Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026932 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 3.4e-33 144.4 74 100.0
CSS0023921 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 9.9e-33 142.9 74 98.6
Duzib205G0906 Durio zibethinus HOM05D004624 ORTHO05D005357 6.6e-29 130.2 74 89.2
vmacro17426 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 8.7e-29 129.8 73 89.0
Rhsim13G0121200 Rhododendron simsii HOM05D004624 ORTHO05D005357 1.1e-28 129.4 74 87.8
Thecc.03G049000 Theobroma cacao HOM05D004624 ORTHO05D005357 1.1e-28 129.4 74 89.2
Gohir.D07G118600 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.9e-28 128.6 74 86.5
CSS0035187 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 2.5e-28 128.3 72 88.9
Gohir.A07G114500 Gossypium hirsutum HOM05D004624 ORTHO05D005357 2.5e-28 128.3 74 86.5
Gohir.D12G268300 Gossypium hirsutum HOM05D004624 ORTHO05D005357 2.5e-28 128.3 74 86.5
Gorai.008G288400 Gossypium raimondii HOM05D004624 ORTHO05D005357 5.6e-28 127.1 72 87.5
Rhsim04G0113600 Rhododendron simsii HOM05D004624 ORTHO05D005357 7.3e-28 126.7 71 91.5
Gorai.001G127500 Gossypium raimondii HOM05D004624 ORTHO05D005357 1.6e-27 125.6 74 85.1
Ciclev10010500m.g Citrus clementina HOM05D004624 ORTHO05D005357 2.1e-27 125.2 74 86.5
COL.COLO4_05868 Corchorus olitorius HOM05D004624 ORTHO05D005357 2.1e-27 125.2 70 90.0
vmacro08998 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 2.1e-27 125.2 74 86.5
Atru.chr12.1276 Acer truncatum HOM05D004624 ORTHO05D005357 1.1e-26 122.9 74 85.1
Hma1.2p1_0223F.1_g094210 Hydrangea macrophylla HOM05D004624 ORTHO05D005357 2.4e-26 121.7 72 86.1
TAR633G0121 Trochodendron aralioides HOM05D004624 ORTHO05D005357 9.0e-26 119.8 74 78.4
Glyma.01G100100 Glycine max HOM05D004624 ORTHO05D005357 2.0e-25 118.6 75 82.7
GSVIVG01025772001 Vitis vinifera HOM05D004624 ORTHO05D005357 4.4e-25 117.5 72 81.9
Cpa.g.sc116.84 Carica papaya HOM05D004624 ORTHO05D005357 7.6e-25 116.7 74 83.8
PGR142G2854 Punica granatum HOM05D004624 ORTHO05D005357 7.6e-25 116.7 74 85.1
COL.COLO4_37401 Corchorus olitorius HOM05D004624 ORTHO05D005357 1.3e-24 115.9 71 84.5
GSVIVG01021751001 Vitis vinifera HOM05D004624 ORTHO05D005357 2.2e-24 115.2 71 80.3
Lalb_Chr19g0128161 Lupinus albus HOM05D004624 ORTHO05D005357 4.9e-24 114.0 73 82.2
Glyma.03G068900 Glycine max HOM05D004624 ORTHO05D005357 6.4e-24 113.6 71 83.1
Dinv15634 Davidia involucrata HOM05D004624 ORTHO05D005357 1.1e-23 112.8 67 86.6
Sabra16G0036900 Salix brachista HOM05D004624 ORTHO05D005357 1.4e-23 112.5 72 77.8
Lj4g0019310 Lotus japonicus HOM05D004624 ORTHO05D005357 1.9e-23 112.1 73 79.5
Potri.016G034200 Populus trichocarpa HOM05D004624 ORTHO05D005357 1.9e-23 112.1 72 77.8
