Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 1.1e-144 516.5 250 100.0
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 1.7e-121 439.5 248 83.5
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 7.3e-120 434.1 248 82.7
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 1.8e-118 429.5 248 82.7
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 3.7e-116 421.8 252 79.0
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 7.0e-115 417.5 248 79.8
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 1.6e-114 416.4 248 79.0
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 2.0e-114 416.0 248 79.8
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 5.9e-114 414.5 248 79.0
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 2.3e-113 412.5 250 77.6
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 3.9e-113 411.8 248 77.0
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 8.6e-113 410.6 250 78.4
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 9.5e-112 407.1 248 77.0
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 1.2e-111 406.8 253 77.1
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 2.1e-111 406.0 248 75.8
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 2.1e-111 406.0 248 78.2
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 2.1e-111 406.0 248 78.2
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 2.8e-111 405.6 248 75.4
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 4.7e-111 404.8 248 77.8
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 6.2e-111 404.4 249 76.3
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 8.0e-111 404.1 248 75.4
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 1.4e-110 403.3 248 78.2
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 5.2e-110 401.4 248 77.0
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 8.9e-110 400.6 248 76.2
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 1.2e-109 400.2 248 77.8
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 2.0e-109 399.4 248 76.2
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 4.4e-109 398.3 248 75.0
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 5.8e-109 397.9 248 75.8
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 5.8e-109 397.9 248 77.0
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 7.5e-109 397.5 248 77.0
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 7.5e-109 397.5 248 77.0
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 7.5e-109 397.5 248 75.0
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 7.5e-109 397.5 248 76.6
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 9.8e-109 397.1 248 76.6
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.2e-108 396.0 248 76.6
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 2.9e-108 395.6 248 76.6
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 2.9e-108 395.6 249 73.9
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 3.7e-108 395.2 250 75.2
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 3.7e-108 395.2 248 75.4
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 4.9e-108 394.8 245 74.3
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 6.4e-108 394.4 248 75.4
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 1.1e-107 393.7 248 76.6
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 1.4e-107 393.3 249 76.7
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 1.9e-107 392.9 248 75.8
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 3.2e-107 392.1 249 75.9
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 4.1e-107 391.7 259 72.6
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 5.4e-107 391.3 248 76.2
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 7.0e-107 391.0 248 76.2
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 1.2e-106 390.2 244 73.4
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 2.0e-106 389.4 248 75.0
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 7.8e-106 387.5 250 71.2
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 7.8e-106 387.5 248 74.2
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 1.0e-105 387.1 249 74.3
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.0e-105 387.1 250 72.4
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 1.0e-105 387.1 250 72.8
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 1.0e-105 387.1 248 73.8
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 1.3e-105 386.7 248 73.0
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 3.0e-105 385.6 250 73.2
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 5.0e-105 384.8 248 69.8
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 6.6e-105 384.4 249 73.5
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.5e-104 383.3 250 72.0
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 1.5e-104 383.3 250 72.8
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 3.3e-104 382.1 250 72.4
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 5.6e-104 381.3 248 73.8
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 7.3e-104 380.9 250 72.0
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 1.6e-103 379.8 250 71.6
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 2.1e-103 379.4 248 72.6
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 2.1e-103 379.4 248 73.4
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 2.1e-103 379.4 250 72.4
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 2.8e-103 379.0 248 72.6
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 8.1e-103 377.5 248 71.8
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.1e-102 377.1 244 73.8
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.1e-102 377.1 244 73.8
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 1.4e-102 376.7 248 71.8
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 1.4e-102 376.7 248 73.0
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 1.4e-102 376.7 248 74.2
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 1.4e-102 376.7 249 72.3
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 1.4e-102 376.7 248 71.8
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 1.8e-102 376.3 248 71.8
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 3.1e-102 375.6 248 71.8
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 3.1e-102 375.6 248 72.2
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 3.1e-102 375.6 248 71.8
