Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.4e-142 508.8 258 100.0
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.5e-131 472.2 258 94.2
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.5e-131 472.2 258 94.2
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 7.3e-91 337.8 244 70.9
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 6.2e-90 334.7 243 72.0
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 3.4e-88 328.9 244 73.4
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 4.1e-86 322.0 243 71.6
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 1.2e-85 320.5 246 66.7
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 1.7e-84 316.6 245 68.2
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 6.8e-81 304.7 256 62.9
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 2.2e-79 299.7 248 65.7
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 4.9e-79 298.5 257 61.1
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 6.4e-79 298.1 211 78.7
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 2.4e-78 296.2 245 66.5
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 3.2e-78 295.8 243 65.0
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 5.4e-78 295.0 241 63.5
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 9.3e-78 294.3 213 73.2
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 9.3e-78 294.3 241 63.5
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 9.3e-78 294.3 241 63.5
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.6e-77 293.5 213 72.8
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 1.3e-76 290.4 242 61.6
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 8.7e-76 287.7 244 62.3
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.9e-75 286.6 244 62.3
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 5.6e-75 285.0 238 63.0
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 1.6e-74 283.5 243 61.7
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 2.1e-74 283.1 245 61.6
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.8e-74 282.7 244 61.5
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.8e-74 282.7 238 62.2
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 2.8e-74 282.7 240 61.2
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 1.8e-73 280.0 247 60.3
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 3.1e-73 279.3 243 59.3
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 9.0e-73 277.7 239 62.3
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 2.0e-72 276.6 238 63.9
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 7.6e-72 274.6 245 61.6
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 9.9e-72 274.2 252 58.3
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 9.9e-72 274.2 252 58.3
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 1.3e-71 273.9 243 58.8
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 2.9e-71 272.7 241 59.3
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.4e-70 270.4 247 59.1
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 2.4e-70 269.6 251 58.2
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 2.4e-70 269.6 247 59.1
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 5.4e-70 268.5 245 60.4
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 5.4e-70 268.5 243 59.3
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 9.3e-70 267.7 240 60.0
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 2.3e-68 263.1 200 71.0
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 2.3e-68 263.1 244 57.4
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 3.0e-68 262.7 251 56.2
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 6.6e-68 261.5 248 56.0
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 4.3e-67 258.8 244 56.6
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 4.3e-67 258.8 244 56.1
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 9.6e-67 257.7 247 57.5
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 1.3e-66 257.3 244 56.1
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 2.1e-66 256.5 249 57.0
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 2.8e-66 256.1 245 59.2
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 2.4e-65 253.1 241 57.7
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 3.1e-65 252.7 241 57.3
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 3.1e-65 252.7 244 57.0
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 5.3e-65 251.9 248 56.5
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 5.3e-65 251.9 241 57.3
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 9.9e-64 247.7 236 57.2
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 2.2e-63 246.5 248 55.6
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 2.4e-62 243.0 250 52.0
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 4.6e-61 238.8 249 53.4
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 1.3e-60 237.3 242 56.6
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 2.3e-60 236.5 241 54.8
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 6.7e-60 235.0 247 51.8
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 1.5e-59 233.8 243 53.5
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 2.5e-59 233.0 241 55.6
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 5.6e-59 231.9 243 51.4
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 5.6e-59 231.9 247 51.0
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 9.6e-59 231.1 247 50.6
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 2.1e-58 229.9 243 49.8
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 2.4e-57 226.5 235 51.9
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 2.4e-57 226.5 236 52.1
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 1.5e-56 223.8 243 52.3
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 2.0e-56 223.4 242 51.7
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 2.6e-56 223.0 243 49.8
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 2.6e-56 223.0 259 50.6
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 4.5e-56 222.2 235 53.2
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 7.6e-56 221.5 244 52.5
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 8.4e-55 218.0 241 51.0
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 4.6e-53 212.2 240 53.8
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 1.8e-52 210.3 241 53.5
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 2.3e-52 209.9 241 52.3
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 5.1e-52 208.8 242 47.5
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 8.7e-52 208.0 242 50.4
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 2.5e-51 206.5 237 48.1
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 3.3e-51 206.1 241 52.3
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 4.3e-51 205.7 237 49.8
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 7.4e-51 204.9 155 64.5
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 2.8e-50 203.0 237 48.9
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 2.8e-50 203.0 245 50.6
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 2.8e-50 203.0 245 50.6
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 3.1e-49 199.5 239 50.2
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 5.3e-49 198.7 240 47.9
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 6.9e-49 198.4 252 47.2
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 9.0e-49 198.0 241 51.5
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 3.4e-48 196.1 248 48.8
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 5.9e-48 195.3 254 44.9
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 7.6e-48 194.9 264 44.3
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.7e-47 193.7 186 55.4
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 2.9e-47 193.0 158 59.5
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 3.8e-47 192.6 237 49.4
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 3.8e-47 192.6 241 49.4
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 1.1e-46 191.0 240 48.3
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 1.1e-46 191.0 237 47.3
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 4.2e-46 189.1 235 44.7
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 4.2e-46 189.1 186 54.8
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 2.1e-45 186.8 239 48.5
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 7.9e-45 184.9 239 49.0
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 7.9e-45 184.9 245 46.1
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 1.8e-44 183.7 243 45.7
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 1.8e-44 183.7 251 44.6
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.0e-44 183.0 237 46.4
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 3.9e-44 182.6 242 47.9
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 5.1e-44 182.2 238 47.1
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 5.1e-44 182.2 243 46.1
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 1.1e-43 181.0 244 46.3
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 4.3e-43 179.1 246 44.7
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 2.8e-42 176.4 240 43.8
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 3.7e-42 176.0 251 43.0
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 6.3e-42 175.3 151 60.9
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 1.1e-41 174.5 252 43.3
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 1.5e-40 170.6 251 43.4
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 1.5e-40 170.6 251 43.4
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 1.5e-40 170.6 159 54.1
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 2.6e-40 169.9 238 43.7
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 7.7e-40 168.3 159 53.5
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 7.7e-40 168.3 159 53.5
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 2.9e-39 166.4 241 42.3
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 1.9e-38 163.7 246 41.1
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 2.5e-38 163.3 159 52.2
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 1.0e-36 157.9 158 55.1
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 2.3e-36 156.8 251 40.6
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 8.8e-36 154.8 238 41.6
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 7.4e-35 151.8 97 74.2
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 7.4e-35 151.8 245 41.2
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 3.7e-34 149.4 110 63.6
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 6.3e-34 148.7 255 38.4
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 4.1e-33 146.0 98 71.4
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 9.1e-33 144.8 155 52.3
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 2.6e-32 143.3 257 39.7
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 3.4e-32 142.9 86 83.7
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 4.5e-32 142.5 139 49.6
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 1.1e-30 137.9 131 52.7
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 7.9e-29 131.7 126 54.8
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 9.1e-25 118.2 111 51.4
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 2.1e-21 107.1 111 46.8
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 2.7e-21 106.7 96 53.1
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 2.3e-20 103.6 255 32.9
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.9e-14 84.0 69 59.4
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 3.2e-14 83.2 143 37.1
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 7.2e-14 82.0 63 65.1
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 4.4e-11 72.8 70 47.1
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 5.7e-11 72.4 181 28.7
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 8.3e-10 68.6 191 26.7
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 8.3e-10 68.6 81 40.7
SEGI_07745 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 5.5e-06 55.8 273 26.0


User provided reference genes

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