CiPaw.10G042300 Carya illinoinensis HOM05D004624 ORTHO05D005357 2.4e-23 111.7 71 78.9
Manes.15G024800 Manihot esculenta HOM05D004624 ORTHO05D005357 2.4e-23 111.7 75 78.7
TWI53G0657 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 2.4e-23 111.7 71 81.7
Aqoxy3G00212 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 4.2e-23 110.9 68 80.9
DCAR_020589 Daucus carota HOM05D004624 ORTHO05D005357 4.2e-23 110.9 62 90.3
ClCG11G007400 Citrullus lanatus HOM05D004624 ORTHO05D005357 5.4e-23 110.5 71 76.1
Haze_02997 Corylus avellana HOM05D004624 ORTHO05D005357 5.4e-23 110.5 74 79.7
CsaV3_2G010390 Cucumis sativus L. HOM05D004624 ORTHO05D005357 5.4e-23 110.5 62 85.5
Lj1g0004051 Lotus japonicus HOM05D004624 ORTHO05D005357 5.4e-23 110.5 71 78.9
Thecc.05G198400 Theobroma cacao HOM05D004624 ORTHO05D005357 5.4e-23 110.5 71 81.7
TWI74G0338 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 5.4e-23 110.5 71 80.3
MELO3C008583.2 Cucumis melo HOM05D004624 ORTHO05D005357 7.1e-23 110.2 71 76.1
Nitab4.5_0000021g0900 Nicotiana tabacum HOM05D004624 ORTHO05D005357 7.1e-23 110.2 75 76.0
QL07p012089 Quercus lobata HOM05D004624 ORTHO05D005357 9.3e-23 109.8 59 91.5
Cfa019982 Carpinus fangiana HOM05D004624 ORTHO05D005357 1.2e-22 109.4 76 76.3
Haze_20251 Corylus avellana HOM05D004624 ORTHO05D005357 1.2e-22 109.4 76 76.3
Eucgr.K01650 Eucalyptus grandis HOM05D004624 ORTHO05D005357 1.2e-22 109.4 67 83.6
PGSC0003DMG400026480 Solanum tuberosum HOM05D004624 ORTHO05D005357 1.2e-22 109.4 62 85.5
Nn7g37680 Nelumbo nucifera HOM05D004624 ORTHO05D005357 1.6e-22 109.0 72 77.8
Peaxi162Scf00516g00035 Petunia axillaris HOM05D004624 ORTHO05D005357 1.6e-22 109.0 63 82.5
Sabra06G0024000 Salix brachista HOM05D004624 ORTHO05D005357 1.6e-22 109.0 66 81.8
Cfa010947 Carpinus fangiana HOM05D004624 ORTHO05D005357 2.1e-22 108.6 75 77.3
Phvul.001G120800 Phaseolus vulgaris HOM05D004624 ORTHO05D005357 2.1e-22 108.6 69 81.2
Sc13g0000990 Simmondsia chinensis HOM05D004624 ORTHO05D005357 2.1e-22 108.6 75 74.7
Aqoxy3G02929 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 2.7e-22 108.2 66 80.3
Lalb_Chr19g0128151 Lupinus albus HOM05D004624 ORTHO05D005357 3.5e-22 107.8 73 78.1
Sopen03g028160 Solanum pennellii HOM05D004624 ORTHO05D005357 3.5e-22 107.8 64 82.8
arahy.Tifrunner.gnm1.ann1.QE2DSJ Arachis hypogaea HOM05D004624 ORTHO05D005357 4.6e-22 107.5 70 78.6
DCAR_028787 Daucus carota HOM05D004624 ORTHO05D005357 4.6e-22 107.5 61 86.9
HanXRQChr11g0352301 Helianthus annuus HOM05D004624 ORTHO05D005357 4.6e-22 107.5 69 76.8
Manes.10G062600 Manihot esculenta HOM05D004624 ORTHO05D005357 4.6e-22 107.5 71 77.5
Sed0025002 Sechium edule HOM05D004624 ORTHO05D005357 4.6e-22 107.5 63 81.0
