Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026826 Camellia sinensis var. sinensis HOM05D006942 ORTHO05D008737 4.9e-44 180.6 85 100.0
Actinidia38618 Actinidia chinensis HOM05D006942 ORTHO05D008737 2.2e-07 58.9 50 56.0
Oeu048436.1 Olea europaea HOM05D006942 ORTHO05D008737 2.2e-07 58.9 54 55.6
Aqoxy2G00557 Aquilegia oxysepala HOM05D006942 ORTHO05D008737 3.7e-07 58.2 50 60.0
RcHm_v2.0_Chr5g0046891 Rosa chinensis HOM05D006942 ORTHO05D008737 3.7e-07 58.2 50 60.0
COL.COLO4_13617 Corchorus olitorius HOM05D006942 ORTHO05D008737 4.8e-07 57.8 50 58.0
ECA233G4155 Erigeron canadensis HOM05D006942 ORTHO05D008737 4.8e-07 57.8 50 58.0
FvH4_3g25250 Fragaria vesca HOM05D006942 ORTHO05D008737 4.8e-07 57.8 50 58.0
FAN16G3006 Fragaria x ananassa HOM05D006942 ORTHO05D008737 4.8e-07 57.8 50 58.0
FAN21G2944 Fragaria x ananassa HOM05D006942 ORTHO05D008737 4.8e-07 57.8 50 58.0
CANSAT78G1082 Cannabis sativa HOM05D006942 ORTHO05D008737 6.3e-07 57.4 50 56.0
MELO3C026901.2 Cucumis melo HOM05D006942 ORTHO05D008737 6.3e-07 57.4 50 56.0
CsaV3_3G043400 Cucumis sativus L. HOM05D006942 ORTHO05D008737 6.3e-07 57.4 50 56.0
DCAR_009675 Daucus carota HOM05D006942 ORTHO05D008737 6.3e-07 57.4 50 56.0
Manes.08G149200 Manihot esculenta HOM05D006942 ORTHO05D008737 6.3e-07 57.4 50 56.0
Peaxi162Scf00076g01036 Petunia axillaris HOM05D006942 ORTHO05D008737 6.3e-07 57.4 50 56.0
QL07p020181 Quercus lobata HOM05D006942 ORTHO05D008737 6.3e-07 57.4 50 56.0
Rhsim04G0087000 Rhododendron simsii HOM05D006942 ORTHO05D008737 6.3e-07 57.4 39 69.2
Sc13g0007650 Simmondsia chinensis HOM05D006942 ORTHO05D008737 6.3e-07 57.4 39 69.2
SGA_v2.0_scaffold50G18512 Striga asiatica HOM05D006942 ORTHO05D008737 6.3e-07 57.4 50 56.0
Thecc.05G293100 Theobroma cacao HOM05D006942 ORTHO05D008737 6.3e-07 57.4 50 56.0
vmacro09146 Vaccinium macrocarpon HOM05D006942 ORTHO05D008737 6.3e-07 57.4 39 69.2
Eucgr.A02087 Eucalyptus grandis HOM05D006942 ORTHO05D008737 8.2e-07 57.0 50 56.0
MD12G1002500 Malus domestica HOM05D006942 ORTHO05D008737 8.2e-07 57.0 50 56.0
Nitab4.5_0000911g0030 Nicotiana tabacum HOM05D006942 ORTHO05D008737 8.2e-07 57.0 50 56.0
PGR042G3330 Punica granatum HOM05D006942 ORTHO05D008737 8.2e-07 57.0 50 56.0
TAR623G0107 Trochodendron aralioides HOM05D002140 ORTHO05D002382 8.2e-07 57.0 56 53.6
GSVIVG01033386001 Vitis vinifera HOM05D006942 ORTHO05D008737 8.2e-07 57.0 50 56.0
CSS0046453 Camellia sinensis var. sinensis HOM05D006942 ORTHO05D008737 1.1e-06 56.6 52 55.8
Lsat_1_v5_gn_6_36781 Lactuca sativa HOM05D006942 ORTHO05D008737 1.1e-06 56.6 50 56.0
Nn7g35832 Nelumbo nucifera HOM05D006942 ORTHO05D008737 1.1e-06 56.6 50 56.0
DCAR_019882 Daucus carota HOM05D006942 ORTHO05D008737 1.4e-06 56.2 50 56.0
Gohir.D13G109500 Gossypium hirsutum HOM05D006942 ORTHO05D008737 1.4e-06 56.2 50 54.0
