Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026873 Camellia sinensis var. sinensis HOM05D004228 ORTHO05D005137 0.0e+00 1575.1 787 100.0
Actinidia25487 Actinidia chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1364.0 782 86.1
Dinv21435 Davidia involucrata HOM05D004228 ORTHO05D005137 0.0e+00 1352.4 782 85.7
Rhsim08G0202500 Rhododendron simsii HOM05D004228 ORTHO05D005137 0.0e+00 1348.6 824 81.1
RcHm_v2.0_Chr2g0132121 Rosa chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1313.9 778 82.1
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 0.0e+00 1309.3 777 81.9
FvH4_6g28160 Fragaria vesca HOM05D004228 ORTHO05D005137 0.0e+00 1303.9 778 81.7
Prupe.3G104700 Prunus persica HOM05D004228 ORTHO05D005137 0.0e+00 1302.7 780 81.0
FAN14G1073 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1283.5 815 77.9
GSVIVG01016092001 Vitis vinifera HOM05D004228 ORTHO05D005137 0.0e+00 1282.7 777 81.0
Potri.003G185600 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1274.6 769 80.8
FAN09G0969 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1271.9 819 77.3
Potri.003G185776 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1270.8 769 80.5
Potri.003G185951 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1270.0 769 80.4
Thecc.06G048200 Theobroma cacao HOM05D004228 ORTHO05D005137 0.0e+00 1269.2 774 79.5
CiPaw.02G164000 Carya illinoinensis HOM05D004228 ORTHO05D005137 0.0e+00 1266.5 778 79.3
Cc08_g05800 Coffea canephora HOM05D004228 ORTHO05D005137 0.0e+00 1263.8 782 79.7
Duzib160G0712 Durio zibethinus HOM05D004228 ORTHO05D005137 0.0e+00 1258.4 774 78.8
Ciclev10024933m.g Citrus clementina HOM05D004228 ORTHO05D005137 0.0e+00 1252.7 777 78.8
CANSAT64G2586 Cannabis sativa HOM05D004228 ORTHO05D005137 0.0e+00 1249.2 781 77.8
MSTRG.13911 Avicennia marina HOM05D004228 ORTHO05D005137 0.0e+00 1245.0 776 77.7
Solyc08g075390.4 Solanum lycopersicum HOM05D004228 ORTHO05D005137 0.0e+00 1244.6 780 78.3
CAN.G930.1 Capsicum annuum HOM05D004228 ORTHO05D005137 0.0e+00 1241.9 777 77.7
Sopen08g024020 Solanum pennellii HOM05D004228 ORTHO05D005137 0.0e+00 1235.3 780 77.8
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1232.2 771 77.6
Aqoxy7G02340 Aquilegia oxysepala HOM05D004228 ORTHO05D005137 0.0e+00 1229.9 777 76.6
Sabra03G0135800 Salix brachista HOM05D004228 ORTHO05D005137 0.0e+00 1226.5 779 77.0
Sed0017026 Sechium edule HOM05D004228 ORTHO05D005137 0.0e+00 1226.1 777 77.3
Nn8g40122 Nelumbo nucifera HOM05D004228 ORTHO05D005137 0.0e+00 1225.3 756 77.6
Gohir.A10G000600 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1222.6 782 76.7
Gorai.011G001100 Gossypium raimondii HOM05D004228 ORTHO05D005137 0.0e+00 1222.2 783 76.8
TWI12G1267 Tripterygium wilfordii HOM05D004228 ORTHO05D005137 0.0e+00 1221.8 777 76.8
Gohir.D10G000700 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1220.3 782 76.5
Ca_13679_v3 Cicer arietinum L. HOM05D004228 ORTHO05D005137 0.0e+00 1217.6 772 76.2
Atru.chr1.2817 Acer truncatum HOM05D004228 ORTHO05D005137 0.0e+00 1213.4 755 78.7
Glyma.13G072500 Glycine max HOM05D004228 ORTHO05D005137 0.0e+00 1211.4 771 76.5
DCAR_030908 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1209.5 775 75.7
THA.LOC104813593 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 0.0e+00 1204.9 777 74.9
Lalb_Chr18g0048351 Lupinus albus HOM05D004228 ORTHO05D005137 0.0e+00 1203.3 775 75.7
Lj6g0018144 Lotus japonicus HOM05D004228 ORTHO05D005137 0.0e+00 1202.2 781 75.8
Phvul.006G018900 Phaseolus vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1202.2 770 75.5
arahy.Tifrunner.gnm1.ann1.1BZV33 Arachis hypogaea HOM05D004228 ORTHO05D005137 0.0e+00 1201.4 760 77.4
