Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026839 Camellia sinensis var. sinensis HOM05D006745 ORTHO05D008449 1.5e-120 436.4 252 100.0
CSS0046970 Camellia sinensis var. sinensis HOM05D006745 ORTHO05D008449 4.0e-118 428.3 252 97.6
Actinidia28725 Actinidia chinensis HOM05D006745 ORTHO05D008449 2.8e-103 379.0 210 88.1
Rhsim08G0031100 Rhododendron simsii HOM05D006745 ORTHO05D008449 2.6e-101 372.5 205 88.3
vmacro18434 Vaccinium macrocarpon HOM05D006745 ORTHO05D008449 6.4e-100 367.9 205 86.3
GSVIVG01007224001 Vitis vinifera HOM05D006745 ORTHO05D008449 2.0e-93 346.3 210 80.0
RcHm_v2.0_Chr2g0098641 Rosa chinensis HOM05D006745 ORTHO05D008449 2.9e-92 342.4 206 80.1
MD15G1238900 Malus domestica HOM05D006745 ORTHO05D008449 8.4e-92 340.9 207 80.2
Manes.01G150100 Manihot esculenta HOM05D006745 ORTHO05D008449 4.2e-91 338.6 206 79.1
AUR62003702 Chenopodium quinoa HOM05D006745 ORTHO05D008449 2.1e-90 336.3 208 76.9
HanXRQChr16g0531741 Helianthus annuus HOM05D006745 ORTHO05D008449 2.1e-90 336.3 204 77.5
FAN19G0356 Fragaria x ananassa HOM05D006745 ORTHO05D008449 3.5e-90 335.5 206 77.7
Potri.005G109000 Populus trichocarpa HOM05D006745 ORTHO05D008449 3.5e-90 335.5 197 83.2
Cfa007050 Carpinus fangiana HOM05D006745 ORTHO05D008449 4.6e-90 335.1 195 82.1
Lj2A482T63 Lonicera japonica HOM05D006745 ORTHO05D008449 4.6e-90 335.1 204 78.4
QL06p051396 Quercus lobata HOM05D006745 ORTHO05D008449 1.3e-89 333.6 195 82.1
Ciclev10026368m.g Citrus clementina HOM05D006745 ORTHO05D008449 1.8e-89 333.2 200 78.0
Gohir.A11G041100 Gossypium hirsutum HOM05D006745 ORTHO05D008449 2.3e-89 332.8 199 78.4
Gohir.D11G044400 Gossypium hirsutum HOM05D006745 ORTHO05D008449 2.3e-89 332.8 199 78.4
Gorai.007G047700 Gossypium raimondii HOM05D006745 ORTHO05D008449 2.3e-89 332.8 199 78.4
TWI73G1304 Tripterygium wilfordii HOM05D006745 ORTHO05D008449 3.9e-89 332.0 205 78.0
Eucgr.I02315 Eucalyptus grandis HOM05D006745 ORTHO05D008449 8.7e-89 330.9 207 77.3
Sopen02g012910 Solanum pennellii HOM05D006745 ORTHO05D008449 4.3e-88 328.6 205 75.1
FAN26G1827 Fragaria x ananassa HOM05D006745 ORTHO05D008449 5.6e-88 328.2 207 76.8
FAN23G2677 Fragaria x ananassa HOM05D006745 ORTHO05D008449 9.6e-88 327.4 206 76.2
Sc22g0002270 Simmondsia chinensis HOM05D006745 ORTHO05D008449 9.6e-88 327.4 207 71.5
AL2G11270 Arabidopsis lyrata HOM05D006745 ORTHO05D008449 1.6e-87 326.6 206 75.2
THA.LOC104817830 Tarenaya hassleriana HOM05D006745 ORTHO05D008449 1.6e-87 326.6 206 74.8
MELO3C007934.2 Cucumis melo HOM05D006745 ORTHO05D008449 2.1e-87 326.2 199 75.4
Oeu058205.1 Olea europaea HOM05D006745 ORTHO05D008449 2.1e-87 326.2 200 78.5