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 4.0e-102 375.2 250 71.2
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 5.2e-102 374.8 244 73.4
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 5.2e-102 374.8 249 72.3
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 6.8e-102 374.4 248 71.8
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 6.8e-102 374.4 248 71.8
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 8.9e-102 374.0 249 72.7
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 8.9e-102 374.0 250 70.0
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 8.9e-102 374.0 248 70.2
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 1.5e-101 373.2 248 71.4
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 3.4e-101 372.1 248 71.4
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 4.4e-101 371.7 248 69.8
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 5.8e-101 371.3 239 72.4
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 9.8e-101 370.5 248 71.0
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 1.7e-100 369.8 248 70.6
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 2.4e-99 365.9 245 70.2
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 3.2e-99 365.5 243 72.4
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 3.2e-99 365.5 243 72.4
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 3.2e-99 365.5 251 69.7
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 7.1e-99 364.4 245 69.0
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 1.6e-98 363.2 243 71.2
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 2.7e-98 362.5 241 71.0
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 4.6e-98 361.7 245 69.0
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 6.0e-98 361.3 272 65.4
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 6.0e-98 361.3 272 65.4
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 1.7e-97 359.8 248 71.0
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 5.1e-97 358.2 244 70.5
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 5.1e-97 358.2 251 68.1
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 1.1e-96 357.1 225 75.6
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 3.3e-96 355.5 251 69.3
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 2.1e-95 352.8 239 70.3
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 3.6e-95 352.1 241 70.1
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 6.2e-95 351.3 239 70.3
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 1.4e-94 350.1 290 60.7
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 1.9e-91 339.7 291 59.8
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 3.5e-90 335.5 248 67.3
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 1.3e-89 333.6 248 65.3
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 1.7e-89 333.2 240 67.5
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 5.1e-89 331.6 242 65.3
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 1.5e-88 330.1 182 85.7
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 4.3e-88 328.6 251 63.3
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 2.8e-87 325.9 238 65.5
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 8.9e-86 320.9 201 76.1
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 1.7e-84 316.6 172 87.8
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 2.9e-84 315.8 254 60.6
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 5.1e-81 305.1 242 63.6
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 8.7e-81 304.3 245 62.9
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 6.2e-79 298.1 248 62.9
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 6.9e-78 294.7 173 78.6
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 3.9e-73 278.9 186 72.6
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 9.0e-70 267.7 182 72.5
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 9.0e-70 267.7 147 87.1
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 9.0e-70 267.7 147 87.1
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 2.2e-68 263.1 151 80.8
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 1.3e-65 253.8 232 51.3
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 3.9e-57 225.7 193 59.1
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 2.6e-53 213.0 179 55.9
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 4.6e-50 202.2 173 59.0
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 5.3e-46 188.7 187 54.5
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 5.3e-46 188.7 187 54.5
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 3.9e-41 172.6 110 75.5
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 6.7e-41 171.8 157 49.0
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 2.8e-39 166.4 204 43.6
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 5.9e-37 158.7 86 84.9
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 3.5e-29 132.9 73 82.2
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 1.6e-26 124.0 62 90.3
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 2.7e-26 123.2 75 73.3
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 6.1e-26 122.1 174 38.5
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 1.4e-22 110.9 75 76.0
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 3.1e-22 109.8 168 37.5
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 1.6e-21 107.5 100 57.0
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 1.6e-21 107.5 100 57.0
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 3.8e-20 102.8 106 56.6
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 1.4e-14 84.3 83 59.0
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 9.1e-14 81.6 92 53.3
MCO07G095 Micromonas commoda HOM05D004292 ORTHO05D005206 3.2e-11 73.2 234 26.9
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 4.0e-09 66.2 51 56.9
Cre03.g160850 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 2.0e-08 63.9 172 30.2
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 7.5e-08 62.0 54 59.3
Os09g0411500 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 1.3e-07 61.2 59 50.8
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 2.2e-07 60.5 38 73.7
PRCOL_00001474 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 2.2e-07 60.5 200 25.0
arahy.Tifrunner.gnm1.ann1.A5SBZK Arachis hypogaea HOM05D004292 ORTHO05D005206 8.3e-07 58.5 65 46.2


User provided reference genes

Program Settings