Migut.E01375 Erythranthe guttata HOM05D004228 ORTHO05D005137 0.0e+00 1200.7 779 75.0
CsaV3_7G031770 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1199.9 763 77.7
Psat4g022640 Pisum sativum HOM05D004228 ORTHO05D005137 0.0e+00 1198.7 772 75.3
HanXRQChr13g0411161 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1198.3 774 76.2
Haze_16698 Corylus avellana HOM05D004228 ORTHO05D005137 0.0e+00 1196.4 881 69.4
Actinidia18265 Actinidia chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1194.9 687 85.0
MELO3C023479.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1194.9 765 77.5
MELO3C023478.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1192.2 782 75.1
HanXRQChr17g0558091 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1190.3 770 75.7
Lsat_1_v5_gn_3_53241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1189.9 780 75.4
EL10Ac8g19421 Beta vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1187.2 777 75.5
Sp5g34750 Schrenkiella parvula HOM05D004228 ORTHO05D005137 0.0e+00 1186.0 772 74.1
CsaV3_7G031780 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1185.6 782 75.2
PSO170G5168 Papaver somniferum HOM05D004228 ORTHO05D005137 0.0e+00 1184.9 775 75.2
BraA07t30343Z Brassica rapa HOM05D004228 ORTHO05D005137 0.0e+00 1181.8 774 73.9
BcaNung04171 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1181.4 772 73.6
VMungo0540G0565 Vigna mungo HOM05D004228 ORTHO05D005137 0.0e+00 1181.4 770 74.5
Lsat_1_v5_gn_6_17241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1180.6 775 74.8
A07p26990 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1178.7 774 73.8
Ah.09g231750 Amaranthus hybridus HOM05D004228 ORTHO05D005137 0.0e+00 1178.3 772 75.8
C06p29710 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1176.0 774 73.6
BolC6t38132H Brassica oleracea HOM05D004228 ORTHO05D005137 0.0e+00 1175.6 774 73.4
vmacro19079 Vaccinium macrocarpon HOM05D004228 ORTHO05D005137 0.0e+00 1175.6 762 78.2
Thhalv10018131m.g Eutrema salsugineum HOM05D004228 ORTHO05D005137 0.0e+00 1172.9 779 72.5
CARHR073460 Cardamine hirsuta HOM05D004228 ORTHO05D005137 0.0e+00 1172.5 772 72.5
ClCG09G003440 Citrullus lanatus HOM05D004228 ORTHO05D005137 0.0e+00 1171.0 771 75.4
DCAR_002193 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1170.2 781 73.8
AT1G79690 Arabidopsis thaliana HOM05D004228 ORTHO05D005137 0.0e+00 1167.5 772 73.4
BcaB02g07234 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1166.4 772 73.1
AL2G40390 Arabidopsis lyrata HOM05D004228 ORTHO05D005137 0.0e+00 1166.0 779 73.0
Carub.0002s2655 Capsella rubella HOM05D004228 ORTHO05D005137 0.0e+00 1156.7 772 72.8
BcaB02g08706 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1152.9 772 72.2
AUR62002649 Chenopodium quinoa HOM05D004228 ORTHO05D005137 0.0e+00 1152.9 794 72.5
ATR0789G048 Amborella trichopoda HOM05D004228 ORTHO05D005137 0.0e+00 1148.3 782 72.3
Aa31LG4G1300 Aethionema arabicum HOM05D004228 ORTHO05D005137 0.0e+00 1145.6 775 72.0
BcaC08g47528 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1143.3 772 71.9
ECA240G4106 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1141.3 768 73.8
HPP92_017167 Vanilla planifolia HOM05D004228 ORTHO05D005137 0.0e+00 1138.6 774 71.1
ECA240G2553 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1131.3 751 73.5
Os02g0793300 Oryza sativa ssp. japonica HOM05D004228 ORTHO05D005137 0.0e+00 1127.9 771 71.2
C06p53520 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1125.9 782 70.6
Zm00001eb192570 Zea mays HOM05D004228 ORTHO05D005137 0.0e+00 1112.4 770 70.5
BraA07t31978Z Brassica rapa HOM05D004228 ORTHO05D005137 0.0e+00 1100.5 780 69.5