Oeu058207.1 Olea europaea HOM05D006745 ORTHO05D008449 2.1e-87 326.2 200 78.5
BcaC04g22678 Brassica carinata HOM05D006745 ORTHO05D008449 2.8e-87 325.9 204 75.0
BolC9t54579H Brassica oleracea HOM05D006745 ORTHO05D008449 2.8e-87 325.9 204 75.0
Nn6g31942 Nelumbo nucifera HOM05D006745 ORTHO05D008449 2.8e-87 325.9 204 73.5
Sabra05G0089300 Salix brachista HOM05D006745 ORTHO05D008449 2.8e-87 325.9 189 82.5
Lsat_1_v5_gn_3_71521 Lactuca sativa HOM05D006745 ORTHO05D008449 3.7e-87 325.5 201 76.1
Solyc02g061950.4 Solanum lycopersicum HOM05D006745 ORTHO05D008449 6.2e-87 324.7 205 73.7
BcaB07g31542 Brassica carinata HOM05D006745 ORTHO05D008449 8.2e-87 324.3 205 74.1
A09p13970 Brassica napus HOM05D006745 ORTHO05D008449 8.2e-87 324.3 205 75.6
PGR119G0426 Punica granatum HOM05D006745 ORTHO05D008449 8.2e-87 324.3 206 76.7
CANSAT01G0215 Cannabis sativa HOM05D006745 ORTHO05D008449 1.1e-86 323.9 195 79.5
CsaV3_6G047410 Cucumis sativus L. HOM05D006745 ORTHO05D008449 1.1e-86 323.9 199 74.9
Cc07_g11200 Coffea canephora HOM05D006745 ORTHO05D008449 4.0e-86 322.0 190 78.9
DCAR_023133 Daucus carota HOM05D006745 ORTHO05D008449 5.3e-86 321.6 207 74.9
Carub.0002s0099 Capsella rubella HOM05D006745 ORTHO05D008449 6.9e-86 321.2 205 74.1
arahy.Tifrunner.gnm1.ann1.DU2BQF Arachis hypogaea HOM05D006745 ORTHO05D008449 1.5e-85 320.1 207 73.9
arahy.Tifrunner.gnm1.ann1.EE1FTG Arachis hypogaea HOM05D006745 ORTHO05D008449 1.5e-85 320.1 207 73.9
PGSC0003DMG401023885 Solanum tuberosum HOM05D006745 ORTHO05D008449 1.5e-85 320.1 205 72.2
CAN.G576.2 Capsicum annuum HOM05D006745 ORTHO05D008449 3.4e-85 318.9 205 72.7
Phvul.002G105300 Phaseolus vulgaris HOM05D006745 ORTHO05D008449 3.4e-85 318.9 207 74.4
VMungo1215G1582 Vigna mungo HOM05D006745 ORTHO05D008449 4.5e-85 318.5 207 75.4
EL10Ac6g15168 Beta vulgaris HOM05D006745 ORTHO05D008449 7.6e-85 317.8 202 75.2
Glyma.01G163200 Glycine max HOM05D006745 ORTHO05D008449 1.3e-84 317.0 207 74.4
Aa31LG2G1020 Aethionema arabicum HOM05D006745 ORTHO05D008449 1.7e-84 316.6 202 72.8
PSO541G1183 Papaver somniferum HOM05D006745 ORTHO05D008449 2.2e-84 316.2 207 72.0
PSO675G1483 Papaver somniferum HOM05D006745 ORTHO05D008449 2.9e-84 315.8 201 73.6
TPR.G25110 Trifolium pratense HOM05D006745 ORTHO05D008449 6.5e-84 314.7 205 71.2
Ca_24936_v3 Cicer arietinum L. HOM05D006745 ORTHO05D008449 8.4e-84 314.3 201 73.6
Lj2g0007566 Lotus japonicus HOM05D006745 ORTHO05D008449 8.4e-84 314.3 195 75.4
Migut.N00678 Erythranthe guttata HOM05D006745 ORTHO05D008449 1.1e-83 313.9 203 71.9
Haze_03682 Corylus avellana HOM05D006745 ORTHO05D008449 1.4e-83 313.5 181 81.8
Medtr5g022860 Medicago truncatula HOM05D006745 ORTHO05D008449 1.9e-83 313.2 205 70.7