AUR62018375 Chenopodium quinoa HOM05D004624 ORTHO05D005357 6.0e-22 107.1 66 80.3
ECA248G3900 Erigeron canadensis HOM05D004624 ORTHO05D005357 6.0e-22 107.1 63 84.1
Psat0s1206g0080 Pisum sativum HOM05D004624 ORTHO05D005357 6.0e-22 107.1 64 82.8
Potri.006G035900 Populus trichocarpa HOM05D004624 ORTHO05D005357 6.0e-22 107.1 66 81.8
Sabra16G0054100 Salix brachista HOM05D004624 ORTHO05D005357 6.0e-22 107.1 63 84.1
Nitab4.5_0000645g0040 Nicotiana tabacum HOM05D004624 ORTHO05D005357 7.8e-22 106.7 74 73.0
arahy.Tifrunner.gnm1.ann1.Q8D3CZ Arachis hypogaea HOM05D004624 ORTHO05D005357 1.3e-21 105.9 71 76.1
AUR62030290 Chenopodium quinoa HOM05D004624 ORTHO05D005357 1.3e-21 105.9 66 78.8
Ca_07684_v3 Cicer arietinum L. HOM05D004624 ORTHO05D005357 1.3e-21 105.9 62 82.3
Medtr4g124060 Medicago truncatula HOM05D004624 ORTHO05D005357 1.3e-21 105.9 71 76.1
Cpa.g.sc883.1 Carica papaya HOM05D004624 ORTHO05D005357 1.7e-21 105.5 62 85.5
Ah.13g077180 Amaranthus hybridus HOM05D004624 ORTHO05D005357 2.3e-21 105.1 73 72.6
Nitab4.5_0003447g0020 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.3e-21 105.1 62 82.3
Peaxi162Scf00815g00038 Petunia axillaris HOM05D004624 ORTHO05D005357 2.3e-21 105.1 74 68.9
CAN.G65.122 Capsicum annuum HOM05D004624 ORTHO05D005357 3.0e-21 104.8 74 71.6
MD03G1113900 Malus domestica HOM05D004624 ORTHO05D005357 3.0e-21 104.8 71 74.6
Sopen06g029060 Solanum pennellii HOM05D004624 ORTHO05D005357 3.0e-21 104.8 74 73.0
Medtr2g008230 Medicago truncatula HOM05D004624 ORTHO05D005357 3.9e-21 104.4 71 76.1
Cc03_g11260 Coffea canephora HOM05D004624 ORTHO05D005357 5.1e-21 104.0 71 74.6
TAR627G0533 Trochodendron aralioides HOM05D004624 ORTHO05D005357 5.1e-21 104.0 71 73.2
Nitab4.5_0002193g0050 Nicotiana tabacum HOM05D004624 ORTHO05D005357 6.6e-21 103.6 74 73.0
TPR.G12609 Trifolium pratense HOM05D004624 ORTHO05D005357 6.6e-21 103.6 68 76.5
Nitab4.5_0006185g0060 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.5e-20 102.4 61 80.3
THA.LOC109116606 Tarenaya hassleriana HOM05D004624 ORTHO05D005357 1.5e-20 102.4 63 82.5
CANSAT78G0048 Cannabis sativa HOM05D004624 ORTHO05D005357 1.9e-20 102.1 63 81.0
CANSAT78G2147 Cannabis sativa HOM05D004624 ORTHO05D005357 1.9e-20 102.1 63 81.0
CARHR260420 Cardamine hirsuta HOM05D004624 ORTHO05D005357 1.9e-20 102.1 69 78.3
Nitab4.5_0006270g0030 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.9e-20 102.1 74 73.0
AL6G43100 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 2.5e-20 101.7 69 78.3
AT4G09550 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 2.5e-20 101.7 69 78.3
CAN.G732.25 Capsicum annuum HOM05D004624 ORTHO05D005357 2.5e-20 101.7 64 78.1
