Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 5.3e-60 234.2 121 100.0
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 4.6e-27 124.8 93 75.3
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.0e-26 123.6 90 74.4
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 2.3e-26 122.5 92 73.9
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 5.0e-26 121.3 91 73.6
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 3.3e-25 118.6 92 70.7
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 9.5e-25 117.1 91 68.1
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 2.3e-23 112.5 77 68.8
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 3.1e-23 112.1 93 64.5
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 4.0e-23 111.7 104 59.6
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 1.2e-22 110.2 97 61.9
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 2.0e-22 109.4 78 65.4
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 7.5e-22 107.5 105 62.9
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 9.8e-22 107.1 87 65.5
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 1.7e-21 106.3 96 65.6
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 4.9e-21 104.8 94 60.6
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 8.3e-21 104.0 92 63.0
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 3.2e-20 102.1 86 60.5
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 3.2e-20 102.1 93 59.1
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 5.4e-20 101.3 77 64.9
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 9.2e-20 100.5 84 64.3
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.2e-19 100.1 91 59.3
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 1.2e-19 100.1 88 62.5
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 1.2e-19 100.1 92 63.0
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 1.2e-19 100.1 91 59.3
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.6e-19 99.8 91 59.3
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 2.7e-19 99.0 91 58.2
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 3.5e-19 98.6 116 53.4
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 4.6e-19 98.2 104 56.7
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 4.6e-19 98.2 101 55.4
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 4.6e-19 98.2 92 59.8
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 6.0e-19 97.8 90 60.0
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 1.0e-18 97.1 102 55.9
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.3e-18 96.7 73 64.4
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 1.7e-18 96.3 92 59.8
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 1.7e-18 96.3 93 58.1
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 3.0e-18 95.5 87 58.6
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 3.0e-18 95.5 98 54.1
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 3.9e-18 95.1 79 65.8
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 6.6e-18 94.4 94 55.3
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 2.5e-17 92.4 71 63.4
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 5.6e-17 91.3 90 58.9
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 5.6e-17 91.3 79 59.5
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 7.3e-17 90.9 80 56.2
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 7.3e-17 90.9 99 54.5
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 7.3e-17 90.9 93 53.8
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 9.5e-17 90.5 89 51.7
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 1.6e-16 89.7 89 57.3
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 3.6e-16 88.6 83 56.6
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 3.6e-16 88.6 91 50.5
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 3.6e-16 88.6 93 55.9
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 4.7e-16 88.2 98 57.1
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 6.2e-16 87.8 50 80.0
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 6.2e-16 87.8 78 57.7
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 8.1e-16 87.4 88 51.1
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 1.1e-15 87.0 92 52.2
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 1.1e-15 87.0 78 55.1
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 1.4e-15 86.7 66 62.1
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.8e-15 86.3 74 55.4
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 2.3e-15 85.9 93 55.9
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 4.0e-15 85.1 83 56.6
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 4.0e-15 85.1 81 58.0
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 5.2e-15 84.7 69 58.0
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 6.8e-15 84.3 99 48.5
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 6.8e-15 84.3 86 55.8
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 6.8e-15 84.3 86 55.8
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 6.8e-15 84.3 77 57.1
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 1.2e-14 83.6 121 46.3
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 1.2e-14 83.6 103 50.5
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 2.0e-14 82.8 68 63.2
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 2.6e-14 82.4 96 53.1
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 4.4e-14 81.6 103 50.5
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 5.8e-14 81.3 92 54.3
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 7.5e-14 80.9 83 55.4
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 9.8e-14 80.5 73 61.6
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 9.8e-14 80.5 88 48.9
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 1.3e-13 80.1 86 53.5
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 1.3e-13 80.1 92 51.1
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 1.3e-13 80.1 100 53.0
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 1.7e-13 79.7 100 53.0
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 2.2e-13 79.3 96 44.8
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 2.2e-13 79.3 96 44.8
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 2.2e-13 79.3 64 68.8
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 2.9e-13 79.0 89 53.9
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 2.9e-13 79.0 108 48.1
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 4.9e-13 78.2 87 54.0
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 6.4e-13 77.8 80 52.5
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 8.3e-13 77.4 78 56.4
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 8.3e-13 77.4 85 48.2
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 8.3e-13 77.4 64 67.2
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 8.3e-13 77.4 77 54.5
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 8.3e-13 77.4 65 61.5
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 1.1e-12 77.0 92 51.1
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 1.1e-12 77.0 92 51.1
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 1.1e-12 77.0 84 50.0
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 1.4e-12 76.6 86 46.5
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.4e-12 75.9 97 50.5
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 3.2e-12 75.5 65 58.5
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 3.2e-12 75.5 90 51.1
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 3.2e-12 75.5 100 49.0
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 3.2e-12 75.5 71 49.3
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 3.2e-12 75.5 84 51.2
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 3.2e-12 75.5 84 51.2
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 4.1e-12 75.1 55 69.1
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 4.1e-12 75.1 103 48.5
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 4.1e-12 75.1 56 71.4
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 5.4e-12 74.7 86 47.7
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 5.4e-12 74.7 86 47.7
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 5.4e-12 74.7 100 48.0
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 7.1e-12 74.3 88 47.7
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 7.1e-12 74.3 84 51.2
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 9.2e-12 73.9 79 49.4
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 9.2e-12 73.9 97 51.5
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 1.2e-11 73.6 84 46.4
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 1.2e-11 73.6 81 58.0
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 2.1e-11 72.8 101 49.5
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 2.1e-11 72.8 80 52.5
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.7e-11 72.4 100 48.0
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 2.7e-11 72.4 68 54.4
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 3.5e-11 72.0 54 66.7
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 4.6e-11 71.6 86 47.7
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 6.0e-11 71.2 86 51.2
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 6.0e-11 71.2 96 40.6
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 1.3e-10 70.1 77 54.5
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 1.7e-10 69.7 78 48.7
Eucgr.D00467 Eucalyptus grandis HOM05D005007 ORTHO05D006053 1.7e-10 69.7 84 45.2
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 3.0e-10 68.9 88 51.1
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 3.0e-10 68.9 64 54.7
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 3.9e-10 68.6 80 50.0
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 5.1e-10 68.2 91 45.1
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 8.6e-10 67.4 45 68.9
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 1.9e-09 66.2 85 41.2
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 2.5e-09 65.9 76 47.4
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 3.3e-09 65.5 100 45.0
Nn6g34499 Nelumbo nucifera HOM05D005007 ORTHO05D006053 4.3e-09 65.1 98 45.9
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 7.3e-09 64.3 45 71.1
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 7.3e-09 64.3 95 44.2
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 9.5e-09 63.9 89 49.4
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 2.1e-08 62.8 94 47.9
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 4.7e-08 61.6 62 46.8
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.1e-07 60.5 93 48.4
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 2.3e-07 59.3 55 58.2
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 2.3e-07 59.3 92 43.5
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 3.1e-07 58.9 95 46.3
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 5.8e-06 54.7 74 45.9
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 9.9e-06 53.9 74 45.9


User provided reference genes

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