Sed0008453 Sechium edule HOM05D006745 ORTHO05D008449 1.9e-83 313.2 199 71.9
ECA246G0119 Erigeron canadensis HOM05D006745 ORTHO05D008449 5.5e-83 311.6 199 75.4
Prupe.7G173600 Prunus persica HOM05D006745 ORTHO05D008449 5.5e-83 311.6 197 78.2
Psat2g152400 Pisum sativum HOM05D006745 ORTHO05D008449 7.1e-83 311.2 205 70.7
BcaC04g22675 Brassica carinata HOM05D006745 ORTHO05D008449 1.6e-82 310.1 207 72.9
Nitab4.5_0000188g0160 Nicotiana tabacum HOM05D006745 ORTHO05D008449 1.3e-81 307.0 235 63.0
SGA_v2.0_scaffold77G25309 Striga asiatica HOM05D006745 ORTHO05D008449 3.9e-81 305.4 197 72.1
Ah.02g123330 Amaranthus hybridus HOM05D006745 ORTHO05D008449 5.1e-81 305.1 210 71.0
Aqoxy6G02103 Aquilegia oxysepala HOM05D006745 ORTHO05D008449 1.5e-80 303.5 197 73.6
ATR0661G256 Amborella trichopoda HOM05D006745 ORTHO05D008449 2.5e-80 302.8 209 67.0
Os02g0120300 Oryza sativa ssp. japonica HOM05D006745 ORTHO05D008449 3.3e-80 302.4 206 68.4
Zm00001eb229980 Zea mays HOM05D006745 ORTHO05D008449 1.6e-79 300.1 206 68.0
CiPaw.07G062000 Carya illinoinensis HOM05D006745 ORTHO05D008449 4.8e-79 298.5 205 75.1
Duzib147G0156 Durio zibethinus HOM05D006745 ORTHO05D008449 4.8e-79 298.5 195 75.9
Thecc.01G012900 Theobroma cacao HOM05D006745 ORTHO05D008449 6.3e-79 298.1 199 73.9
HPP92_012950 Vanilla planifolia HOM05D006745 ORTHO05D008449 6.3e-79 298.1 209 66.5
Lalb_Chr09g0321491 Lupinus albus HOM05D006745 ORTHO05D008449 8.2e-79 297.7 196 72.4
unitig_60.g25574 Utricularia gibba HOM05D006745 ORTHO05D008449 1.1e-75 287.3 245 59.2
CSS0012608 Camellia sinensis var. sinensis HOM05D006745 ORTHO05D008449 1.2e-74 283.9 208 72.6
AUR62018011 Chenopodium quinoa HOM05D006745 ORTHO05D008449 7.9e-74 281.2 188 75.0
ClCG01G020530 Citrullus lanatus HOM05D006745 ORTHO05D008449 8.8e-73 277.7 222 61.7
Sp2g00830 Schrenkiella parvula HOM05D006745 ORTHO05D008449 2.0e-69 266.5 199 66.3
Thhalv10023706m.g Eutrema salsugineum HOM05D006745 ORTHO05D008449 1.7e-68 263.5 206 63.6
Atru.chr3.895 Acer truncatum HOM05D006745 ORTHO05D008449 5.0e-68 261.9 207 65.7
Peaxi162Scf00439g00049 Petunia axillaris HOM05D006745 ORTHO05D008449 6.5e-68 261.5 253 56.5
AT1G63855 Arabidopsis thaliana HOM05D006745 ORTHO05D008449 3.6e-66 255.8 194 65.5
SalBow3G1250 Salvia bowleyana HOM05D006745 ORTHO05D008449 7.9e-66 254.6 190 66.8
FvH4_1g11230 Fragaria vesca HOM05D006745 ORTHO05D008449 2.0e-64 250.0 158 75.3
Atru.chr3.884 Acer truncatum HOM05D006745 ORTHO05D008449 2.6e-64 249.6 189 67.2
Pp3c3_3170 Physcomitrium patens HOM05D006745 ORTHO05D008449 1.8e-62 243.4 199 57.8
CDE05G1799 Ceratophyllum demersum HOM05D006745 ORTHO05D008449 7.0e-62 241.5 160 69.4