BolC6t40368H Brassica oleracea HOM05D004228 ORTHO05D005137 0.0e+00 1099.3 782 69.4
MELO3C023481.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1094.0 770 70.3
Peaxi162Scf00193g00726 Petunia axillaris HOM05D004228 ORTHO05D005137 0.0e+00 1092.8 735 74.8
FAN02G0630 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1089.3 691 77.9
A07p44700 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1088.6 785 68.8
SGA_v2.0_scaffold121G33058 Striga asiatica HOM05D004228 ORTHO05D005137 0.0e+00 1080.5 708 75.0
Medtr3g437740 Medicago truncatula HOM05D004228 ORTHO05D005137 0.0e+00 1075.8 698 74.8
THA.LOC104808168 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 4.5e-309 1064.3 776 68.0
MD17G1227300 Malus domestica HOM05D004228 ORTHO05D005137 9.4e-307 1056.6 780 69.2
Eucgr.J03134 Eucalyptus grandis HOM05D004228 ORTHO05D005137 7.4e-304 1047.0 663 76.6
unitig_37.g12907 Utricularia gibba HOM05D004228 ORTHO05D005137 2.9e-300 1035.0 778 66.3
VMungo1080G1878 Vigna mungo HOM05D004228 ORTHO05D005137 2.1e-298 1028.9 742 69.1
ATR0580G052 Amborella trichopoda HOM05D004228 ORTHO05D005137 1.5e-291 1006.1 746 66.8
arahy.Tifrunner.gnm1.ann1.GHRN5T Arachis hypogaea HOM05D004228 ORTHO05D005137 8.3e-287 990.3 752 67.2
SMO337G0028 Selaginella moellendorffii HOM05D004228 ORTHO05D005137 2.1e-282 975.7 770 61.9
Nitab4.5_0000030g0500 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.4e-278 963.0 660 72.7
Nitab4.5_0002244g0120 Nicotiana tabacum HOM05D004228 ORTHO05D005137 5.4e-278 961.1 632 75.6
Pp3c5_190 Physcomitrium patens HOM05D004228 ORTHO05D005137 7.0e-278 960.7 776 61.6
arahy.Tifrunner.gnm1.ann1.XEX8KQ Arachis hypogaea HOM05D004228 ORTHO05D005137 3.3e-275 951.8 752 65.4
Mapoly0059s0059 Marchantia polymorpha HOM05D004228 ORTHO05D005137 1.4e-273 946.4 763 62.1
Lsat_1_v5_gn_0_21260 Lactuca sativa HOM05D004228 ORTHO05D005137 1.2e-250 870.2 663 65.8
Manes.11G069700 Manihot esculenta HOM05D004228 ORTHO05D005137 2.1e-250 869.4 532 79.5
Lsat_1_v5_gn_0_21180 Lactuca sativa HOM05D004228 ORTHO05D005137 6.8e-249 864.4 646 66.3
AagrBONN_evm.TU.Sc2ySwM_117.2286 Anthoceros agrestis HOM05D004228 ORTHO05D005137 1.2e-248 863.6 702 60.5
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 4.4e-248 861.7 561 73.3
Hma1.2p1_0338F.1_g129690 Hydrangea macrophylla HOM05D004228 ORTHO05D005137 3.8e-247 858.6 515 81.0
AUR62034058 Chenopodium quinoa HOM05D004228 ORTHO05D005137 9.0e-225 784.3 761 55.7
Oeu057157.1 Olea europaea HOM05D004228 ORTHO05D005137 8.2e-202 708.0 443 77.7
arahy.Tifrunner.gnm1.ann1.W5V7W0 Arachis hypogaea HOM05D004228 ORTHO05D005137 3.1e-193 679.5 448 74.3
PSO017G5477 Papaver somniferum HOM05D004228 ORTHO05D005137 4.1e-153 546.2 374 73.5
PSO017G2203 Papaver somniferum HOM05D004228 ORTHO05D005137 5.6e-150 535.8 349 73.9
MBI14_g16439_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 1.8e-148 530.8 608 49.3
COL.COLO4_26790 Corchorus olitorius HOM05D004228 ORTHO05D005137 1.4e-124 451.4 272 80.9
SEGI_32687 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 7.1e-121 439.1 346 59.8
Cpa.g.sc167.19 Carica papaya HOM05D004228 ORTHO05D005137 7.4e-102 375.9 249 71.9
Lsat_1_v5_gn_3_49001 Lactuca sativa HOM05D004228 ORTHO05D005137 6.0e-96 356.3 250 69.6
COL.COLO4_26791 Corchorus olitorius HOM05D004228 ORTHO05D005137 1.9e-81 308.1 362 49.7
MD09G1228800 Malus domestica HOM05D004228 ORTHO05D005137 1.7e-77 295.0 266 59.4
RcHm_v2.0_Chr2g0132171 Rosa chinensis HOM05D004228 ORTHO05D005137 3.1e-76 290.8 260 63.1
MBI14_g16438_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 7.7e-75 286.2 185 72.4
MD00G1188200 Malus domestica HOM05D004228 ORTHO05D005137 1.5e-70 271.9 252 58.3