ECA238G3634 Erigeron canadensis HOM05D000185 ORTHO05D000105 2.5e-20 101.7 73 72.6
TPR.G16719 Trifolium pratense HOM05D004624 ORTHO05D005357 2.5e-20 101.7 68 75.0
Actinidia05484 Actinidia chinensis HOM05D004624 ORTHO05D005357 3.3e-20 101.3 59 88.1
BcaB03g15728 Brassica carinata HOM05D004624 ORTHO05D005357 3.3e-20 101.3 58 87.9
C06p33840 Brassica napus HOM05D004624 ORTHO05D005357 3.3e-20 101.3 58 87.9
BraA07t30607Z Brassica rapa HOM05D004624 ORTHO05D005357 4.3e-20 100.9 58 87.9
Migut.J01633 Erythranthe guttata HOM05D004624 ORTHO05D005357 4.3e-20 100.9 70 70.0
RcHm_v2.0_Chr7g0222161 Rosa chinensis HOM05D004624 ORTHO05D005357 5.6e-20 100.5 68 75.0
Sp6g08080 Schrenkiella parvula HOM05D004624 ORTHO05D005357 7.3e-20 100.1 69 76.8
BcaB03g15084 Brassica carinata HOM05D004624 ORTHO05D005357 9.6e-20 99.8 72 73.6
Thhalv10019414m.g Eutrema salsugineum HOM05D004624 ORTHO05D005357 9.6e-20 99.8 58 86.2
BcaC08g45622 Brassica carinata HOM05D004624 ORTHO05D005357 1.6e-19 99.0 58 86.2
FvH4_5g29300 Fragaria vesca HOM05D004624 ORTHO05D005357 2.1e-19 98.6 68 73.5
FAN13G0550 Fragaria x ananassa HOM05D004624 ORTHO05D005357 2.1e-19 98.6 68 73.5
FAN18G4513 Fragaria x ananassa HOM05D004624 ORTHO05D005357 2.1e-19 98.6 68 73.5
Prupe.8G075600 Prunus persica HOM05D004624 ORTHO05D005357 2.1e-19 98.6 78 71.8
Carub.0006s2800 Capsella rubella HOM05D004624 ORTHO05D005357 3.6e-19 97.8 69 75.4
PSO675G0528 Papaver somniferum HOM05D004624 ORTHO05D005357 3.6e-19 97.8 67 70.1
Sp5g28970 Schrenkiella parvula HOM05D004624 ORTHO05D005357 4.8e-19 97.4 58 82.8
BcaC08g46798 Brassica carinata HOM05D004624 ORTHO05D005357 6.2e-19 97.1 62 79.0
C06p47930 Brassica napus HOM05D004624 ORTHO05D005357 6.2e-19 97.1 62 79.0
BolC6t39828H Brassica oleracea HOM05D004624 ORTHO05D005357 6.2e-19 97.1 62 79.0
BraA07t31513Z Brassica rapa HOM05D004624 ORTHO05D005357 6.2e-19 97.1 58 82.8
SHI11762 Sapria himalayana HOM05D004624 ORTHO05D005357 6.2e-19 97.1 69 71.0
Migut.J01335 Erythranthe guttata HOM05D004624 ORTHO05D005357 8.1e-19 96.7 60 75.0
PSO063G3723 Papaver somniferum HOM05D004624 ORTHO05D005357 8.1e-19 96.7 69 69.6
QL04p073121 Quercus lobata HOM05D004624 ORTHO05D005357 8.1e-19 96.7 54 88.9
CDE05G2943 Ceratophyllum demersum HOM05D004624 ORTHO05D005357 1.1e-18 96.3 61 75.4
RcHm_v2.0_Chr1g0330241 Rosa chinensis HOM05D004624 ORTHO05D005357 1.1e-18 96.3 68 72.1
AL2G33600 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 1.4e-18 95.9 63 74.6
AT1G73790 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 1.4e-18 95.9 63 74.6
Carub.0002s2054 Capsella rubella HOM05D004624 ORTHO05D005357 1.4e-18 95.9 63 76.2
FAN08G1983 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.8e-18 95.5 68 72.1