SMO340G0117 Selaginella moellendorffii HOM05D006745 ORTHO05D008449 6.5e-60 235.0 197 55.8
FAN28G2493 Fragaria x ananassa HOM05D006745 ORTHO05D008449 1.9e-59 233.4 216 57.9
Aqoxy278s001 Aquilegia oxysepala HOM05D006745 ORTHO05D008449 2.1e-58 229.9 189 63.0
Mapoly0041s0084 Marchantia polymorpha HOM05D006745 ORTHO05D008449 2.1e-58 229.9 203 54.2
CARHR047310 Cardamine hirsuta HOM05D006745 ORTHO05D008449 1.4e-57 227.3 149 73.8
Nitab4.5_0002337g0130 Nicotiana tabacum HOM05D006745 ORTHO05D008449 1.4e-57 227.3 187 59.9
Sed0011409 Sechium edule HOM05D006745 ORTHO05D008449 4.8e-55 218.8 246 50.4
Pp3c3_3178 Physcomitrium patens HOM05D006745 ORTHO05D008449 1.8e-54 216.9 199 54.3
Glyma.02G164500 Glycine max HOM05D006745 ORTHO05D008449 4.7e-50 202.2 188 53.7
CARHR047280 Cardamine hirsuta HOM05D006745 ORTHO05D008449 3.0e-49 199.5 126 73.8
arahy.Tifrunner.gnm1.ann1.N8WRPV Arachis hypogaea HOM05D006745 ORTHO05D008449 1.3e-47 194.1 126 72.2
Cpa.g.sc29.52 Carica papaya HOM05D006745 ORTHO05D008449 5.3e-46 188.7 120 74.2
Medtr3g096570 Medicago truncatula HOM05D006745 ORTHO05D008449 4.0e-41 172.6 131 63.4
Medtr3g096562 Medicago truncatula HOM05D006745 ORTHO05D008449 1.7e-39 167.2 117 68.4
MSTRG.17961 Avicennia marina HOM05D006745 ORTHO05D008449 4.2e-35 152.5 89 80.9
Rhsim01G0268300 Rhododendron simsii HOM05D006745 ORTHO05D008449 8.0e-34 148.3 94 76.6
BraA09t37044Z Brassica rapa HOM05D006745 ORTHO05D008449 1.0e-33 147.9 100 71.0
Hund14069 Selenicereus undatus HOM05D006745 ORTHO05D008449 3.6e-26 122.9 83 69.9
SEGI_40099 Sequoiadendron giganteum HOM05D006745 ORTHO05D008449 3.2e-22 109.8 64 75.0
Medtr2g078490 Medicago truncatula HOM05D006745 ORTHO05D008449 9.2e-22 108.2 109 49.5
COL.COLO4_22483 Corchorus olitorius HOM05D006745 ORTHO05D008449 2.9e-15 86.7 51 78.4
BolC4t24505H Brassica oleracea HOM05D006745 ORTHO05D008449 1.9e-14 84.0 59 67.8
Glyma.11G080201 Glycine max HOM05D006745 ORTHO05D008449 3.9e-12 76.3 50 70.0
Mapoly0001s0305 Marchantia polymorpha HOM05D002956 ORTHO05D008031 5.1e-12 75.9 166 33.7
SEGI_27117 Sequoiadendron giganteum HOM05D001602 ORTHO05D001470 6.8e-09 65.5 127 38.6
Ciclev10003913m.g Citrus clementina HOM05D002553 ORTHO05D002767 2.0e-08 63.9 143 32.2
CDE08G1662 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 7.6e-08 62.0 159 31.4
Pp3c3_3430 Physcomitrium patens HOM05D002956 ORTHO05D008031 9.9e-08 61.6 146 37.0
MCO09G596 Micromonas commoda HOM05D002956 ORTHO05D008031 1.7e-07 60.8 163 27.0
THA.LOC104818678 Tarenaya hassleriana HOM05D002553 ORTHO05D002767 1.7e-07 60.8 148 32.4
PSO339G2954 Papaver somniferum HOM05D002956 ORTHO05D008031 2.2e-07 60.5 162 33.3