Gorai.013G123100 Gossypium raimondii HOM05D006942 ORTHO05D008737 1.4e-06 56.2 50 54.0
Psat3g089160 Pisum sativum HOM05D006942 ORTHO05D008737 1.4e-06 56.2 50 56.0
SpUn0001_1050 Schrenkiella parvula HOM05D006942 ORTHO05D008737 1.4e-06 56.2 50 54.0
TAR633G0669 Trochodendron aralioides HOM05D006942 ORTHO05D008737 1.4e-06 56.2 50 54.0
Ciclev10021582m.g Citrus clementina HOM05D006942 ORTHO05D008737 1.8e-06 55.8 50 52.0
Thhalv10008350m.g Eutrema salsugineum HOM05D006942 ORTHO05D008737 1.8e-06 55.8 50 56.0
Gohir.A13G105500 Gossypium hirsutum HOM05D006942 ORTHO05D008737 1.8e-06 55.8 50 54.0
Medtr7g085420 Medicago truncatula HOM05D006942 ORTHO05D008737 1.8e-06 55.8 50 54.0
Os07g0170200 Oryza sativa ssp. japonica HOM05D006942 ORTHO05D008737 1.8e-06 55.8 39 66.7
TPR.G5873 Trifolium pratense HOM05D006942 ORTHO05D008737 1.8e-06 55.8 50 54.0
Atru.chr2.1323 Acer truncatum HOM05D006942 ORTHO05D008737 2.4e-06 55.5 50 54.0
MSTRG.19939 Avicennia marina HOM05D006942 ORTHO05D008737 2.4e-06 55.5 39 64.1
ClCG10G013230 Citrullus lanatus HOM05D006942 ORTHO05D008737 2.4e-06 55.5 50 54.0
PSO339G1210 Papaver somniferum HOM05D006942 ORTHO05D008737 2.4e-06 55.5 50 54.0
Sed0013150 Sechium edule HOM05D006942 ORTHO05D008737 2.4e-06 55.5 50 54.0
BcaC04g22009 Brassica carinata HOM05D006942 ORTHO05D008737 3.1e-06 55.1 50 52.0
A09p19530 Brassica napus HOM05D006942 ORTHO05D008737 3.1e-06 55.1 50 52.0
C09p24900 Brassica napus HOM05D006942 ORTHO05D008737 3.1e-06 55.1 50 52.0
BolC9t55381H Brassica oleracea HOM05D006942 ORTHO05D008737 3.1e-06 55.1 50 52.0
THA.LOC104823787 Tarenaya hassleriana HOM05D006942 ORTHO05D008737 3.1e-06 55.1 50 54.0
unitig_85.g27430 Utricularia gibba HOM05D006942 ORTHO05D008737 3.1e-06 55.1 50 52.0
Migut.J01895 Erythranthe guttata HOM05D006942 ORTHO05D008737 4.1e-06 54.7 50 52.0
Gorai.007G287900 Gossypium raimondii HOM05D006942 ORTHO05D008737 4.1e-06 54.7 50 58.0
Lj1g0019871 Lotus japonicus HOM05D006942 ORTHO05D008737 4.1e-06 54.7 50 54.0
Duzib177G1195 Durio zibethinus HOM05D006942 ORTHO05D008737 5.3e-06 54.3 50 54.0
MBI11_g05460_MAGBIO Magnolia biondii HOM05D006942 ORTHO05D008737 5.3e-06 54.3 50 52.0
Potri.013G059500 Populus trichocarpa HOM05D006942 ORTHO05D008737 5.3e-06 54.3 50 52.0
EL10Ac3g06808 Beta vulgaris HOM05D006942 ORTHO05D008737 6.9e-06 53.9 55 52.7
Manes.09G142700 Manihot esculenta HOM05D006942 ORTHO05D008737 6.9e-06 53.9 50 54.0
Prupe.7G002400 Prunus persica HOM05D006942 ORTHO05D008737 6.9e-06 53.9 29 79.3
Aa31LG2G1990 Aethionema arabicum HOM05D006942 ORTHO05D008737 9.1e-06 53.5 59 45.8
Cc00_g08890 Coffea canephora HOM05D006942 ORTHO05D008737 9.1e-06 53.5 39 66.7
Nn2g15884 Nelumbo nucifera HOM05D002140 ORTHO05D008737 9.1e-06 53.5 50 54.0


User provided reference genes

Program Settings