127 40.2
BolC5t29007H Brassica oleracea HOM05D003664 ORTHO05D003077 2.3e-08 63.5 228 32.9
DCAR_001141 Daucus carota HOM05D003664 ORTHO05D003077 2.3e-08 63.5 135 43.0
Sed0025516 Sechium edule HOM05D000531 ORTHO05D003077 2.3e-08 63.5 141 40.4
C05p02290 Brassica napus HOM05D003664 ORTHO05D003077 3.0e-08 63.2 225 33.3
BraA10t42515Z Brassica rapa HOM05D003664 ORTHO05D003077 3.0e-08 63.2 228 33.8
Manes.04G058300 Manihot esculenta HOM05D003664 ORTHO05D003077 3.0e-08 63.2 155 40.6
TAR628G1582 Trochodendron aralioides HOM05D000531 ORTHO05D003077 6.6e-08 62.0 210 35.2
Gohir.A03G210400 Gossypium hirsutum HOM05D000531 ORTHO05D003077 8.6e-08 61.6 216 33.3
Sopen01g047160 Solanum pennellii HOM05D003664 ORTHO05D003077 1.5e-07 60.8 216 30.6
BcaC02g09874 Brassica carinata HOM05D000531 ORTHO05D001630 1.9e-07 60.5 217 30.9
BolC4t25237H Brassica oleracea HOM05D000531 ORTHO05D001630 1.9e-07 60.5 217 30.9
Gorai.005G259700 Gossypium raimondii HOM05D000531 ORTHO05D003077 4.3e-07 59.3 215 32.1
C04p35670 Brassica napus HOM05D000531 ORTHO05D001630 5.6e-07 58.9 217 30.4
SalBow6G0585 Salvia bowleyana HOM05D003664 ORTHO05D003077 7.3e-07 58.5 116 44.0
SalBow6G1005 Salvia bowleyana HOM05D003664 ORTHO05D003077 7.3e-07 58.5 116 44.0
Gohir.D02G232000 Gossypium hirsutum HOM05D000531 ORTHO05D003077 9.5e-07 58.2 215 32.1
Solyc01g104650.3 Solanum lycopersicum HOM05D003664 ORTHO05D003077 9.5e-07 58.2 216 30.1
GSVIVG01029696001 Vitis vinifera HOM05D003664 ORTHO05D003077 9.5e-07 58.2 54 68.5
ATR0820G158 Amborella trichopoda HOM05D000531 ORTHO05D003077 1.2e-06 57.8 232 31.0
MSTRG.27834 Avicennia marina HOM05D003664 ORTHO05D003077 2.1e-06 57.0 204 32.8
Eucgr.G00615 Eucalyptus grandis HOM05D003664 ORTHO05D003077 4.7e-06 55.8 176 34.7


User provided reference genes

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