BcaC08g47561 Brassica carinata HOM05D006908 ORTHO05D008662 2.9e-07 60.1 95 38.9
Gohir.A07G121300 Gossypium hirsutum HOM05D002956 ORTHO05D008031 2.9e-07 60.1 134 32.1
PGR031G3980 Punica granatum HOM05D002553 ORTHO05D002767 4.9e-07 59.3 143 29.4
Gohir.D07G125600 Gossypium hirsutum HOM05D002956 ORTHO05D008031 6.4e-07 58.9 134 31.3
Eucgr.J00675 Eucalyptus grandis HOM05D002956 ORTHO05D008031 8.3e-07 58.5 152 30.3
Oeu063957.2 Olea europaea HOM05D006908 ORTHO05D008662 8.3e-07 58.5 186 29.6
TAR626G0624 Trochodendron aralioides HOM05D006908 ORTHO05D008662 8.3e-07 58.5 204 28.9
HPP92_003725 Vanilla planifolia HOM05D006908 ORTHO05D008662 8.3e-07 58.5 210 28.1
BcaNung04367 Brassica carinata HOM05D002553 ORTHO05D002767 1.4e-06 57.8 145 28.3
Mapoly0059s0066 Marchantia polymorpha HOM05D001602 ORTHO05D001470 1.4e-06 57.8 142 33.8
TWI31G0384 Tripterygium wilfordii HOM05D002956 ORTHO05D008031 1.4e-06 57.8 145 31.7
CDE05G3564 Ceratophyllum demersum HOM05D001602 ORTHO05D001470 3.2e-06 56.6 141 31.2
DCAR_023055 Daucus carota HOM05D006908 ORTHO05D008662 3.2e-06 56.6 167 30.5
THA.LOC104826460 Tarenaya hassleriana HOM05D002956 ORTHO05D008031 3.2e-06 56.6 151 30.5
CANSAT56G3342 Cannabis sativa HOM05D006908 ORTHO05D008662 4.1e-06 56.2 156 30.1
CiPaw.14G111000 Carya illinoinensis HOM05D002956 ORTHO05D008031 4.1e-06 56.2 152 30.3
Potri.009G068400 Populus trichocarpa HOM05D002956 ORTHO05D008031 4.1e-06 56.2 150 32.7
Prupe.4G260400 Prunus persica HOM05D002956 ORTHO05D008031 4.1e-06 56.2 185 27.0
SalBow2G2262 Salvia bowleyana HOM05D006908 ORTHO05D008662 4.1e-06 56.2 185 27.0
BcaNung00773 Brassica carinata HOM05D006469 ORTHO05D008034 5.4e-06 55.8 148 31.1
CANSAT54G1478 Cannabis sativa HOM05D002956 ORTHO05D008031 5.4e-06 55.8 145 26.9
Cre17.g747147 Chlamydomonas reinhardtii HOM05D001602 ORTHO05D001470 5.4e-06 55.8 139 33.1
Dinv38042 Davidia involucrata HOM05D006908 ORTHO05D008662 5.4e-06 55.8 204 27.9
GSVIVG01018765001 Vitis vinifera HOM05D006469 ORTHO05D008034 5.4e-06 55.8 145 29.0
Pp3c27_4830 Physcomitrium patens HOM05D002553 ORTHO05D002767 7.1e-06 55.5 148 28.4
TPR.G11875 Trifolium pratense HOM05D002757 ORTHO05D008031 7.1e-06 55.5 174 30.5
AagrBONN_evm.TU.Sc2ySwM_362.258 Anthoceros agrestis HOM05D001602 ORTHO05D001470 9.2e-06 55.1 137 32.1
Aqoxy3G02562 Aquilegia oxysepala HOM05D001602 ORTHO05D001470 9.2e-06 55.1 126 31.7
A01p02720 Brassica napus HOM05D006469 ORTHO05D008034 9.2e-06 55.1 147 30.6
CARHR160400 Cardamine hirsuta HOM05D005677 ORTHO05D006966 9.2e-06 55.1 133 31.6
Migut.I00872 Erythranthe guttata HOM05D006908 ORTHO05D008662 9.2e-06 55.1 168 28.6


User provided reference genes

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