MBI17_g08328_MAGBIO Magnolia biondii HOM05D004624 ORTHO05D005357 1.8e-18 95.5 55 83.6
CARHR066880 Cardamine hirsuta HOM05D004624 ORTHO05D005357 2.4e-18 95.1 65 73.8
Migut.J01336 Erythranthe guttata HOM05D004624 ORTHO05D005357 2.4e-18 95.1 58 75.9
Aa31LG4G10460 Aethionema arabicum HOM05D004624 ORTHO05D005357 3.1e-18 94.7 67 71.6
PSO541G4755 Papaver somniferum HOM05D004624 ORTHO05D005357 5.3e-18 94.0 67 68.7
Atru.chr12.1164 Acer truncatum HOM05D004624 ORTHO05D005357 9.9e-17 89.7 56 80.4
unitig_746.g26892 Utricularia gibba HOM05D004624 ORTHO05D005357 6.4e-16 87.0 57 71.9
EL10Ac4g09929 Beta vulgaris HOM05D004624 ORTHO05D005357 4.2e-15 84.3 54 75.9
Pp3c13_4560 Physcomitrium patens HOM05D004624 ORTHO05D005357 7.1e-15 83.6 60 71.7
Os03g0435900 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 2.7e-14 81.6 69 62.3
Os11g0368172 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 2.7e-14 81.6 69 62.3
Os03g0824000 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 4.6e-14 80.9 71 59.2
Zm00001eb062930 Zea mays HOM05D004624 ORTHO05D005357 1.0e-13 79.7 67 64.2
FvH4_2g13790 Fragaria vesca HOM05D004624 ORTHO05D005357 3.0e-13 78.2 56 71.4
FAN24G0569 Fragaria x ananassa HOM05D004624 ORTHO05D005357 3.0e-13 78.2 56 71.4
AagrBONN_evm.TU.Sc2ySwM_340.447 Anthoceros agrestis HOM05D004624 ORTHO05D005357 5.1e-13 77.4 58 62.1
Pp3c12_8260 Physcomitrium patens HOM05D004624 ORTHO05D005357 5.1e-13 77.4 58 67.2
PRCOL_00005147 Prasinoderma coloniale HOM05D004624 ORTHO05D005357 5.1e-13 77.4 58 63.8
Solyc03g097400.1 Solanum lycopersicum HOM05D004624 ORTHO05D005357 8.7e-13 76.6 44 84.1
MD11G1133700 Malus domestica HOM05D004624 ORTHO05D005357 1.9e-12 75.5 50 78.0
SMO172G0211 Selaginella moellendorffii HOM05D004624 ORTHO05D005357 4.3e-12 74.3 50 70.0
CBR_g23420 Chara braunii HOM05D004624 ORTHO05D005357 7.4e-12 73.6 58 58.6
Solyc06g072690.3 Solanum lycopersicum HOM05D004624 ORTHO05D005357 9.6e-12 73.2 56 67.9
SalBow6G5026 Salvia bowleyana HOM05D004624 ORTHO05D005357 1.6e-11 72.4 51 72.5
HPP92_018529 Vanilla planifolia HOM05D004624 ORTHO05D005357 2.1e-11 72.0 70 48.6
MCO02G029 Micromonas commoda HOM05D004624 ORTHO05D005357 1.1e-10 69.7 58 56.9
Mapoly0109s0047 Marchantia polymorpha HOM05D004624 ORTHO05D005357 1.8e-10 68.9 58 56.9
Lsat_1_v5_gn_1_43120 Lactuca sativa HOM05D004624 ORTHO05D005357 5.3e-10 67.4 34 94.1
Cre14.g610000 Chlamydomonas reinhardtii HOM05D004624 ORTHO05D005357 4.2e-07 57.8 57 47.4
Glyma.03G125300 Glycine max HOM05D004624 ORTHO05D005357 1.2e-06 56.2 35 80.0
Gohir.A12G267900 Gossypium hirsutum HOM05D004624 ORTHO05D005357 7.9e-06 53.5 26 96.2


User provided reference genes

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