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 1.4e-68 265.4 215 64.7
Gorai.007G245800 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.9e-65 255.0 167 74.9
Gorai.008G198300 Gossypium raimondii HOM05D004228 ORTHO05D005137 3.4e-62 244.2 149 78.5
CBR_g49119 Chara braunii HOM05D004228 ORTHO05D005137 1.7e-61 241.9 222 53.2
Gohir.D12G184901 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.0e-58 232.6 149 76.5
Glyma.20G046501 Glycine max HOM05D004228 ORTHO05D005137 1.8e-47 195.3 156 62.8
CBR_g49120 Chara braunii HOM05D000019 ORTHO05D000002 6.3e-45 186.8 207 48.3
Oeu057158.1 Olea europaea HOM05D004228 ORTHO05D005137 1.1e-44 186.0 114 78.1
Nitab4.5_0002244g0110 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.8e-44 185.3 106 83.0
Cfa001845 Carpinus fangiana HOM05D004228 ORTHO05D005137 4.1e-44 184.1 117 77.8
Gorai.006G048700 Gossypium raimondii HOM05D004228 ORTHO05D005137 5.4e-44 183.7 117 74.4
Nitab4.5_0000030g0490 Nicotiana tabacum HOM05D004228 ORTHO05D005137 3.5e-43 181.0 106 81.1
CBR_g49132 Chara braunii HOM05D004228 ORTHO05D005137 5.9e-43 180.3 148 60.8
SEGI_17966 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 2.3e-39 168.3 117 70.1
SEGI_04747 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 3.1e-39 167.9 108 72.2
SEGI_21553 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.5e-38 165.6 97 77.3
FAN02G0140 Fragaria x ananassa HOM05D004228 ORTHO05D005137 1.1e-36 159.5 102 75.5
MD09G1229100 Malus domestica HOM05D004228 ORTHO05D005137 7.0e-36 156.8 85 84.7
CBR_g49131 Chara braunii HOM05D007088 ORTHO05D008477 1.6e-32 145.6 95 70.5
Glyma.20G046401 Glycine max HOM05D004228 ORTHO05D005137 4.7e-32 144.1 94 74.5
Gohir.A06G076350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.4e-31 142.5 110 66.4
Gohir.D02G099801 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.4e-31 142.5 110 66.4
Gohir.A07G034550 Gossypium hirsutum HOM05D004228 ORTHO05D005137 4.0e-31 141.0 110 65.5
Gorai.002G214900 Gossypium raimondii HOM05D004228 ORTHO05D005137 2.6e-30 138.3 91 72.5
Gohir.A05G304350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 5.8e-30 137.1 95 70.5
CDE02G2004 Ceratophyllum demersum HOM05D004228 ORTHO05D005137 1.9e-28 132.1 104 67.3
Gohir.D13G121066 Gossypium hirsutum HOM05D004228 ORTHO05D005137 5.4e-28 130.6 91 68.1
Gohir.D09G001001 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.7e-27 128.3 227 37.9
Gorai.009G406300 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.9e-25 122.1 227 37.0
MD00G1188000 Malus domestica HOM05D004228 ORTHO05D005137 4.3e-25 120.9 76 73.7
Lsat_1_v5_gn_5_149700 Lactuca sativa HOM05D004228 ORTHO05D016156 1.3e-21 109.4 176 42.0
SEGI_15998 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.7e-21 109.0 74 67.6
Actinidia00024 Actinidia chinensis HOM05D000639 ORTHO05D019441 8.3e-21 106.7 120 52.5
MCO12G087 Micromonas commoda HOM05D004228 ORTHO05D005137 2.4e-20 105.1 163 39.9
MBI14_g16442_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 2.2e-13 82.0 54 66.7
Gohir.A11G044150 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.9e-13 81.6 63 65.1
Lsat_1_v5_gn_4_114980 Lactuca sativa HOM05D004228 ORTHO05D005137 5.1e-10 70.9 73 57.5
Cpa.g.sc167.21 Carica papaya HOM05D004228 ORTHO05D043558 1.1e-09 69.7 37 75.7
Cre08.g381800 Chlamydomonas reinhardtii HOM05D004228 ORTHO05D005137 1.1e-09 69.7 172 32.6
Pp3c5_70 Physcomitrium patens HOM05D004228 ORTHO05D005137 9.0e-07 60.1 44 59.1
MD00G1188100 Malus domestica HOM05D004228 ORTHO05D043558 2.6e-06 58.5 29 82.8


User provided reference genes

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